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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0776300 |
Transcript ID | LotjaGi1g1v0776300.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134858711..134860875) extracted from Lotus japonicus Gifu genome v1.2.
GTTCGAAAATATACTCCGAAACGAAAAGTTCAGTTTCCCGCGAATCTCAGTGTGAACGCCACGTCATCGATCCGCGTCTC ACGCTCTCGACCAATCAGAACCGAGGCTCGAGTTCTATATAATCCATTTCCACTCACAAACCCTTTTCATTCTTCACTCG CTCGCTGTCTTCTCACCTCTCTCACAGCTTCTCCGCGCTCTGATACTGGATCGCAATTTCTAGGGTTAGGGTTTCCCAAT TTCTTCCTCGATCGTAGAGAATGAGTTCCACCGGCGGCAACAACACCAAGGGCGGCAGAGGCAAGCCCAAGGCCGCCAAA TCGGTTTCCAGGTCTCAGAAGGCTGGTCTCCAATTCCCCGTTGGAAGAATCGCGAGGTTCCTCAAGGCTGGAAAGTATGC TGAGCGTGTTGGTGCTGGTGCTCCTGTGTATCTCTCTGCTGTGCTTGAGTATCTCGCCGCTGAGGTTTGTTTTGATCCAT TTCTGATGAATTTCGTTTTTCTTTTCTGTTTTACGATTTGGTTCAATTTAGGGTTCTAAGTGTGAATTCAATCGGATTCA TGTTGATTTCAGTGTTTGATTGTTCAATTTGTTGATGCTTACTGTGTTGGTTTAGGTTTTGGAATTGGCTGGGAACGCTG CTAGGGACAACAAGAAGAATCGTATTGTTCCAAGGCACATTCAACTTGCTGTGAGGAACGATGAGGAGTTGAGCAAGCTG TTGGGATCTGTCACCATTGCTAATGGAGGTGTGCTGCCGAATATTCACCAGACTCTGCTTCCTAAGAAGGCTGGAAAGGG GAAAGGCGAAATTGGATCTGCTTCTCAGGAATTTTAGGGGTTTTGATGTCTCCTCTGTTGATTAGACCATAGTTTTATTT TGCTGCAGTTGTAATATACATCGATGTTTGATTTCTATATTGCTGCCCAGAGAGATTTGTTGTTTATCAGTGGGCAGAAT TGGATGGCGTAGAACCCTCTTTATAATGTTGGATGAATGATAAATGCTTTTGCCTGAATGTCTTGATTTCTAGTTTGTAG TTCTTATTTTTCTGGTGTGGCCACACAAGCATATAGCGTTTTTCACCATAAGCATATGCTTGTCGATTCTGTCTCTGTTG GTTTGGTTATTTTTGTTGTAGCACTTTAGGGTTTAGGCTACATGGAGCTATGACATAACTCTGAGGATTTGTTGACAGAT TTTTGTCACTCTTATCTTTCAATTTGGAGATATGCCATTGAGGTTTGTTGACAGATTTTGTTTAATGGCTTGATTGTGAT GGTCTCTTTGTTGTTGTACTTTCTATCGATTGTCCATGTTCCATGCATGTAGTGTGTACATAAGTCAGCTTTATCTTGGC CATTTCAGAATTTTATAGCAGCAATGTTTACAATGATCAAGATTGTGCTTAACTCATCTTGGTGAGAATGAGAGTTTGTT TGTGATAATGGATTTGGGGTATGCTTTTTTTTACTGGTGTTGTGCTTGTTTTGAATGGAGGACCTGTTAGTGGGTGAGAC TCTCCAAACCACTTAGGAAATTGGCTATTTGGGAATGCATTTAGCATTGATCTGGTGAGCTCAACTTGCAGAAGCAAAAG TGTAGGTCAATACTCCAGAGTAATCTAAAGGGAGCAATGTATTCATTTCCGGTGGAGTAAACGTAGACTGAGTGTACACC TTAATCCTGAGCCCTCCTTGAAATGTGCTATTGCTTAGAACTACGGTCTAACTATTACAAGGCTTTAGTTTTGGATTGTT AGATTAGTAATGGACAGTGAAGATAACAAGATGCTTCTTGCTTCACCAGAATAACTGCGGGTCTGAATCACTTATTGTTA CCGTCTTATCTTTTGTCCCCAAACTTGGCCATGAAATCCAAAAAAAAATTTGAGCAATTAAAATTTATCATATATAAGTT TGTGAGTCTCACACATGTTATTTTCAATTGACATGGATAAATTTCATTGTTGAAATAGGAAATTGAGATTCCATTTTATT TTCACATTGGCTTTAAATGGCATCCTTTCTGGGACCATATTGTTACTAAGATAAGTATATATTACAAATTACAAAATAAT GCTTATTTTTTACTTGAATCTCTTGTATAGCCGCTGTCTCTTAATTTTTCAACCTACCAAAAACCAATTACATAACTATA TTTAG
CDS sequence (LotjaGi1g1v0776300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCCACCGGCGGCAACAACACCAAGGGCGGCAGAGGCAAGCCCAAGGCCGCCAAATCGGTTTCCAGGTCTCAGAA GGCTGGTCTCCAATTCCCCGTTGGAAGAATCGCGAGGTTCCTCAAGGCTGGAAAGTATGCTGAGCGTGTTGGTGCTGGTG CTCCTGTGTATCTCTCTGCTGTGCTTGAGTATCTCGCCGCTGAGGTTTTGGAATTGGCTGGGAACGCTGCTAGGGACAAC AAGAAGAATCGTATTGTTCCAAGGCACATTCAACTTGCTGTGAGGAACGATGAGGAGTTGAGCAAGCTGTTGGGATCTGT CACCATTGCTAATGGAGGTGTGCTGCCGAATATTCACCAGACTCTGCTTCCTAAGAAGGCTGGAAAGGGGAAAGTTGTAA TATACATCGATGTTTGA
Protein sequence (LotjaGi1g1v0776300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDN KKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGKVVIYIDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 27 | 27 | - | – | |
PANTHER | 8 | 132 | 125 | 9.3E-79 | – | |
PANTHER | 8 | 132 | 125 | 9.3E-79 | – | |
Gene3D | 8 | 133 | 126 | 1.3E-61 | ||
SMART | 9 | 129 | 121 | 2.3E-77 | ||
CDD | 14 | 126 | 113 | 5.64243E-67 | ||
Pfam | 17 | 95 | 79 | 1.2E-14 | ||
PRINTS | 20 | 42 | 23 | 3.4E-52 | ||
SUPERFAMILY | 23 | 126 | 104 | 3.29E-43 | ||
ProSitePatterns | 28 | 34 | 7 | - | ||
PRINTS | 49 | 64 | 16 | 3.4E-52 | ||
PRINTS | 64 | 77 | 14 | 3.4E-52 | ||
PRINTS | 78 | 92 | 15 | 3.4E-52 | ||
Pfam | 98 | 131 | 34 | 1.5E-18 | ||
PRINTS | 106 | 124 | 19 | 3.4E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi1g1v0776300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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