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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0753800 |
| Transcript ID | LotjaGi1g1v0753800.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-like transcription factor; TAIR: AT4G01680.1 myb domain protein 55; Swiss-Prot: sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86; TrEMBL-Plants: tr|V7CYS2|V7CYS2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0753800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132693883..132696627) extracted from Lotus japonicus Gifu genome v1.2.
AAAACAGAGAAAGAAAAACAGGTATTTTTATTAATAAAATAATAACTTCATTCCAATTTAAGAGAAAATAAACAAATCAA GGTGTAGGAAAAAAACAACAAATAGAAAGACACCTATACTTTTTTAGAGAGAAAAGAAAGCAATAGAAGGAAGGAAGCTT AATAACAATGACATCTCTCATGGGGCCTGGCTCTTATATTAAATTCAAATCCTTTTTCTCTGAACCCACTTCATTTTCTT TTCTTTCCTTCATATAATCTCTTTCTCTCACTCTCATAATACTTTACCTGTCACACTCTGGATTCAGTGCTGACATTTCT CCCAGAAATTCAACAAGCAAAAGCTTTCTGTTATCCACAAAATTTCACTCCTCATTGTGTGTTAACTTGCAAGCTGACAC ATGGGAAGACACTCTTGCTGTTATAAGCAGAAGCTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTTTGAG ACATATTACTATGTATGGTCATGGATGTTGGAGTTCAGTTCCTAAGCAAGCAGGTACTCCAACTCTTTCTCCTTCACAAC ACGTTTGGTTTCACGGTGAAATGTTCTAGAATCAAATTCTAATCAAAACTTACATGTTTTAACTTCTGAGTAAATGCGTC TTAGATTCTGTGCTGAGACTTAATATGTTATTAATTAATCTCCTTTACTAAATATACATAAACTGGTTTTCATTTCCATG TCAATGTGGTTCCATGGCAGGTTTGCAGAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAACTACTTAAGGCCTGATT TAAAGAGAGGTGCATTTTCACAAGAAGAGGAAAATCTCATCATTGAACTTCATGCAGTATTAGGGAACAGGTAAGTAAAT CTCATCTTTCTTCTCCAAAAAAAAATCCATTTTTCTTTGCTCCTGTGATTAATCTTTTAATAGCATAGTTGTATCTGCTT ATTTTCTCGCAGAATCAATTATGGCATCCATTATCCATGATTCATTTTGACTCTAGAATCAATTGTTGAAGGATTTACAT ATATACTATGAAACACTCATCCTATCTGGCCTAGTTAACTTTTTATGGTTTATTGACAGATGGTCTCAAATTGCAACACA ATTGCCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAACTCAGGCAAAGAGGTATAG ACCCTGTCACTCATAAACCACTGTCTGAGGTTGAAAATGGAAAAGAGGACAAAAACAAGAGCCAAGAGAAAGTTTCCAAT GAATTGAACCTCCTGAAATCAGAGAGTTTCAAGTCTGATGCAGCTTCGTATGAACAGAATTCCTCTTCAATTGCCCCAAA GGCTTATACAACTGAGATGGAAGGTTCTTCCAGCTCCAATTGTTCTAGTAAAGACTTGCTCCTAGACAGGTTTATGAGCC AACCCCAAAATTTGATGGGAAATTATTACCCCCTTCAAATGAGTTTTGCATCCACTGATAGTGCCCCAACCAATTCAAAC TCTTGTCATTGGTTCAGCCAAATTGGGAGGCCCTCTGATGTGAACTCTGAATATGCTTCTAATATTATGTCTATTCTTCC CCCAACTAGTTCTTTTTGCTACAAACCATCACTTCCCGTTCCCTTAGAAGATATTTCTACACCCTCTTTTGCTGTGAATG GATCCAATTACTGGGAAGCCAGTGCTTCCAACAATAGCAATAGCAGCAACACAAGTGATGGCATTGGCAGCAGAGAGCTG TCAAGTAGCAACATCCTTTCTTCTTCTTCTTGGGGTTTGACAGATTGTAGCTCCTCTACTGAAGAAGCCAAGTGGTGTGA GTACCTTCAAAACCCAATGTTAATGCTGGAAGCTGCACAAAATCAAACACCTTCCAAGCATTTGGTGCCTGATACTTTAG GGGCCATGTTGCCTCATTCCAAGCAGCAAGAAGAACCTTCCCAAAGTTCTAGTATCTTTTCCAAGGACCTCCAGAAGCTA ACAGCAGCCTTTGAAAATATATAGCAGCAGGTTTGACATGAAGAAAGATTTTAGAGGCTCCAAGGGATCTCTGCTCATAA TACATAGCATGTTTGGTTCTGGGGTAGAAAGGGATATGACTTTCCTGCAGTTACATTTTAATAAAGCCACTGCAATAACA GTTCCATAGCTGCTTGATCAAGATTGAACTGTTCAAATTTAAATTCACATTTTATATGTATAATTAATCTCTTTAAATCT AAGTGGTCCGATCTTGATGAAATAGCTATGGAGCAATGACTGCAGTGAATTTAGGAAAATTCAACTGCATCAAATCCAAA TACATACTGATGGCAATGTCAATCCAAACATGCTATAAGGTGGGGTGTGTAACCAAAGATTTTGCATTTGTATATAGGTG TGTCACAGAATATTTCTTTCACCCTCTTTGCCTTTGGTAATATTTGTGTGCCAAATCATTTGTCTTAATTAGCCTTCTAG GGTGTGGGTAGAATTGCCTAATAAAGATTGCTCTGCCTTGTTTTTCTTATACTCTTTCATTGCAATAATGCATTTGTGCA ATTTCCATATCTATACCATGAGAGATTTCATTTGTGCAAGGGAAGTTTCCCTTTTGTTTCAAATGGTTGGGACATACACT CCACTATGTGCAGTCAGCACTTACCAAATCCAAGGTTCAAAAGGTTGCCCCATCATTTTCTTGACAGAAGCATAATTTAT TCAGTCCCATCTCAGCAAGTTTTCA
CDS sequence (LotjaGi1g1v0753800.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGACACTCTTGCTGTTATAAGCAGAAGCTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTTTGAG ACATATTACTATGTATGGTCATGGATGTTGGAGTTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGCTGCA GGCTTAGGTGGATCAACTACTTAAGGCCTGATTTAAAGAGAGGTGCATTTTCACAAGAAGAGGAAAATCTCATCATTGAA CTTCATGCAGTATTAGGGAACAGATGGTCTCAAATTGCAACACAATTGCCTGGGAGGACTGACAATGAAATAAAGAATCT GTGGAATTCTTGCTTGAAGAAGAAACTCAGGCAAAGAGGTATAGACCCTGTCACTCATAAACCACTGTCTGAGGTTGAAA ATGGAAAAGAGGACAAAAACAAGAGCCAAGAGAAAGTTTCCAATGAATTGAACCTCCTGAAATCAGAGAGTTTCAAGTCT GATGCAGCTTCGTATGAACAGAATTCCTCTTCAATTGCCCCAAAGGCTTATACAACTGAGATGGAAGGTTCTTCCAGCTC CAATTGTTCTAGTAAAGACTTGCTCCTAGACAGGTTTATGAGCCAACCCCAAAATTTGATGGGAAATTATTACCCCCTTC AAATGAGTTTTGCATCCACTGATAGTGCCCCAACCAATTCAAACTCTTGTCATTGGTTCAGCCAAATTGGGAGGCCCTCT GATGTGAACTCTGAATATGCTTCTAATATTATGTCTATTCTTCCCCCAACTAGTTCTTTTTGCTACAAACCATCACTTCC CGTTCCCTTAGAAGATATTTCTACACCCTCTTTTGCTGTGAATGGATCCAATTACTGGGAAGCCAGTGCTTCCAACAATA GCAATAGCAGCAACACAAGTGATGGCATTGGCAGCAGAGAGCTGTCAAGTAGCAACATCCTTTCTTCTTCTTCTTGGGGT TTGACAGATTGTAGCTCCTCTACTGAAGAAGCCAAGTGGTGTGAGTACCTTCAAAACCCAATGTTAATGCTGGAAGCTGC ACAAAATCAAACACCTTCCAAGCATTTGGTGCCTGATACTTTAGGGGCCATGTTGCCTCATTCCAAGCAGCAAGAAGAAC CTTCCCAAAGTTCTAGTATCTTTTCCAAGGACCTCCAGAAGCTAACAGCAGCCTTTGAAAATATATAG
Protein sequence (LotjaGi1g1v0753800.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITMYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEENLIIE LHAVLGNRWSQIATQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGKEDKNKSQEKVSNELNLLKSESFKS DAASYEQNSSSIAPKAYTTEMEGSSSSNCSSKDLLLDRFMSQPQNLMGNYYPLQMSFASTDSAPTNSNSCHWFSQIGRPS DVNSEYASNIMSILPPTSSFCYKPSLPVPLEDISTPSFAVNGSNYWEASASNNSNSSNTSDGIGSRELSSSNILSSSSWG LTDCSSSTEEAKWCEYLQNPMLMLEAAQNQTPSKHLVPDTLGAMLPHSKQQEEPSQSSSIFSKDLQKLTAAFENI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 327 | 327 | 2.3E-137 | – | |
| PANTHER | 1 | 327 | 327 | 2.3E-137 | ||
| ProSiteProfiles | 9 | 61 | 53 | 18.516 | ||
| Gene3D | 11 | 67 | 57 | 1.6E-18 | – | |
| SUPERFAMILY | 12 | 108 | 97 | 4.12E-29 | ||
| SMART | 13 | 63 | 51 | 7.4E-13 | ||
| Pfam | 14 | 61 | 48 | 2.0E-14 | ||
| CDD | 17 | 61 | 45 | 2.06986E-11 | ||
| ProSiteProfiles | 62 | 116 | 55 | 26.199 | ||
| SMART | 66 | 114 | 49 | 3.4E-13 | ||
| Pfam | 67 | 111 | 45 | 1.2E-12 | ||
| Gene3D | 68 | 149 | 82 | 4.7E-20 | – | |
| CDD | 69 | 109 | 41 | 1.24103E-9 | ||
| MobiDBLite | 122 | 149 | 28 | - | – | |
| MobiDBLite | 122 | 145 | 24 | - | – | |
| Coils | 136 | 156 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0753800.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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