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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0748800 |
| Transcript ID | LotjaGi1g1v0748800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP-3 complex subunit mu; TAIR: AT1G56590.1 Clathrin adaptor complexes medium subunit family protein; Swiss-Prot: sp|F4I562|AP3M_ARATH AP-3 complex subunit mu; TrEMBL-Plants: tr|A0A0B2P3M3|A0A0B2P3M3_GLYSO AP-3 complex subunit mu-1; Found in the gene: LotjaGi1g1v0748800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132127509..132132140) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAAAATAAAAAACAAGCTTAAACAAGAAGGGAGTAATACCTTAGTTTTGTCGTTTGGGTGTGGTCTCAAGGAGGAAG AAAGCAGTGTAGCTTGTGAAACGATGAGAACTCCATCTCCTTCATCTTCATCATAAACCTACCTTGTTAGCTTCTTCTTC TTCTTCTTCGGATTTCATACAGAGAGATGTTGCAGTGCATATTTCTTCTCTCCGATTCCGGGTAAGATTGATTGTTGCAA ACCAAAATCTCAAATTCAATTTCTATATTTTTTGAGTTGAATCTCTGAATTTTCGATTCGTTTAGAGAGGTAATGCTAGA GAAACAGCTCACTGGCCACCGCGTAGATCGCTCCATATGTGCCTGGTTCTGGGATCACGCTATTTCTCAACCTGATTCCT TCAAGGTTTGTTTTCCTCATTCTTCTCTTTTTCTCACATTTTTTGCCCATTCTTCTAATTTTATTTAGATTATTTCATTC TCTGTGTGTGTATAGCAACAACCAGTGATTGCTTCTCCAACTCATTATCTTTTCCAAGTTTTTCGTGATGGAATCACTTT TTTGGCTTGCACTCAAGTTGAAATGCCACCATTGATGGCCATTGAGGTATATTTCCAGTTACTTATACCTTATTCGCTTT GCAACTCGTAACAAACTGTATTTCTTTGCTTTTTAATTTTTAACCATATGCTTTTAGTTCCTTTGTAGGGTAGCTGATGT CCTCAAAGATTATCTTGGTGGATTGAATGAAGACGTAATCAAAGATAACTTTGTCATTGTATATGAGGTATTCATTCTGT GACTCATTTGCCCAAATGTTATTAGTTTTTTGCCGTCCTCGTTTGATTTGCGGTTTAGAATTTAGATGTAAAAGTGATTG TTTTGTTTTTGTTATTGTAGCTGCTGGATGAGATGATAGACAATGGCTTCCCGCTAACTACGGAACTTAATGTCCTGCAA GAGATGATAGCTCCGCCAAATATCGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGAAGCTCCAATGTGAGTGACACGCT TCCGGGTGCCACTGCATCTGTTGTTCCCTGGAGAACAGCAGACCCGAAGTATGCTAGCAATGAAGTTTATGTAGATCTTG TTGAAGAAATGGACGCAACAATAAATAGGTCTTTATGCTCTGACATGCTTGTTCTTATTACGCATTTTGCAAGCTTAGTG AACAGGATATAACTGATTCTTGGAAGTTTGAACTTTTGCAACCTAATATGGCTGAACTTTATAAGAAATCATCTTCAGAC TCCTCCTTGGTAGTTTGTATCCTAGGAACCATTGATTTCAACTTCTTTCTTATATACTCGTTGCTAAATAATACTGTTGA TTCAGGGATGGAGTTCTGGTGAAATGTGAGATCAGCGGTGAGGTTCAAGTAAATTCCCAGATCACAGGTCTTCCTGATTT GACCCTTTCATTTGCAAATCCTTCAGTCCTAGATGATGTGAGATTCCATCCCTGTGTTAGATTTCGGCCTTGGGAATCCA ATCAAATTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGGTATTACATCCACCTTTATGTTGAT GTCTGAATTAGGATTTGAATTTTGAAACCTTTGTTTGAGAAGTCAGTTTGGATATAGATATCATTGTGAATGTTGAAATT CATTCCATGATATTCCCAAATTTTGCTTTTTCTAAAAAAATTCTGGCATTCCACCTTTTTTCCAGAGTTAGAAAATTGAA GAGCACCCCAATATATGTAAAGCCACAGTTGACTTCAGATGGTGGGACATGCCGTCTTAGTGTATTGGTTGGCATAAGAA ATGATCCTGGAAAGACAATAGATTCAGTTATTGTTCAGTTTCAGCTTCCCTCTTGCATCTTATCAGCTGATCTGACTTCG AATCATGGAACAGTAAACATCCTTGCTAACAAGGTAGTTAATAATCTCTGCTTACTCTTTATCTATTGTAGAAACTAGGA AGTCAAAATAGTCAGATGAGAACTTTGCTCTATTTGTGCAATAAAATTTGAAGCTTTCTTCATATCTCATTCTATCAGAC ATGCATTTGGACCATTGGTCGGATCCCTAAGGACAAAGCCCCATCAATGTCTGGCACATTGGTACTTGAGACTGGATTGG AGCGCCTTCATGTCTTTCCCACATTTCAAGTGGATTTTAGGATTACGGGTGTCGCCCTTTCTGGTCTGCAAATAGATAAA CTGGATCTGCAGACTGTACCCTACCGTTTCTACAAAGGTTTTCGAGCTCTTACTCGGGCAGGCCAATTTGAAGTCAGGTC ATAATTTTGTTTTTGCCATTAACTCTTCTGAGACTTGTCATGATCCTGGACATGAAATTTCGTTGTGTGTACATGTCTGG TTTCATTTGCAAAGTAAGTTGGTATTTTTTTTTTCTGGTTTCAAATTATGTCCATAGTGAACCATATCCTGGTTATCTGA ATTATCCTGGTTTTGTGAGAGTCAAACCCTTGTCTTTTGTGTCTTTTTTCCTTTCAAAAATTGGTATCAGTGAGAATGAA TGATTTAGATGGATAGGTGATCTCCACTACTTCATCTTATCTGTATGCAGCCTAAATTTTAGATGTGAAACACTACCATT TCAGTATCAATTGATTTATGGAGCAAGGAACCTTCAATTGTTCCAAGTAAGTAAAAGATCAGATGAATAGGGTCAAACTT ACATACAGTTCCTTAGGTTCTGGTGGTACTGTTGTCCAACGAAAATGTGACAGGTGTATTAAAAATATTTACTTAAGTGA ACCGTTACCGTTACCGTGAAAAAAAAACCTTGTATTAAAGGAAAAAAAGACCCACTTCTTCTCTCTCCATGTTTCACCAG CATTGTGACCAAGAAAGAGATGTAAAACAGTAAAAGGGAGAAGAAGGAAAAAGAAGAGAAAAAGAGAAAGAGAGTGGAAG GAGGAGAGTGGAAGGAGGAGAAGGAAGTTGGCGGCGACGATCTAAAGATGGAGAGCCACCAGAACCTGGGAGACTTGCGA CTTTGATGGCGTAGGCAACCACCGCGGTGAGCAGCAGCGAGGTGGTGGGCAGCGGCTGTTTCAGGCGCGTACGGCGGCGG CGGCGTGGAGCTCCTTCAGCGACAGGTTCAAGGGCTTTAGCGGTGGCTCTTATTTCCCATTAGAGTCTTCTCAACTTCCC CACTCTCCCTCTGCTCTGTTTTGCAATTCAAAATTTCTGAATCCATGGCTAGCGTTAATGTCGAAGCAGTTACTGATACA GAGAAAGTTGATGAATTTGGCTAAAAAATCACAACCCCACTTCGAGTGTGCTCCAAAAATTTGATCTTTTTAAGGTTACA AGTCAAGAATTTGAATGGGGTTTTACACCAGTAGTGATGAATTTGGTTGAATAATCACACCCCTACGAGTTTGTTCCAGA AATTTGATCTTTTTGAGGTTACAAGCCATGAATTTGAACGGGTTTGGTTATGGATTTGGGAAAAACCATGGTCTAGGGGA GAGAGCAGTGAAAGTAGCAGAGACTTTACGGAAAAAATGGTAAGTTAACGGAGTTAGTTTGGGTGAGAAAATTAATCCAC ATGTCATATTTTCATTGGAGAACAGTAGCAACAGCACAAATGGTACTGCACTTAAGTTTTTCCCAGATGAATAATGATTA AGCACAATTTGAGCATATCCTTTTCCTGAAGCAATTTGTAGCACCTGCAATTTCAACTCATAAAGATGCATCTCCAAGAA CAGATGTACCACCCCGGTATTGTGGCATAATAGGGAGCTCATTCTTGTTAGCATATTACTTTGTGTTTACATAGCAACGG AAACAATAGATTCAATTAATCAATTGATGTAATTTTGTGATTAGGAGTGAGAAAGCAATATTATTCTGAAACAAAAGAAC TCCAAGGAAAGATGGCGGATATGGCTTATGAGAAATTCCTTCAACATGGACTGCTTATCCAACATGATTTCAAGATCAGT TATTGTGGGAACACAATGTTTATAGACAGCCATCAATCTTAAAATTTTGATTGATAGTTCCTATAAATAATGTGTCCATG TAAAAATTACTATAATTAATCAGCACTTTTTCTGTATATTGCTCTCAATGTATGAATCTATGCTAATCCTACAACTAGTT CCATGTGATAATACATGTCAGACTCATCATTGAGACAAAATAATAAACGTCTGATGTTTTGAATGTAGTTAACCAACCTC AACTTGGTAGTATAACTTGCCATCATTATCCACTCTTGAAGTTGTAAAAAGAATATTTGATTCATTCTAACGCCAAGTCT TTATATGTGAATAATAGTTTTGACAGGAATCACATTTTAGAAAATTAATTGTATATTGGATTTGATAATTCTCCACATGA TAATAACAAGAATGAGAGAAGAGATTTACTTGGATCCATTCCTTTGATTTTCAATATACGTACATAACACAATAATACTT AAAGCAAGCAAAAAGAAAACTTTAATCCAATCCTCAAGTGTCGTAACAATATAAGCATTGTAATCATATGTATAAATACA TATTATACTACATCTATATTACTCATTTCTTTAACAAAGCTAGAAAACATTTTGGACAGTAATCTACCAATA
CDS sequence (LotjaGi1g1v0748800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGTGCATATTTCTTCTCTCCGATTCCGGAGAGGTAATGCTAGAGAAACAGCTCACTGGCCACCGCGTAGATCG CTCCATATGTGCCTGGTTCTGGGATCACGCTATTTCTCAACCTGATTCCTTCAAGCAACAACCAGTGATTGCTTCTCCAA CTCATTATCTTTTCCAAGTTTTTCGTGATGGAATCACTTTTTTGGCTTGCACTCAAGTTGAAATGCCACCATTGATGGCC ATTGAGTTCCTTTGTAGGGTAGCTGATGTCCTCAAAGATTATCTTGGTGGATTGAATGAAGACGTAATCAAAGATAACTT TGTCATTGTATATGAGCTGCTGGATGAGATGATAGACAATGGCTTCCCGCTAACTACGGAACTTAATGTCCTGCAAGAGA TGATAGCTCCGCCAAATATCGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGAAGCTCCAATGTGAGTGACACGCTTCCG GGTGCCACTGCATCTGTTGTTCCCTGGAGAACAGCAGACCCGAAGTATGCTAGCAATGAAGTTTATGTAGATCTTGTTGA AGAAATGGACGCAACAATAAATAGGGATGGAGTTCTGGTGAAATGTGAGATCAGCGGTGAGGTTCAAGTAAATTCCCAGA TCACAGGTCTTCCTGATTTGACCCTTTCATTTGCAAATCCTTCAGTCCTAGATGATGTGAGATTCCATCCCTGTGTTAGA TTTCGGCCTTGGGAATCCAATCAAATTCTTTCCTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTTAG AAAATTGAAGAGCACCCCAATATATGTAAAGCCACAGTTGACTTCAGATGGTGGGACATGCCGTCTTAGTGTATTGGTTG GCATAAGAAATGATCCTGGAAAGACAATAGATTCAGTTATTGTTCAGTTTCAGCTTCCCTCTTGCATCTTATCAGCTGAT CTGACTTCGAATCATGGAACAGTAAACATCCTTGCTAACAAGACATGCATTTGGACCATTGGTCGGATCCCTAAGGACAA AGCCCCATCAATGTCTGGCACATTGGTACTTGAGACTGGATTGGAGCGCCTTCATGTCTTTCCCACATTTCAAGTGGATT TTAGGATTACGGGTGTCGCCCTTTCTGGTCTGCAAATAGATAAACTGGATCTGCAGACTGTACCCTACCGTTTCTACAAA GGTTTTCGAGCTCTTACTCGGGCAGGCCAATTTGAAGTCAGGTCATAA
Protein sequence (LotjaGi1g1v0748800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQCIFLLSDSGEVMLEKQLTGHRVDRSICAWFWDHAISQPDSFKQQPVIASPTHYLFQVFRDGITFLACTQVEMPPLMA IEFLCRVADVLKDYLGGLNEDVIKDNFVIVYELLDEMIDNGFPLTTELNVLQEMIAPPNIVSKVLSVVTGRSSNVSDTLP GATASVVPWRTADPKYASNEVYVDLVEEMDATINRDGVLVKCEISGEVQVNSQITGLPDLTLSFANPSVLDDVRFHPCVR FRPWESNQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLTSDGGTCRLSVLVGIRNDPGKTIDSVIVQFQLPSCILSAD LTSNHGTVNILANKTCIWTIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVDFRITGVALSGLQIDKLDLQTVPYRFYK GFRALTRAGQFEVRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 414 | 414 | 1.7E-159 | – | |
| SUPERFAMILY | 1 | 142 | 142 | 2.38E-36 | ||
| Gene3D | 1 | 143 | 143 | 4.7E-43 | – | |
| PANTHER | 1 | 414 | 414 | 1.7E-159 | – | |
| PIRSF | 1 | 415 | 415 | 2.7E-105 | ||
| CDD | 3 | 142 | 140 | 9.98137E-66 | – | |
| PRINTS | 100 | 127 | 28 | 4.2E-22 | ||
| Pfam | 167 | 414 | 248 | 2.8E-62 | ||
| ProSitePatterns | 167 | 187 | 21 | - | ||
| SUPERFAMILY | 167 | 414 | 248 | 1.96E-68 | ||
| CDD | 167 | 414 | 248 | 6.59801E-115 | – | |
| Gene3D | 168 | 410 | 243 | 8.6E-73 | – | |
| ProSiteProfiles | 178 | 414 | 237 | 31.299 | ||
| PRINTS | 230 | 257 | 28 | 4.2E-22 | ||
| Gene3D | 272 | 413 | 142 | 8.6E-73 | – | |
| PRINTS | 337 | 348 | 12 | 4.2E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Clathrin adaptor complex | A membrane coat adaptor complex that links clathrin to a membrane. |
Expression pattern of LotjaGi1g1v0748800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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