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LotjaGi1g1v0770200.1

Overview

Field Value
Gene ID LotjaGi1g1v0770200
Transcript ID LotjaGi1g1v0770200.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 26S protease regulatory subunit-like protein; TAIR: AT1G09100.1 26S proteasome AAA-ATPase subunit RPT5B; Swiss-Prot: sp|O04019|PS6AB_ARATH 26S protease regulatory subunit 6A homolog B; TrEMBL-Plants: tr|G7I8P7|G7I8P7_MEDTR 26S proteasome regulatory particle triple-A ATPase protein; Found in the gene: LotjaGi1g1v0770200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:134258735..134262697) extracted from Lotus japonicus Gifu genome v1.2.

GTTAAGTGCGAGAGTTCTTGAATCACCTAGGTAACTCTTCTCCATTTACATAATGAACTTGTGAATTTCATGTTAACCTT CTACTAAACAACCAAACAAAATCAAATAATGGAAAAGATAGAACATTTCATAAAGTTATGATGAGCTTTGGTTCCTTTAA AATTTCTTTCATTAGTTTTGATCATACTCTGATACTGGGCCTATAATAATTGTCCAGAAAAAAGACCTCAGCCCACTACT ACAATCCGGCCCACAAAATCCGTTTCACAACTATAGAAGAAGAGAAAAAGGGGATTTCGCGAAGAATTGCCCTCTCGAAC AAGTTTGTGTTGTGTGTGGATCAAAAGCAGTTGAATCGCAGAGCAATTAGGTTACAGTGAGTGATGGCGAGCGCTATGCT AGAAGATACCAACATGGAAGACGATCAACTCGCGTCTATGTCCACCGACGACATCGCCAGAGCTTCTCGTCTTCTCGATA ACGAGATTCGCATTCTCAAGGTCGAGATTTCTAATTCTTGTTAGATTCAATGCGTAGCGTCTTTGTTTTCATGTTTTCTT GTTGTTGAATTGTTTGTGAATTTGTGTTTGAAGGAAGAGTTGCAAAGAACGAATCTGGAACTGGAATCGTTCAAGGAGAA GATTAAAGAGAATCAGGAGAAGATTAAGCTTAATAAGCAGTTGCCCTATCTCGTTGGTAACATTGTTGAGGTTAATTTCC CATCGCCCACTCGTTCTTCCTTCTCTTCTATGTTATTGATGTTCTTTTTAGCCTAGAATTAAATTGCAGAACTATTTTGA AGTAGTGAGGTTGAACTCCATAGGAATTTAGACTCTAAATTTGACCCCTTTCCACTATAGGGTTTACTGGGGAATCTCTG GTGTTGATAAGTTGATAACTAATTGTTTACTTCAGTGTTTTTTTTTTCTTTTAAAATTTGTCATGTATCATTGTTCATTT TGTTGCATTTGCTACAATTAGCCTAGGGTTTGATTCCATATTTAAAGTTGATCTATCAAGATGAAAAGGGTAATCAGTGA TTGAATATGTTGGAGATCTAACTTGGTTTTTTTCCTCCCCCTACATTTAATGTTCTTTCAAATTGTTGTGACATGGTGTT TCTGTATTTAGATATTGGAAATGAACCCGGAAGATGAAGCTGAAGAAGATGGGGCCAACATTGACCTTGACTCCCAAAGG AAGGGAAAATGTGTTGTGCTAAAGACATCTACTCGACAGGTGACAAAGCTGATAATTTCATCTTTTTTACAGCTATTTAA TGTTTCCATATTTCAAATTTAGTACTGTTTTTGCTTTTCTTTTGCGTCCCCAGAAAATCATAATGGACTTGGAGTTAGTT GACAAATGAATTCCCTTAATATAATTGATTTTGATAATGAAGTATGTTTGCTTTTGAATACAGACAATCTTTCTTCCTGT TGTTGGGCTTGTCGACCCTGACACGTTAAAACCTGGGGATTTGGTTGGCGTTAACAAAGATAGTTACTTAATCTTGGATA CGCTGCCTTCTGAGTATGATTCTCGAGTTAAAGCCATGGAAGTCGATGAAAAACCGACAGAGGACTACAATGACGTTGGT GGGTTAGAAAAGCAGGTATGATTTAATTACTGGGAATATGTTAAAACTTAAAACACCTTTAATTTTTTCTTTTTGTTATT TATGGTTGGGTAACAGGGTTTCTGTGATAATAACTTGATATTTGCCAACAGATCCAAGAATTAGTAGAAGCCATTGTTTT GCCAATGACCCATAAGGAGCGGTTCCAGAAATTAGGAGTTCGCCCACCAAAAGGAGTGCTCTTATATGGACCTCCAGGGA CTGGAAAAACATTGATGGCTCGTGCTTGTGCAGCACAAACCAATGCCACTTTTCTTAAGCTGGCTGGACCCCAGCTGGTG CAGGTATGGCCCTTCCCAATATTGTTTTCCTCTTAGCTCATCGTGGCTAATGATTTCATTGTTGCTTATTTGTTAACTTT TTCTCCTCTTCGTTATATAACTCAGTAGTTAGTATTTTCTGTTTTGCTGGATTTCACGGGCATGCATTTTGATACTCTCC AATCTTTTCTGGCTTAAAATTTTCTTGTGATCTATGCTGATGAAACTTGTTGATTGTTTGGGGTTACTTATTCTTATGTT TTCCTTATGAAAGATAAATATTCTTGGTTGTAATATCTGACGATTCCCCATCTCTTCAATTCATCTAAATAGCCAGAGTT CTTTCCTCTGTTACATTTTGTATTACTTGCTTAGATGTTTGTACTCAGGTCTTTATACTCGGTTTGGAATGGAGTAATCT AACCTGGAATTTTACAGATGTTCATAGGAGATGGAGCAAAACTCGTCCGTGATGCTTTTCAGCTGGCAAAAGAGAAGTCT CCTTGCATTATATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTTGATAGGTATGAGACGGCAGGACTTCAGAA CTACATTTGCATTTTCCTTTCCTTTTTTTCTTGGGGTTCTGTTTTTTCGAGTGGGGTGGTTTTTCTTTGTTTTGAATAGT AGTTCAGCAACCTAATGATGTACCGGGTGGCTGATTGCAGTGAAGTAAGTGGAGACAGGGAGGTACAACGTACTATGTTG GAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGGATTAAGGTGTGTCTTCTACTCTTCTCATGCGTGTCTCT CTGATTAATGTGTACAATAAGCTCCAAAGATGTTTTGTTTTCTCTGGGTTAAACATATTAGATTATATCTTCTGAAAACC CATCTTTCGGATTAGTCACTTATACTATTACTTAATTAGTGATTATTTAGGTTTAGAGCGTAGAAGCGTATTAGATTTTT GGTCAGTCAGGATTTTGGTGTTGAAATGCCATGTTCACTTATTCTTTTAAATTACAGGTGATTGCAGCAACAAACCGTGC AGATATTCTTGATCCTGCCCTTATGCGTTCTGGTAGATTGGATCGAAAAATTGAGTTCCCACACCCTACTGAAGAAGCTA GAGCCCGAATTCTGCAGGTTTGGAATCTTGGAACTTTATCTGTTAATATTTTTTTTTTGACAGAACATTTACTTACAGCT TTCTCGTTAATATTATAGATCCATTCTCGTAAGATGAATGTTAACCCAGATGTCAACTTCGAAGAATTAGCTCGGTCCAC AGATGATTTCAACGGAGCACAACTTAAAGCTGTCTGTGTTGAAGCTGGCATGTTAGCCCTTCGCCGTGATGCAACCGAGG TTTGCTTTCTTCCAGATATGCAACAACTTTAATAATTTAAAAATCATGACTATTGCACGAATTTATTGGGTTGTCATTGC TGTTTGGATCTTTCTTTCTTTTGTTTTCTGTTGACTTGCTTAATGCCATGGCTTTGGATCAAGCTAGAATTTATGATATG AAATGTCTTTGCTAATGTGGAAATAATCATTAAATCTGTTTTTTGCCCTATGACAGGTGAACCATGAGGACTTCAATGAG GGTATCATTCAGGTCCAAGCAAAGAAGAAAGCAAGCTTGAACTATTATGCATAAGCACACTACAAGCAACGATCAACCAG CATTGTTGTTTGACATTTGTTTGCAAACTTCACTCGAGTCAAATGTAACCTGCTTGGCACCATTATCTATTTCTAAGAAG CAGCTTATATACATGTTGTATCTATTTTGATTTTTGAATTCATCGTGTTGGTCATGCTGCAAGTTTATCTTCGATCATTA ATGACTCATGAATTTATTACCATTTGGTGTACAAGGGATGATCAAAAACAGGACTGAGCAAGTTAAATCTAACCTGTGAT TGCATGAAATCAAGCAGCTAAAGATTATCAATATTAAAAATAAGACAATGTTATTGAATAAGTAGGATAATTACGTTATA AAAAAGTTGGATAATATCTACCCAAAAAAAAGTAGGATAATGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0770200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAGCGCTATGCTAGAAGATACCAACATGGAAGACGATCAACTCGCGTCTATGTCCACCGACGACATCGCCAGAGC TTCTCGTCTTCTCGATAACGAGATTCGCATTCTCAAGGAAGAGTTGCAAAGAACGAATCTGGAACTGGAATCGTTCAAGG AGAAGATTAAAGAGAATCAGGAGAAGATTAAGCTTAATAAGCAGTTGCCCTATCTCGTTGGTAACATTGTTGAGATATTG GAAATGAACCCGGAAGATGAAGCTGAAGAAGATGGGGCCAACATTGACCTTGACTCCCAAAGGAAGGGAAAATGTGTTGT GCTAAAGACATCTACTCGACAGACAATCTTTCTTCCTGTTGTTGGGCTTGTCGACCCTGACACGTTAAAACCTGGGGATT TGGTTGGCGTTAACAAAGATAGTTACTTAATCTTGGATACGCTGCCTTCTGAGTATGATTCTCGAGTTAAAGCCATGGAA GTCGATGAAAAACCGACAGAGGACTACAATGACGTTGGTGGGTTAGAAAAGCAGATCCAAGAATTAGTAGAAGCCATTGT TTTGCCAATGACCCATAAGGAGCGGTTCCAGAAATTAGGAGTTCGCCCACCAAAAGGAGTGCTCTTATATGGACCTCCAG GGACTGGAAAAACATTGATGGCTCGTGCTTGTGCAGCACAAACCAATGCCACTTTTCTTAAGCTGGCTGGACCCCAGCTG GTGCAGATGTTCATAGGAGATGGAGCAAAACTCGTCCGTGATGCTTTTCAGCTGGCAAAAGAGAAGTCTCCTTGCATTAT ATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTTGATAGTGAAGTAAGTGGAGACAGGGAGGTACAACGTACTA TGTTGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGGATTAAGGTGATTGCAGCAACAAACCGTGCAGAT ATTCTTGATCCTGCCCTTATGCGTTCTGGTAGATTGGATCGAAAAATTGAGTTCCCACACCCTACTGAAGAAGCTAGAGC CCGAATTCTGCAGATCCATTCTCGTAAGATGAATGTTAACCCAGATGTCAACTTCGAAGAATTAGCTCGGTCCACAGATG ATTTCAACGGAGCACAACTTAAAGCTGTCTGTGTTGAAGCTGGCATGTTAGCCCTTCGCCGTGATGCAACCGAGGTGAAC CATGAGGACTTCAATGAGGGTATCATTCAGGTCCAAGCAAAGAAGAAAGCAAGCTTGAACTATTATGCATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0770200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASAMLEDTNMEDDQLASMSTDDIARASRLLDNEIRILKEELQRTNLELESFKEKIKENQEKIKLNKQLPYLVGNIVEIL EMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAME VDEKPTEDYNDVGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN HEDFNEGIIQVQAKKKASLNYYA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23073:SF91
1 422 422 4.0E-280 –
PANTHER
PTHR23073
1 422 422 4.0E-280 –
Coils
Coil
28 69 42 - –
Gene3D
G3DSA:2.40.50.140
35 158 124 2.0E-20 –
TIGRFAM
TIGR01242
43 410 368 1.0E-126
IPR005937
Pfam
PF16450
73 149 77 1.1E-17
IPR032501
Gene3D
G3DSA:3.40.50.300
159 340 182 1.9E-65 –
SUPERFAMILY
SSF52540
167 411 245 1.36E-66
IPR027417
CDD
cd00009
173 339 167 1.0089E-25 –
SMART
SM00382
203 342 140 2.2E-23
IPR003593
Pfam
PF00004
207 339 133 2.0E-42
IPR003959
ProSitePatterns
PS00674
310 328 19 -
IPR003960
Gene3D
G3DSA:1.10.8.60
341 411 71 7.8E-24 –
Pfam
PF17862
362 406 45 5.2E-14
IPR041569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030163
Biological process Protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0770200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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