Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0776300.3

Overview

Field Value
Gene ID LotjaGi1g1v0776300
Transcript ID LotjaGi1g1v0776300.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:134858971..134859547) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTTCCACCGGCGGCAACAACACCAAGGGCGGCAGAGGCAAGCCCAAGGCCGCCAAATCGGTTTCCAGGTCTCAGAA GGCTGGTCTCCAATTCCCCGTTGGAAGAATCGCGAGGTTCCTCAAGGCTGGAAAGTATGCTGAGCGTGTTGGTGCTGGTG CTCCTGTGTATCTCTCTGCTGTGCTTGAGTATCTCGCCGCTGAGGTTTGTTTTGATCCATTTCTGATGAATTTCGTTTTT CTTTTCTGTTTTACGATTTGGTTCAATTTAGGGTTCTAAGTGTGAATTCAATCGGATTCATGTTGATTTCAGTGTTTGAT TGTTCAATTTGTTGATGCTTACTGTGTTGGTTTAGGTTTTGGAATTGGCTGGGAACGCTGCTAGGGACAACAAGAAGAAT CGTATTGTTCCAAGGCACATTCAACTTGCTGTGAGGAACGATGAGGAGTTGAGCAAGCTGTTGGGATCTGTCACCATTGC TAATGGAGGTGTGCTGCCGAATATTCACCAGACTCTGCTTCCTAAGAAGGCTGGAAAGGGGAAAGGCGAAATTGGATCTG CTTCTCAGGAATTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0776300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTTCCACCGGCGGCAACAACACCAAGGGCGGCAGAGGCAAGCCCAAGGCCGCCAAATCGGTTTCCAGGTCTCAGAA GGCTGGTCTCCAATTCCCCGTTGGAAGAATCGCGAGGTTCCTCAAGGCTGGAAAGTATGCTGAGCGTGTTGGTGCTGGTG CTCCTGTGTATCTCTCTGCTGTGCTTGAGTATCTCGCCGCTGAGGTTTTGGAATTGGCTGGGAACGCTGCTAGGGACAAC AAGAAGAATCGTATTGTTCCAAGGCACATTCAACTTGCTGTGAGGAACGATGAGGAGTTGAGCAAGCTGTTGGGATCTGT CACCATTGCTAATGGAGGTGTGCTGCCGAATATTCACCAGACTCTGCTTCCTAAGAAGGCTGGAAAGGGGAAAGGCGAAA TTGGATCTGCTTCTCAGGAATTTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0776300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDN KKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGKGEIGSASQEF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 27 27 - –
PANTHER
PTHR23430
8 140 133 2.0E-84 –
PANTHER
PTHR23430:SF248
8 140 133 2.0E-84 –
Gene3D
G3DSA:1.10.20.10
8 134 127 1.3E-61
IPR009072
SMART
SM00414
9 129 121 2.3E-77
IPR002119
CDD
cd00074
14 126 113 7.57425E-67
IPR002119
Pfam
PF00125
17 95 79 1.3E-14
IPR007125
PRINTS
PR00620
20 42 23 3.6E-52
IPR002119
SUPERFAMILY
SSF47113
23 126 104 3.59E-43
IPR009072
ProSitePatterns
PS00046
28 34 7 -
IPR032458
PRINTS
PR00620
49 64 16 3.6E-52
IPR002119
PRINTS
PR00620
64 77 14 3.6E-52
IPR002119
PRINTS
PR00620
78 92 15 3.6E-52
IPR002119
Pfam
PF16211
98 131 34 1.1E-18
IPR032454
PRINTS
PR00620
106 124 19 3.6E-52
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0776300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…