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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0732900 |
| Transcript ID | LotjaGi1g1v0732900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2A; TAIR: AT1G08880.1 Histone superfamily protein; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|V7CZN0|V7CZN0_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0732900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130448252..130456740) extracted from Lotus japonicus Gifu genome v1.2.
CTACCCATCAATAACATAAGTGTGTTCTATAAACATGTATTTATAAACTCTTTCTTTTCCTTTCTGAAAGCTTGATTCTT ATTATTATGGCATAGATCCTTGAGTTCCAGAGAAGATGGCTCTTCGAGATATAAAGTATGCTCTATACTTGCCTCTTCAT GAGGATCTGGTGTATCAGAAATATATCCGACCAAAGATCCATTGCTACGGTCCTCTTTGTTATTTGTATGATAGATCAAA TATAGTAACTGTGGTTCGAGAAGTAGACCAATGGCTATGCCTGCCGAAAAGCTCATCTTGTGAACTATTTGATCATTATA TGAATAACAGAGGGGCTCCCCGCCAACAGTGGTATCAGAGCCTAACTGCAGTCAGAGCAATCTTCTCTGTTCTCTTTCTC GAGGGTATATGTTATAATAATAGGATGAAGGTGAGTAAGAAGGAAACCCCCACATGTTATAATAATAGGATGAAGGTGAG TAAGAAGGAAACCCCCACACATATGAGTGACGACCAAATAGACTCTTCCCGACCCAGCTCTGAAAACCATACCTCTAAAA TCTCAATCCCTGCCTCTTGTAAACAAACTCTAGCCTCTAAAATAGAAAACCTTGTGGAATATTCCTATGTTCCTGAAGGT GCCCAAATTGAAACAGTGGTATCAACAACATTTTCAATGGGAGTTGCTTAATTTAATTGGAGTACTTAAATAACGTTGCT TATTTTGGAGCATCATTGGAGCAACATGATATGACAAGACAGTTCTTGTTGCTTATATAAGCAACGGTTTGCTTATTCTC TTTCTTCTTGATTTTTTACTAAAGAATTATATTTTCTCTTTCATTAATGACATTGAATAATGTCATGACTTTAAAATAAT ATAAATATATAAGATTAATGGAACTCAACCAAAAGTTTTAAGAAGTTGTGGTAGGAGTGAAATATGCATAAGTTGTTTAT GAGTTGCATAAATCATATGTGACAGCTTGTACCAACCAGAATAATGTTTAAGCAACCCAACTAGCAACTTATAGTTGTAG ATGCTTTAAGAATCGTTTTAGTGGTAAAGTAAGTCATCTTACTCTGAGCAGTGATTATCTGCTTTTAAAAGATTTATAAA ATAACTTAATCAGTTGTAAAAATAACTTATTTTATTTTCTAATATGACTCTCGCACTTTAGATGAACCGAATCAAATTAA AATGTTGCCCTAAAAAGTTAGTAAGAGAATTTTAGATTTATTTGATGATTTAGTTGAATGGTAACTGATCGGGGAAACCG ACCAGGGGGTGTTGATTGAAGAGGAACAATGAAACTCTAGTGGGGGTGGCGAGATGATGATCTTCACGGGGCTCCGTTGT TCGTTGTGTCCGGGAGGGGTCCCTGCGATGTCATTATGATGCTCAAGCTAGAACGTGGGTTAAGAGACTGTGAAATGGGA TAGATGAATGTGTACCTTAAGTTCTCAATGCCTTGGCTTTTATAGAGTTTGAGATTGCGCGGTTCAATGCGTTTATGAGT ACCTAGTACATCCTCGAACTTCGTGCATTTGTCTTGATTGTTGGTCCATAATTACCTAGTTGGTCGGTCGGAGTTGATCG TCCCTACAATTAGTGGGATTGAGGAGATAATGTGATTGACCCGGGAGTGATTGACTGGAGAGTCTTCCAAAAGAGGACGT AGTCGTTCTATCATGTCGGTGACTCGGTGAGGAATGAGCGATCTTATTGACTACCAAAACAGTAACAGAAGTAATACAGT TCTTCTAACCAAAAGAAAACAGCACCGTGAATGTAGTAAAATAAAACAAAAGCTGTGATGTGCATTAAAGTATTTGGCAG TATATGTTGTCCTAACCTAACATATATAGAGAGGCGGTGGCTAACCAAGCACGTGCATGCATCACAATTCACACACATAA ATATTTCCGAAACATATTTGCCGTGTTGTTTACTCATCCTTCTTTTCCTTCTTTCTTTCCTCTTTTTAATTTCGTCTCTT TCTCTCTGCATTCAATGGGCCATTTGCACATTGTTTTCTTTTTTGGGTAATGAATGAACTCTCACACTCTCTCCCTCTCT ATTTGTCTTCTTCTGTTCTTTTCCTTTCATTTCAATAAAATTTAAAGTTCCTGCATCGATAACGTGCGGGCCACCTTTGG GTTTTGGCCTTTTGTGCGTTAGGTCAACAACTAGGAACAGCTTTTGGCCTCTTGTGCCAACAGGTTCAATTGTGCCAAAT GCAAAAGATTTTTATGTATTTCTTTGGAAATTGATGTATCATATGAGGCTAGTCTTATTATATGAGAACTCGGGATGAGA ATTTTGCCCAAATTTATGAATACCCACCCGAACCTGATCTGATTTGACGAATAAATTCTGAGTTGACTGAATTTGGGTTT TGTCCGTTATTGTAGCAGTTTATGAGTTTGAGTTTGGTATTAGTTAAATTCGTGTTTGTATCCGCCCGAACTCAAAGATA CCCGAAACATAAAATTACAAAATAACCTCATACATATATATTTATAAACTTTGTTCTTAGTGTTTGATGATTAATTGTAC TTTTATATGTTTGAGAAAGTAAACTCTAAATTATTGTTGTTTTCTTTTAGTTCTGAATCGGGTTCCGAGAAATATTGCTA TTTCACGTAAGTAATGAGTTTGGGTTTGAGTTCCCAATGAGTTTGGATATGAATTTCATTTTATTACCCATAAGGATCTG AGTTTGAGTTTGGGTTCTGGGATTTGAATTTGGTAATTGTAGAACCCGTGCCCGATCCTACCCGTTGTCATCTCTAAATT GAGAACTATGAGAATGATATGAATATTCTAAACAAAAAGGTCAAAATTAAAACTATGAACAAATTACTACTAATTAATTA TAAATGATCAAAATTAAAGGTATTTACTATTTAGTGTAGTTACGTCACCACTTAAAATATCATATGACTTTTTAATAAAT TACTTAATATTTTAATTGTAACCATTTATAATTTGTTTTTAATTACTATTCTCAACAAACAAATCACACATGATACGTCT CCTTATTTATTTAACGGTTAAGTAATATATATAATTTGTTGGGCCTTATTGGCAATGCACAGATTGGAGAGTTTAGGTCT CATGGGCACAACATGGCTTGATCCTTTTGTTGCCTCATAAGCAATCTCATATGTTCACGGCCTTTAACAACTTCAAGTGT TTGGTAATCTCAACATTTGTAGCAACCTCTAATCTTTGATGGTCTACTACTTTAGTTATTTTAAATATTGTAAATTGACC AATATTCAAGATATTTCTTAACAATGTTGTTGCCCACGTCCCCTGATCACAACATTTGTTAACTATGTGATAAGGGGGCG GTTGAATTAGGGTTAGAGGGACTCTCTCCAATATGTGCCTAAAGGTCAGGACCTTTGTAAATCTCATGTTTACTTGAATA TATAAAACACAAAATTCATAATTCTCCCTTGATTTGTTAAACTAATGTTGATTATGTGAACATTTAGTGTCATACCTTTT CTAATTATATATGCTCAAAATTCACAATTACCACATATATAAAATAAATAAATATATATAACTGTCAGCTTTAAGGATAC ATTAGGAAAAAAGTACGGAAAGAGTATACAGTTAGTGACAATTTATTAGTGCAATTAGATGATGTACTTTTACCTTTTAG TTGGGGATCTTTAAGTCCACTTACCTTTTCATCCAAAATACAAAGGATGCTGTTACATGCAATGAATGCATGGTTTTTGG CGGATTAATTCCCTCTTATGATATTAATTTTAAAGAAAAGTCCCAACGAACTTGGTGCAATGCATTTGTTCGATTGTTGG CTGATTAAATTCAAAGATTCTTCATTGACCAATAGTAAAATTGTATTTTACTTTTTTATTTAATTTAGAAATTTAGGGGG CCTGAATGACTGAATGTTGTTACAGTCATGACGTAAGTCTAATAAGTATATTTGTGGAAGATTAGTATAAAAAGCAATTG GACGTCAAGCTTTGATTTGGACCAAAGACTTTCTCACTGATGATGTTTTTGAATATATCACCAAACTGAGCGTGTCCAGA CGTTAAAAAAGCAGTTTTATGAGTATTTTTCTTTAAACAAGAGGAAGACAAAGAAGTTTTATGATTGAAATGGATTTTGG TATCTATGATTTATAATCATTTGCGTTTTCATTTTTATGATTATTTTTCTTTTAGGTTTTGGGCCACAAGAGTGAATATA TAACTAGGGATTGTGCAAAATGGGTCACCATATTTTAAAATGAGGGATTGAAGTCCATAATTTTTTTTTCGTTTGCACAT TTAGTCCTTATGTGTTCATTTTGTCCAATAACTAACATTTTTACGTACGTGGCACGGTGGCACCAAAAAGAAGAACCACA CTATACTGAGAGTGTTCAATACTAATATCACTTATAACATCTCAATCTAATGATTGTCCCTAATATAATAACAATAGTCT TTTCAGCAAGTTTTTTTCACTCACGCATTCTCTAGGAAACTCTACAAAGTCATTTATCTCATATTGCTCTCAAGAAAACA CGCTAACTTTAGAGTTTCTATAGATTGAGCACCATAAATTAAGATGCTCATTGTTGTTATGAATGATACCTAAAAAAATA CTTAAGCCTTATTTAACTATAATCACAGCCACACACACATATTGACCGTAGTTGAGGGTCGAAACATTGGCTCTGATGGT TACTCACCCACATGTATGTTGACCGCAATTGATGGTGGAAGCATTGGCTATGATCGACGAGCCCCTATTGAAAGATGGGA AGTTTGCGGACTTGACGTGTTGGCAAGTTTGGGGACTTGACGTTTGAAAGATGGGATAAAGAGGTCAATTGAGGCCTGAC AAAGGAGTTGAAGGAGCGGTGACCGCCCTAAGCTGAGGTCTCTCTTGCTCTTTGGTCTTGTTTTTGGGTACATGTCATTA GTTTTGTATCTTTCGTTCCTTTTTAGTCTTGACCATTGGTTATTGTTTTTTTTTCTGCCAGCTCCCTTATAAGCAGGGGT GAAAATAGGTCAAGTCAAGCCAGACTTTGTGTGACCCTGCAAGCCTCCCTGCATTCTATTTTCGTGGCCCAAGCCTGACT TGTGACTTGTCAACAAGCCGAATTTTAAGGCCTGATATGACCTATTATATAGCATAGTTTGGCTTACAAGCCTACTTAAA AACCTATTTAATTAACAGACAATTTCATCTAAAGAAGACCAATAGACCGGCGGGCTAATAGACCTTTTTATATATCATTG CATTTCATTTTCAAATAAAAAAACTTGTATTTCACATTTTAAAGAACAAAACTCAGTTATTTAAAACAAACAACTAAAAT TAAACATGAATCATTTAATAACAATATGTCTTAAGTCTTAAACATATAAATAATGACATAAAAATAAAATAAAAAAGAAT GAAGAAGAGGAGCACCACATTCAAAATTCTTATTATATTATATTTATTGATAATATTAATAAAAATAATAGATAAACAAG CCGGCCTATCAAGCCAAATAGGCTTTTTATGATAGCTTGGAGTTGACATTTTTAGTTAATTATTAAGCCTTTTAAAAAGT TTAAGCCCAACCTTTTTAATAAACGAGTCAAGTCAGACCAAACCTCTGACGAGCCCCTATTGAACCGCCTGACTTGTTTC CACCCTTACTTATAAGGTGGTTTGAGGGCTGTGCTAGTTATGATGGTAGAGGTTTTTGCTTCTGCGATCCCTCGATTGAC TTATTTTTTCCAGGACCTTGGTTTTTATTAATGGGATTAGTCCCTCTCTTAATCACTATATTTGAATTTCATGTTTCAAA AAAAAAAGTCAATATCATCACATGTAGCAAACTATGACAATATTTTTCTATTAAGGGTGTTCATTGAAAGAATTGGACTA ATAAAAACAAATTTTGGAAGCCAAGTTTCAAAGATTTGTTTAATCTAAATTGCGGCCTAGCCAAACAAGTCTGGATAATC CATAAGGATTCTGAAGCATTATGGCCTTATGGGTTAGCAGCTAATATAGGGGGTGAAGTGGGCTAAGCCCGCCATTTACA TTTTTTTATAAAAAACTATGACAATATTTTCTATGACTATGCATTGAAATAAAACGACGACCTATATTATTTGAAACGAC AATGAGCGACAAATTTGAAGCGAAATAAATCTGAAAATTCATATTTCCCGCGAGAGCGCAAACTCAAAACTCAAAAAACG AGTATTGTTGCCACGCTGGCGATCCGCGTGAACCTCTCTCATCCAATCACAATCCAGAGTCGCTCTCTATATAAACCAAA CCCAAGCGTTTGAACATTCACAACATACTCTTTCATCTTCATCTTCTTCAGCAAATTCAAATTCCTGAAACCATGTCTTC CACAGAAGCTGCTACCACCACCAAGAAGGGCGGAAGAGGCAAACCCAAAACCACCAAATCCGTCTCCAGATCCTCCAAAG CCGGCCTCCAATTCCCCGTCGGCCGCGTCGCTCGCTACCTCAAGGCCGGCCGCTACTCCCAGCGCGTCGGATCTGGCTCC CCTGTTTACCTCTCCGCAGTCCTCGAATACCTCGCCGCCGAGGTTCATCATCTTCATCATTCATCCTCTTTCGTTGTTTG CAATTTCTTTCAATTTCATTTCATTTTTTCTGATCTGATTTTCTTAATTTTTGGGGATTTTTGTTTTTTAGGTTTTGGAG CTTGCTGGTAACGCTGCAAGGGACAACAAGAAATCGAGGATAATTCCGAGGCACATTCAGCTTGCGGTGAGGAACGATGA GGAGTTGAGCAAGTTGATGGGGCATGTGACGATTGCGAGCGGTGGTGTTCTGCCGAAGATTCACCAGAACTTGTTGCCGA AGAAGGTTGCTGGGAAGGGGAAAGGGGAAATTGGATCTGCTAGTCAAGAGTTCTAGATATGTATCTAGGGTTTGTTGTTT CACTTCTTGTGGAAAAAATGGATGATTAGTGTAGTTGTTGTTTTGGTTGGTCAATTGATGTATTGAGATTAGAGGGTGTA TAGCTCTTCATTTTGTGAAAAACTAATCAAATTTCATGTTCTGGCCTTGGTTTTCCACTGGATTTATTATGTGCTTTTGG GTTTCTGCTTCATTGCCTATTGTTATGGTTGTGCCGAATGCTTGTTGTTTGTTTGGGTTCTCTTACTGTGAGATAATGTT TGGTTTCGGCTATAAAATTTCTTAATGATTGTCTGTTATCAGCAATACTGGTAATGCACAGGTTTTATAATCCTTGTTTT GTTTCTGCTCCTTTGTCAATGGTCAAGCATTAACCTAGCAATGATACTACTGAGATAGGGATTACAGTATTTAAAAGGTA ATTAATAAGCCCATGTTTTGTTGTTGATCTAAGTTTATGATTTTGAATTTAAATTTGCTTAAACTACTGTTTATTTTGGT TCCTTTGTTTTGTTTAGTGAGACTGCAAGAGACGCTCCTTTTGGATATAATTGGTGAGAACATTAAGTTTACAGATGCAA GTGAAGTATTTCCAACAATAGAACGCCGGCTCCGAGGAAAGAAGGTTCTGTTGGTTCTTGATGATATTAGCAATGATGAG CAGTTGGACTCATTAGCTGGAAACCATGATTGGTTTGGTACTGGTAGCAGAGTCATCATAACCACTAGGTTTCCATTTTT GCTTAAATTCCATGGCGTTCATCACCAATACAAGCTCGAGCTATTACACGAAGAAGAAGCTCTCGAGTTATTTTGTTGGA AGGCCTTCGAAAGTAGAGATGTGGATCCGATTTATATGGAACTATCAAAAAGTATAGTGAGATATACCCAAGGTATTCCA TTGGTCTTGGAATTAATTGGTTCTGGCTTGTTTGGTAAGCCAATTTCTGAATGGAAATACATTTTTGACAGTTACCTTAG TCATGGTGAGGACGATCAAAGTATTTGGAGGCTCCTTCATAAGATCAGCTATGAAGGTTTGGATGATGATGTGAAAACAG TTTTCCTTGACATTGCATGTTGCTTCAATGGTTACAAAGTGGACTTTCTTACTGATTTGTTTTTAAATGCTCGTGGTTTC TCTCCAACATATGCTTTACAAGTGTTGATTTCCAAATCATTAATAAAGATAGATGGTGGTGTGGTTAGAATGCATGACAC GGTACAGATGATAGGTAGGTCAATTGTTAAGGAGGAACCACCTATAGAGCCTGGTAAACGCAGTAGATTGTGGTACTATG AAGACATTCTTGATGTCCTAAAAAACAATACGGTACGTTCTATCTATATATCTGCAGCCTGGTATTTCTCTGTTTGAAAT TCCTCCAGTTTCCTCTTTTGATCAATAATGTTTTGTGACATGGCTTTCCAGTTTCCACCATTTGTGCATATGTTGGTGAC ACTTAATTTGCAGTAAAATACATGCAAGCAACAACATGCTTGATAATGAATATTTGTGGATTTCACTGGGTATTTGTATC AAATTCCTA
CDS sequence (LotjaGi1g1v0732900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCACAGAAGCTGCTACCACCACCAAGAAGGGCGGAAGAGGCAAACCCAAAACCACCAAATCCGTCTCCAGATC CTCCAAAGCCGGCCTCCAATTCCCCGTCGGCCGCGTCGCTCGCTACCTCAAGGCCGGCCGCTACTCCCAGCGCGTCGGAT CTGGCTCCCCTGTTTACCTCTCCGCAGTCCTCGAATACCTCGCCGCCGAGGTTTTGGAGCTTGCTGGTAACGCTGCAAGG GACAACAAGAAATCGAGGATAATTCCGAGGCACATTCAGCTTGCGGTGAGGAACGATGAGGAGTTGAGCAAGTTGATGGG GCATGTGACGATTGCGAGCGGTGGTGTTCTGCCGAAGATTCACCAGAACTTGTTGCCGAAGAAGGTTGCTGGGAAGGGGA AAGGGGAAATTGGATCTGCTAGTCAAGAGTTCTAG
Protein sequence (LotjaGi1g1v0732900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTEAATTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYSQRVGSGSPVYLSAVLEYLAAEVLELAGNAAR DNKKSRIIPRHIQLAVRNDEELSKLMGHVTIASGGVLPKIHQNLLPKKVAGKGKGEIGSASQEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 143 | 143 | 1.3E-80 | – | |
| PANTHER | 1 | 143 | 143 | 1.3E-80 | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| Pfam | 8 | 97 | 90 | 2.4E-15 | ||
| Gene3D | 9 | 135 | 127 | 4.0E-59 | ||
| SMART | 11 | 131 | 121 | 6.6E-75 | ||
| CDD | 11 | 128 | 118 | 1.66454E-66 | ||
| PRINTS | 22 | 44 | 23 | 3.3E-50 | ||
| SUPERFAMILY | 25 | 128 | 104 | 2.99E-42 | ||
| ProSitePatterns | 30 | 36 | 7 | - | ||
| PRINTS | 51 | 66 | 16 | 3.3E-50 | ||
| PRINTS | 66 | 79 | 14 | 3.3E-50 | ||
| PRINTS | 80 | 94 | 15 | 3.3E-50 | ||
| Pfam | 100 | 134 | 35 | 1.8E-17 | ||
| PRINTS | 108 | 126 | 19 | 3.3E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi1g1v0732900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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