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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0738900 |
Transcript ID | LotjaGi1g1v0738900.5 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Anaphase-promoting complex subunit 5; TAIR: AT1G06590.1 anaphase-promoting complex subunit; Swiss-Prot: sp|Q8H1U4|APC5_ARATH Anaphase-promoting complex subunit 5; TrEMBL-Plants: tr|A0A0S3RJT4|A0A0S3RJT4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0738900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131312106..131316334) extracted from Lotus japonicus Gifu genome v1.2.
GTAATTTATATACTGAATATTTTGCCAATTTTCACTACTCATAAGCATTGTATTTTTTATGCACTGTTTTGAAATCTTTT CCATCACTCCAGGGTGATGAAAGATATAATTCTTGTTGTTTATACATACATAATGCTTATTTTCATGTTTTTGTATACCT TGATTCTTGAAAGCTTTCCATATTTATTTCATTTCCTGACTTAATTTTTTTTTAATATTGTAATTAGCTCCCCACTGTCT CGGATAAATGCTCTACTGCATGCAACTTGCTTTGCTGATGCATCAAGGTAGCTCATTAGCAGTATTTGAACGTATTACAT AAATTATATTTTAAGTTGCTAATTCTGTATTACATTTGTTTATTATTAAAAACAACCATATCCCAGTCATTTTATTATTT TTCTTTTCTTACATTAACTTTTTTCTTGGTTTCCCCAGTTCAGCAGATGCAGCATTAGCATATGTAAAGCTCATTCAACA CTTAGCAGTCTTTAAAGGATACAAAGGTTAGATTGGTTGCATAAAATTAAATAGAACTTAACTGTTTCTTTTTTATTTGT ACTCTATATTTCCGGGTTTGAATTTGTTTGATTTTGTTTAGTACCTTTGTTTATAATTTGTAAATCACCTGAGTATCGTT TTACAGTTAACTTACTGCAATTTCTTATTGTGCAAATTGCCTTTCTTTTATATGGAGTGATCTTTTCTTTCTTCTTCTTG AATGTTGGTAGAGGGTAAAAAGTCCCGTGACATGCACAAGTTCCTTCTCTTGTCTTTTTTTGGCCTCTTAATGTTCTGGT GTTTTCTTCTCTGTTTGTAGAGGCCTTTTCTGCGCTTAAAATAGCAGAAGAGAAGTTTCTCTCTGTCTCAAAATCCCAAA TGTTACAACTAAAGTTGCAGCTGCTTCATGAGCATGCATTACATCGGTAAGTGGCCTAGGTCAACTGTTATATTCAGAAT CTGAAATTATGTTAGCAATTGAGATTTCATAATTGTTAATAACTTGATTGAGCATATGTAGTGGACGTTTAAAACTAGCC CAGAAGCTATGTGATGAACTTAGTGTTTTGGCATCGCCTGTAACTGGTGTCGATATGGTGCTAAAGACAGAAGCTAGCCT TCGCCATGCTCGCACATTGCTTGCAGCAAAGCAATTCCGAGAGGTTTCTTTTCTCTTATGTGCTAAATTAATTTTATCCC GAAAATTAATGATAGGTTATTCACAGATCACGGCTATTCTTCAATTTTTCGTGCATATGTAATTATTGTTCTTTCATGGG TAACTAGGCATCATAATCTTTAAATATATCTTATACTGATGAATTATGATTGATAAATATGACTATTAATTTTTTTTGGA AAACTTCCTCTTAAACACAAATGTGTGCATTCCCAATATAAGTTGTCTTTATTTGCAATGTTTCAATTTGTATGGGATTT CACTATGGCAGTTGTGGGCAGATATAGTGGTGTAGGATGTAAATAGGTTGTGTTGTTGTCCCGCAAGAAGATGGTCTCAT ACTCATGTTTGATAAGCCAAGCAACAAAAAAAGGATAAATAAAATATATCAAAGGTACTTATGAGTATACTTTATTGGTT TTGGTTCCCCATGCAGCACTAGTGTCCTATAGCTGCCCTGATTTAATCCACCCCATTAATTGTGTGGCATTTGTGTGTAG TCAAGATTGTTAAACCTTTTATCATGGTGTGTCAGAGAAGAGTGTTTGATGAGATCCTAGGTTCTTAGTTTTGTAAGGAG GAAAATGTCTGAAATCAATCACTGTTAGCTAGTGCCAAATAGAACAATAAAAATACATTTATTGTTTTAGTTCTGTATTT AATTACTTCGATTCTTTTTTAGGCAGCTGCTGTGGCACACTCCCTCTTTTGCATGTGCTACAAATACAATCTGCAAGTTG AGAATGCTTCAGTTCTTCTTTTACTTGCTGAGATTCACAAGGTATGTGAATGTGGTGACATTGTCTAAAACACGTGATAG TACATGTAGTAAGGATCAAACTATTTATGGCTGTTATTTGCTCTCTCTCTCTCTCTCATTTTTTTTCATAATTCGTTATC ATAACTTGCTGAGTTTCAATTTACTGCTAGTCCCTAGTGACGCCCCCCCTCCGATTCATCATATAGAAAATAAAAATTGT ATAGAAATAAGAAACATTACATGCGAAGCTAGCCTCTATAAGATCAAAAGGAAAGGGGGTGAGGAGAAAAAGTTCATATG AAATTAAAGTTTGCAAAACTTAAAAGACCTATGCTGATAATGTCTCTCTGCTTGTTATAAGCACTCACCAGCCTCACTAT TTTATTTGCATATTTGTCAGTAATAATGTCTATTTATATGTTTATTCCACTAATCCACTTTGATATAACTATGTGATGGT CATCTTTTTTTCTTTTCTTTTTAGTGCATGATCTAGGACACATTCTAAATTATAACTGAACTGCCCCAGACTACCAACTT TCTCATTGTTGTGTGTTCTCTAGTATTTGTTTACAGTAAAGCCTTCATGTACTTGTTTTTATCAGAAATCAGGCAATGCA GTTCTAGGGCTTCCATATGCTTTAGCAAGCCTCTCATTCTGCACATCATTTAACTTGGATCTTCTAAAAGCCTCAGCTAC TCTTACTCTAGCTGAGTTGTGGCTCTCTCTTGGATCAAACCATGCAACAAGGGCTCTCAACCTCGTCCATGGAGCTTTCC CAATGATTCTTGGTCATGGTGGTTTGGAGCTTCGCTCACGGGCCTACATTGTTGAAGCAAAATGCTACCTTTGCAATACA AACTTCAACAGTGAGTCATGTAGATTGTGGATTTTAGACTACGCTATTCAAGTTTGTTGTCTATATGTGTGTGTGTGTGT GTGTTTACATTTGTAGTTTGAGGAGGATGATTGAATGGTTGTTGAGAAGTTGTGGGTTTAAGATCTAAAACTTCAAATTC AAACTCCAAATAAGTAGAAAGACCACGATCACAGTAAAGCTGTAAAGGTATAAATCTAGTGTTTGGTGGCACTGTCTGGG CCTGTTAAGTATAAGCAGTGAAAATTGTTGGAACATTCATTTTGGAGAATCTACAATTAGGAGATTCAGGGATCCTTTTT AAAAAACTCTCAGACAAGGGAATGGCTTCTCATGAGCCTCCCCTTTCTCCTCTCTCCTCCAAAATCCAACTCACAAACAA AGCCTAGAACTTTTTAAAAATTATTTTGTTAGTTATTTTATTTATAATTAGATCCTAACACTTTCCGAGGGGGTTTAGTC CATTTTCTATTCTCCTTTTCTCCACATGTGGAGGATTTAACTTAATTGTTTGCTCATTTGAATTTCTTTTTCAGTCTTTG AAGATTACAACATTGTTATAGATCCATTAAGACAAGCATCAGAAGAACTCCAACTTTTGGAGGTAAGCAAGCTTTCTGCA TTTGGATCTTGAGTGTAATTTTCCAGTTGTCCTTTTTTATTTCCAAGACAAGAGGAGGCATCTCTGTTTCACGTCAAATT TTACTTGGATGCTTGCATGCGATTCTAAAGTATTACCTAGATTTAAATGGAACCTGAAGTTAATCTTACCTTGATAGGAG TGACTGTTATAATGAAACGTTGAAGAAGGAACAAGTGAGCTATACATCATATCTGGGCGCATAGACTATAAGTGAAGTTT TTTTTAAAGATTGATTTTATAGGTCACAGACATGCAAGATTTATGCTATGCAATGTAGAGAGTAACTGATAAAAATCCCG GCAAGTAAAGTTGAAGTATTAGACATTATTTTCCTGTACTAAATCTCACCTTAACAAGACTTTCTCAATATCAAATCTCT TTCGATTACTTTTGCTGTAATACTTTATTTTTTGGGATTGAAAGATATTTTATATTCCGGTCAAATGTCCATAATGTCCA AGTCTTGAGTACTAATTGGTTGATTGCTCCTTCACTTGACGACATCCTTCTTTTTATGAAATGGTGCTATTGCACTTGTA TGAATGTATTATATGGTGCTTGAGTTCATTTTTGTCATTATGGCGTTATATCTTGTGTCCTCTGCAGTTTCATGAATTGG CGGCTGAAGCTTTCTATCTGATGGCCATGGTATATGATAAACTGGGGCAGTATGAGGAAAGGGAAGAAGCTGCAGCTTCA TTTCAGAAACACACATTGGCTCTCGACAATCCTCAAGATCAGGATGATCCTCTTATTAGCACGTTTTGA
CDS sequence (LotjaGi1g1v0738900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGATATAATTCTTGTTGTTTATACATACATAATGCTTATTTTCATGTTTTTCTCCCCACTGTCTCGGATAAATGC TCTACTGCATGCAACTTGCTTTGCTGATGCATCAAGTTCAGCAGATGCAGCATTAGCATATGTAAAGCTCATTCAACACT TAGCAGTCTTTAAAGGATACAAAGAGGCCTTTTCTGCGCTTAAAATAGCAGAAGAGAAGTTTCTCTCTGTCTCAAAATCC CAAATGTTACAACTAAAGTTGCAGCTGCTTCATGAGCATGCATTACATCGTGGACGTTTAAAACTAGCCCAGAAGCTATG TGATGAACTTAGTGTTTTGGCATCGCCTGTAACTGGTGTCGATATGGTGCTAAAGACAGAAGCTAGCCTTCGCCATGCTC GCACATTGCTTGCAGCAAAGCAATTCCGAGAGGCAGCTGCTGTGGCACACTCCCTCTTTTGCATGTGCTACAAATACAAT CTGCAAGTTGAGAATGCTTCAGTTCTTCTTTTACTTGCTGAGATTCACAAGAAATCAGGCAATGCAGTTCTAGGGCTTCC ATATGCTTTAGCAAGCCTCTCATTCTGCACATCATTTAACTTGGATCTTCTAAAAGCCTCAGCTACTCTTACTCTAGCTG AGTTGTGGCTCTCTCTTGGATCAAACCATGCAACAAGGGCTCTCAACCTCGTCCATGGAGCTTTCCCAATGATTCTTGGT CATGGTGGTTTGGAGCTTCGCTCACGGGCCTACATTGTTGAAGCAAAATGCTACCTTTGCAATACAAACTTCAACATCTT TGAAGATTACAACATTGTTATAGATCCATTAAGACAAGCATCAGAAGAACTCCAACTTTTGGAGTTTCATGAATTGGCGG CTGAAGCTTTCTATCTGATGGCCATGGTATATGATAAACTGGGGCAGTATGAGGAAAGGGAAGAAGCTGCAGCTTCATTT CAGAAACACACATTGGCTCTCGACAATCCTCAAGATCAGGATGATCCTCTTATTAGCACGTTTTGA
Protein sequence (LotjaGi1g1v0738900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDIILVVYTYIMLIFMFFSPLSRINALLHATCFADASSSADAALAYVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS QMLQLKLQLLHEHALHRGRLKLAQKLCDELSVLASPVTGVDMVLKTEASLRHARTLLAAKQFREAAAVAHSLFCMCYKYN LQVENASVLLLLAEIHKKSGNAVLGLPYALASLSFCTSFNLDLLKASATLTLAELWLSLGSNHATRALNLVHGAFPMILG HGGLELRSRAYIVEAKCYLCNTNFNIFEDYNIVIDPLRQASEELQLLEFHELAAEAFYLMAMVYDKLGQYEEREEAAASF QKHTLALDNPQDQDDPLISTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 5 | 5 | - | – | |
TMHMM | 5 | 22 | 18 | - | – | |
Phobius | 6 | 22 | 17 | - | – | |
PANTHER | 20 | 336 | 317 | 7.8E-117 | – | |
PANTHER | 20 | 336 | 317 | 7.8E-117 | ||
Phobius | 23 | 341 | 319 | - | – | |
SUPERFAMILY | 127 | 312 | 186 | 9.73E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | Anaphase-promoting complex | A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B. |
Expression pattern of LotjaGi1g1v0738900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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