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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0770200 |
| Transcript ID | LotjaGi1g1v0770200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit-like protein; TAIR: AT1G09100.1 26S proteasome AAA-ATPase subunit RPT5B; Swiss-Prot: sp|O04019|PS6AB_ARATH 26S protease regulatory subunit 6A homolog B; TrEMBL-Plants: tr|G7I8P7|G7I8P7_MEDTR 26S proteasome regulatory particle triple-A ATPase protein; Found in the gene: LotjaGi1g1v0770200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134259124..134262365) extracted from Lotus japonicus Gifu genome v1.2.
TGTGTGGATCAAAAGCAGTTGAATCGCAGAGCAATTAGGTTACAGTGAGTGATGGCGAGCGCTATGCTAGAAGATACCAA CATGGAAGACGATCAACTCGCGTCTATGTCCACCGACGACATCGCCAGAGCTTCTCGTCTTCTCGATAACGAGATTCGCA TTCTCAAGGTCGAGATTTCTAATTCTTGTTAGATTCAATGCGTAGCGTCTTTGTTTTCATGTTTTCTTGTTGTTGAATTG TTTGTGAATTTGTGTTTGAAGGAAGAGTTGCAAAGAACGAATCTGGAACTGGAATCGTTCAAGGAGAAGATTAAAGAGAA TCAGGAGAAGATTAAGCTTAATAAGCAGTTGCCCTATCTCGTTGGTAACATTGTTGAGGTTAATTTCCCATCGCCCACTC GTTCTTCCTTCTCTTCTATGTTATTGATGTTCTTTTTAGCCTAGAATTAAATTGCAGAACTATTTTGAAGTAGTGAGGTT GAACTCCATAGGAATTTAGACTCTAAATTTGACCCCTTTCCACTATAGGGTTTACTGGGGAATCTCTGGTGTTGATAAGT TGATAACTAATTGTTTACTTCAGTGTTTTTTTTTTCTTTTAAAATTTGTCATGTATCATTGTTCATTTTGTTGCATTTGC TACAATTAGCCTAGGGTTTGATTCCATATTTAAAGTTGATCTATCAAGATGAAAAGGGTAATCAGTGATTGAATATGTTG GAGATCTAACTTGGTTTTTTTCCTCCCCCTACATTTAATGTTCTTTCAAATTGTTGTGACATGGTGTTTCTGTATTTAGA TATTGGAAATGAACCCGGAAGATGAAGCTGAAGAAGATGGGGCCAACATTGACCTTGACTCCCAAAGGAAGGGAAAATGT GTTGTGCTAAAGACATCTACTCGACAGGTGACAAAGCTGATAATTTCATCTTTTTTACAGCTATTTAATGTTTCCATATT TCAAATTTAGTACTGTTTTTGCTTTTCTTTTGCGTCCCCAGAAAATCATAATGGACTTGGAGTTAGTTGACAAATGAATT CCCTTAATATAATTGATTTTGATAATGAAGTATGTTTGCTTTTGAATACAGACAATCTTTCTTCCTGTTGTTGGGCTTGT CGACCCTGACACGTTAAAACCTGGGGATTTGGTTGGCGTTAACAAAGATAGTTACTTAATCTTGGATACGCTGCCTTCTG AGTATGATTCTCGAGTTAAAGCCATGGAAGTCGATGAAAAACCGACAGAGGACTACAATGACGTTGGTGGGTTAGAAAAG CAGGTATGATTTAATTACTGGGAATATGTTAAAACTTAAAACACCTTTAATTTTTTCTTTTTGTTATTTATGGTTGGGTA ACAGGGTTTCTGTGATAATAACTTGATATTTGCCAACAGATCCAAGAATTAGTAGAAGCCATTGTTTTGCCAATGACCCA TAAGGAGCGGTTCCAGAAATTAGGAGTTCGCCCACCAAAAGGAGTGCTCTTATATGGACCTCCAGGGACTGGAAAAACAT TGATGGCTCGTGCTTGTGCAGCACAAACCAATGCCACTTTTCTTAAGCTGGCTGGACCCCAGCTGGTGCAGGTATGGCCC TTCCCAATATTGTTTTCCTCTTAGCTCATCGTGGCTAATGATTTCATTGTTGCTTATTTGTTAACTTTTTCTCCTCTTCG TTATATAACTCAGTAGTTAGTATTTTCTGTTTTGCTGGATTTCACGGGCATGCATTTTGATACTCTCCAATCTTTTCTGG CTTAAAATTTTCTTGTGATCTATGCTGATGAAACTTGTTGATTGTTTGGGGTTACTTATTCTTATGTTTTCCTTATGAAA GATAAATATTCTTGGTTGTAATATCTGACGATTCCCCATCTCTTCAATTCATCTAAATAGCCAGAGTTCTTTCCTCTGTT ACATTTTGTATTACTTGCTTAGATGTTTGTACTCAGGTCTTTATACTCGGTTTGGAATGGAGTAATCTAACCTGGAATTT TACAGATGTTCATAGGAGATGGAGCAAAACTCGTCCGTGATGCTTTTCAGCTGGCAAAAGAGAAGTCTCCTTGCATTATA TTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTTGATAGGTATGAGACGGCAGGACTTCAGAACTACATTTGCAT TTTCCTTTCCTTTTTTTCTTGGGGTTCTGTTTTTTCGAGTGGGGTGGTTTTTCTTTGTTTTGAATAGTAGTTCAGCAACC TAATGATGTACCGGGTGGCTGATTGCAGTGAAGTAAGTGGAGACAGGGAGGTACAACGTACTATGTTGGAATTGCTCAAT CAGCTTGATGGTTTTAGTAGTGATGACCGGATTAAGGTGTGTCTTCTACTCTTCTCATGCGTGTCTCTCTGATTAATGTG TACAATAAGCTCCAAAGATGTTTTGTTTTCTCTGGGTTAAACATATTAGATTATATCTTCTGAAAACCCATCTTTCGGAT TAGTCACTTATACTATTACTTAATTAGTGATTATTTAGGTTTAGAGCGTAGAAGCGTATTAGATTTTTGGTCAGTCAGGA TTTTGGTGTTGAAATGCCATGTTCACTTATTCTTTTAAATTACAGGTGATTGCAGCAACAAACCGTGCAGATATTCTTGA TCCTGCCCTTATGCGTTCTGGTAGATTGGATCGAAAAATTGAGTTCCCACACCCTACTGAAGAAGCTAGAGCCCGAATTC TGCAGGTTTGGAATCTTGGAACTTTATCTGTTAATATTTTTTTTTTGACAGAACATTTACTTACAGCTTTCTCGTTAATA TTATAGATCCATTCTCGTAAGATGAATGTTAACCCAGATGTCAACTTCGAAGAATTAGCTCGGTCCACAGATGATTTCAA CGGAGCACAACTTAAAGCTGTCTGTGTTGAAGCTGGCATGTTAGCCCTTCGCCGTGATGCAACCGAGGTTTGCTTTCTTC CAGATATGCAACAACTTTAATAATTTAAAAATCATGACTATTGCACGAATTTATTGGGTTGTCATTGCTGTTTGGATCTT TCTTTCTTTTGTTTTCTGTTGACTTGCTTAATGCCATGGCTTTGGATCAAGCTAGAATTTATGATATGAAATGTCTTTGC TAATGTGGAAATAATCATTAAATCTGTTTTTTGCCCTATGACAGGTGAACCATGAGGACTTCAATGAGGGTATCATTCAG GTCCAAGCAAAGAAGAAAGCAAGCTTGAACTATTATGCATAA
CDS sequence (LotjaGi1g1v0770200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGCGCTATGCTAGAAGATACCAACATGGAAGACGATCAACTCGCGTCTATGTCCACCGACGACATCGCCAGAGC TTCTCGTCTTCTCGATAACGAGATTCGCATTCTCAAGGAAGAGTTGCAAAGAACGAATCTGGAACTGGAATCGTTCAAGG AGAAGATTAAAGAGAATCAGGAGAAGATTAAGCTTAATAAGCAGTTGCCCTATCTCGTTGGTAACATTGTTGAGATATTG GAAATGAACCCGGAAGATGAAGCTGAAGAAGATGGGGCCAACATTGACCTTGACTCCCAAAGGAAGGGAAAATGTGTTGT GCTAAAGACATCTACTCGACAGACAATCTTTCTTCCTGTTGTTGGGCTTGTCGACCCTGACACGTTAAAACCTGGGGATT TGGTTGGCGTTAACAAAGATAGTTACTTAATCTTGGATACGCTGCCTTCTGAGTATGATTCTCGAGTTAAAGCCATGGAA GTCGATGAAAAACCGACAGAGGACTACAATGACGTTGGTGGGTTAGAAAAGCAGATCCAAGAATTAGTAGAAGCCATTGT TTTGCCAATGACCCATAAGGAGCGGTTCCAGAAATTAGGAGTTCGCCCACCAAAAGGAGTGCTCTTATATGGACCTCCAG GGACTGGAAAAACATTGATGGCTCGTGCTTGTGCAGCACAAACCAATGCCACTTTTCTTAAGCTGGCTGGACCCCAGCTG GTGCAGATGTTCATAGGAGATGGAGCAAAACTCGTCCGTGATGCTTTTCAGCTGGCAAAAGAGAAGTCTCCTTGCATTAT ATTTATAGATGAAATTGATGCAATTGGAACAAAGCGTTTTGATAGTGAAGTAAGTGGAGACAGGGAGGTACAACGTACTA TGTTGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGGATTAAGGTGATTGCAGCAACAAACCGTGCAGAT ATTCTTGATCCTGCCCTTATGCGTTCTGGTAGATTGGATCGAAAAATTGAGTTCCCACACCCTACTGAAGAAGCTAGAGC CCGAATTCTGCAGATCCATTCTCGTAAGATGAATGTTAACCCAGATGTCAACTTCGAAGAATTAGCTCGGTCCACAGATG ATTTCAACGGAGCACAACTTAAAGCTGTCTGTGTTGAAGCTGGCATGTTAGCCCTTCGCCGTGATGCAACCGAGGTGAAC CATGAGGACTTCAATGAGGGTATCATTCAGGTCCAAGCAAAGAAGAAAGCAAGCTTGAACTATTATGCATAA
Protein sequence (LotjaGi1g1v0770200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAMLEDTNMEDDQLASMSTDDIARASRLLDNEIRILKEELQRTNLELESFKEKIKENQEKIKLNKQLPYLVGNIVEIL EMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAME VDEKPTEDYNDVGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRAD ILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVN HEDFNEGIIQVQAKKKASLNYYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 422 | 422 | 4.0E-280 | – | |
| PANTHER | 1 | 422 | 422 | 4.0E-280 | – | |
| Coils | 28 | 69 | 42 | - | – | |
| Gene3D | 35 | 158 | 124 | 2.0E-20 | – | |
| TIGRFAM | 43 | 410 | 368 | 1.0E-126 | ||
| Pfam | 73 | 149 | 77 | 1.1E-17 | ||
| Gene3D | 159 | 340 | 182 | 1.9E-65 | – | |
| SUPERFAMILY | 167 | 411 | 245 | 1.36E-66 | ||
| CDD | 173 | 339 | 167 | 1.0089E-25 | – | |
| SMART | 203 | 342 | 140 | 2.2E-23 | ||
| Pfam | 207 | 339 | 133 | 2.0E-42 | ||
| ProSitePatterns | 310 | 328 | 19 | - | ||
| Gene3D | 341 | 411 | 71 | 7.8E-24 | – | |
| Pfam | 362 | 406 | 45 | 5.2E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi1g1v0770200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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