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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0752600 |
| Transcript ID | LotjaGi1g1v0752600.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translation initiation factor IF-2; TAIR: AT4G11160.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp|Q5FQM3|IF2_GLUOX Translation initiation factor IF-2; TrEMBL-Plants: tr|I1NBL5|I1NBL5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0752600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132503068..132506115) extracted from Lotus japonicus Gifu genome v1.2.
TCAGCTATTGGTGAAAATGGCAAAGCTAAAGTTTATTTGGTTGTTGTTGAAACAAATAAGTGGCATTAGTTGAAATTTTG TACTATATGAATATTTAAAACTTATATTTAAGTAGTTGCTTGATGGAAAAAGAAAAGATATAGAGGTAATTAGTTTACTA TATGATAGGTGCTTCCATACTAGCTCACAAGTTTGGGCAAGAAGTGGTGAGACATTTGGTTTGAAGACCCCAAAAAAGGA GAAGTATGTTAGAAAAGAGAGTAGAAACCAGCCTCCTGTTGAAGCTCCATATGTCCCTCGTAACGTCACAGCTACCAAGT CTAATCCTGTTAAAACAGTAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCT TCATTGCAGGATATCCTCACAAATGTCGGTGAAAAGGTTGGATCAGAGTTTGAGCCTCTCAGCATGGATATTTCAGAGCT TGTTGCACTGGTATTTCCTCCTTTTAAACCTGTGAATATAGGAAACTGGTACCTTCTTTTAATCCCATTTCTTGTTCGTT GGTCCTTCCCATTTGTAAAAATGGCTACTTCTTACGAAAATATCATATACCCCATTTTACTCATTCTTCTCTTTCAGTAT ATATATGAAGTTAGCTTTATTTTTTTAAATAGTGGTTTGGGATTAAGTCTTCAAACTCTTCTTATTTCTTTGTTTTGATG TGATATGGTGCAGATCAATGTATCTTGATGAAGTATCTCACTTGAAATTAGTTGGCATTAGGTATTCATTATTGTGCATA CCCATATCTGTTGATACGATGTGCATAGAAAAATAAATGAGAAAGTCAAAACAGATAAGACTAGGCTGAAATATTGGTTG CTAGATTTGGATAAATATTTATTTTATTTCCGAAAAATCATTGAAGAGGATATTCTTGCAAAAAAATTATTTGTTTTCCT GCATTAAGGATCATTGTCTCAAAAGCTTCTTTCCCACCCTCCACCCCTTTCTTTTCTCTAATTTGCTACATGATGCATTT TTAGTTTCTGTTTATTGATTCGTTTATCAGTCTGGCATGGATGTTTTTATTTGGCCATCTTGTTTGGGCTACTGGTTTTA TGTTTTTTCACTGAATTAGCTCATCGCTGCTGCAGGAGGTTGGTGTCAATGTTAAGAGGCTACATTCAACTGAAGGTAAT GAGGTTTTACCACGGCCTGCAGTTGTGACAGTTATGGGTCATGTAGATCATGGTAAAACTTCTCTTCTTGATGCCTTGCG TCAAACATCAGTTGCAGCCAAGGAGGCCGGTGGCATAACTCAGCATATAGGTGCCTTTGTGGTGGTCATGCCTTCAGGAG CATCAATCACATTTCTCGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCGGCAGTCACAGATATA GTAGTGCTAGTTGTTGCTGCAGATGACGGTGTGATGCCTCAGACTCTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGT ACCAATTGTAGTTGCAATTAACAAATGTGATAAACCGGGTGCAAATCCTGAAAGAGTAAAATTGCAGATGGCTTCAGAGG GCTTGCTGCTGGAGGAGATGGGTGGTGATATTCAGGTTGTTGAAGTTTCAGCAACTGCAAAAACTGGACTGGATAACCTA GAGGAAGCTTTAGTCCTTCAGGCTGATATGATGGAGCTTAAAGCACGGGTTGACGGGCCTGCTCAAGCGTATGTGGTGGA AGCAAGACTTGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGAACTCTAGTTTGTGGCCAGTATGTGG TTGTAGGCTCACAATGGGGAAGAATAAAGGCTATCAAAGACATGGTAGGGAGGTTAACTCAACGAGCAACTCCTGCAATG CCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTCG AATGCTTAGTTCCGGTAGGAAAAAGAAAGCTGAGGAGGATAGGCTTAGAAACAAGATGATACCGGACAATCCAACTACTT CAGATGATTCTGTGGAGGTTCCACTGACGGTTGAATTGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCT GTCACAGATTCATTGAAAACTTTAAATAGTCCTCAGGTATGTAAAGATTATAGAAACATGGTAAACTTTTCTTTTTGCAT ACACATATGCATGCTCAATACTTAGTTATCATGAACTTTTAAGTTTGTTGTGTTGCTTTTATTTGTTTTTTTTTTTTGAC AGAAGCTTTTATTTGTTGCTATAAACATTGTGTAATTTTATTGGCAGGTGTTTGTGAATATTGTCCATGTTGGTGTTGGG CCGATTTCTCAATCTGATGTGGACTTAGCAAAGGCTTGTGGTGCGTGCATAGTTGGATTCAATATCAAGAGTCCGCCTAC TTCTATTACCCAAGCAGCAACTCGTTCTAACATCAAGGTATTAACTTAGCTTATGCTCACATGTGATTGTGGTAAGATCC TATGACAAGAAAATTTTGATAATTGTGCAAGATATATCTGTTTGGTTTTGTTGTAGGTAATTCTGCACCGCGTGATTTAT CATCTGTTGGAGGACATAGGCGATGTGATAATAGAGAAGGCTCCTGGGACTTCTGAGACCCATGTATCTGGGCAAGCAGA AGTGTTGAATATCTTTGAGGTCAAAGGGAGCAAGACCAAGGGACCTGATGTGAAGATAGCGGGTTGTCGGGTTGTTGATG GTTTTGTAGCCAGGTCAGGAACCATAAGGCTCCTGAGGAGTGGGGAAGTTATGTTTGAAGGACCGTGTGCATCTCTTAAG CGTGAGAAGCAGGATGTGGATACTGTGAAAAAGGGTAATGAGTGTGGGCTAGTCATCAGTGACTGGCATGATTTCCAGAT TGGAGATGTCATCCAGTGCTTGGAACAAGTCATAAGGAAACCCAAGTTCATCAAGTCAGAGAGTGGTGCTGTTCGAATTG AGTGCTGA
CDS sequence (LotjaGi1g1v0752600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCATTGCAGGATATCCTCACAAATGTCGGTGAAAA GGTTGGATCAGAGTTTGAGCCTCTCAGCATGGATATTTCAGAGCTTGTTGCACTGGAGGTTGGTGTCAATGTTAAGAGGC TACATTCAACTGAAGGTAATGAGGTTTTACCACGGCCTGCAGTTGTGACAGTTATGGGTCATGTAGATCATGGTAAAACT TCTCTTCTTGATGCCTTGCGTCAAACATCAGTTGCAGCCAAGGAGGCCGGTGGCATAACTCAGCATATAGGTGCCTTTGT GGTGGTCATGCCTTCAGGAGCATCAATCACATTTCTCGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAG GTGCGGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGACGGTGTGATGCCTCAGACTCTTGAAGCCATGTCC CATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAACAAATGTGATAAACCGGGTGCAAATCCTGAAAGAGTAAA ATTGCAGATGGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGTGATATTCAGGTTGTTGAAGTTTCAGCAACTGCAA AAACTGGACTGGATAACCTAGAGGAAGCTTTAGTCCTTCAGGCTGATATGATGGAGCTTAAAGCACGGGTTGACGGGCCT GCTCAAGCGTATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGAACTCT AGTTTGTGGCCAGTATGTGGTTGTAGGCTCACAATGGGGAAGAATAAAGGCTATCAAAGACATGGTAGGGAGGTTAACTC AACGAGCAACTCCTGCAATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCTGGTGATGATGTTATTGTTGTT CATTCTGAGGAGCGAGCTCGAATGCTTAGTTCCGGTAGGAAAAAGAAAGCTGAGGAGGATAGGCTTAGAAACAAGATGAT ACCGGACAATCCAACTACTTCAGATGATTCTGTGGAGGTTCCACTGACGGTTGAATTGCCAGTAATTGTAAAAGCAGATG TTCAGGGAACTGTTCAAGCTGTCACAGATTCATTGAAAACTTTAAATAGTCCTCAGGTGTTTGTGAATATTGTCCATGTT GGTGTTGGGCCGATTTCTCAATCTGATGTGGACTTAGCAAAGGCTTGTGGTGCGTGCATAGTTGGATTCAATATCAAGAG TCCGCCTACTTCTATTACCCAAGCAGCAACTCGTTCTAACATCAAGGTAATTCTGCACCGCGTGATTTATCATCTGTTGG AGGACATAGGCGATGTGATAATAGAGAAGGCTCCTGGGACTTCTGAGACCCATGTATCTGGGCAAGCAGAAGTGTTGAAT ATCTTTGAGGTCAAAGGGAGCAAGACCAAGGGACCTGATGTGAAGATAGCGGGTTGTCGGGTTGTTGATGGTTTTGTAGC CAGGTCAGGAACCATAAGGCTCCTGAGGAGTGGGGAAGTTATGTTTGAAGGACCGTGTGCATCTCTTAAGCGTGAGAAGC AGGATGTGGATACTGTGAAAAAGGGTAATGAGTGTGGGCTAGTCATCAGTGACTGGCATGATTTCCAGATTGGAGATGTC ATCCAGTGCTTGGAACAAGTCATAAGGAAACCCAAGTTCATCAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA
Protein sequence (LotjaGi1g1v0752600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLVELAKRTGKSVSSLQDILTNVGEKVGSEFEPLSMDISELVALEVGVNVKRLHSTEGNEVLPRPAVVTVMGHVDHGKT SLLDALRQTSVAAKEAGGITQHIGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMS HAKAANVPIVVAINKCDKPGANPERVKLQMASEGLLLEEMGGDIQVVEVSATAKTGLDNLEEALVLQADMMELKARVDGP AQAYVVEARLDKGRGPLVTTIVKAGTLVCGQYVVVGSQWGRIKAIKDMVGRLTQRATPAMPVEIEGLRGLPMAGDDVIVV HSEERARMLSSGRKKKAEEDRLRNKMIPDNPTTSDDSVEVPLTVELPVIVKADVQGTVQAVTDSLKTLNSPQVFVNIVHV GVGPISQSDVDLAKACGACIVGFNIKSPPTSITQAATRSNIKVILHRVIYHLLEDIGDVIIEKAPGTSETHVSGQAEVLN IFEVKGSKTKGPDVKIAGCRVVDGFVARSGTIRLLRSGEVMFEGPCASLKREKQDVDTVKKGNECGLVISDWHDFQIGDV IQCLEQVIRKPKFIKSESGAVRIEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 580 | 580 | 0.0 | ||
| PANTHER | 1 | 580 | 580 | 0.0 | – | |
| Hamap | 2 | 571 | 570 | 13.235 | ||
| TIGRFAM | 5 | 570 | 566 | 6.0E-175 | ||
| Gene3D | 62 | 236 | 175 | 3.9E-67 | – | |
| ProSiteProfiles | 64 | 234 | 171 | 48.23 | ||
| SUPERFAMILY | 65 | 255 | 191 | 7.65E-47 | ||
| TIGRFAM | 67 | 220 | 154 | 6.1E-29 | ||
| CDD | 68 | 231 | 164 | 3.16982E-96 | – | |
| Pfam | 69 | 226 | 158 | 8.5E-32 | ||
| Gene3D | 237 | 350 | 114 | 1.1E-31 | – | |
| SUPERFAMILY | 238 | 320 | 83 | 7.51E-18 | ||
| CDD | 240 | 335 | 96 | 5.83493E-35 | – | |
| Gene3D | 363 | 466 | 104 | 2.5E-29 | ||
| Pfam | 364 | 456 | 93 | 2.4E-29 | ||
| SUPERFAMILY | 365 | 473 | 109 | 5.75E-26 | ||
| Gene3D | 468 | 570 | 103 | 1.9E-29 | – | |
| SUPERFAMILY | 469 | 570 | 102 | 8.48E-23 | ||
| CDD | 474 | 563 | 90 | 4.10196E-33 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi1g1v0752600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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