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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0788500 |
| Transcript ID | LotjaGi1g1v0788500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136107264..136112178) extracted from Lotus japonicus Gifu genome v1.2.
TTGAATTGTAAGGCAACAAGCTAGAGCTAAAAAAAATTTCAAAAGCAGAACACTGTAGGCAGAGACTACTGTACAACAAG AGGCAGTGACAGAGAAATGGCAAACACGAATAGCTAGAGATGTGAATTCGCCACGGAGAATCTCCACCGTCCATCATGTT GACCAAACTAGACTATAGTACTTGACTTCTTCTTCTTCTTATGGTGATCGATGATCATGATTTTACCTTTCTAACTCATT GCGGTTGGTGGTGGGACCCAGGCACCGGATACTACCGGGGGCCACCAAGCAGCACAAGAATCCCGAACCCGCTAACCCCT TCTTTCCCGCTCCGGCCAATTCCCTCACCCCGTTCCACTCCTTCAACGCCGTCGTCGCCGCCGCCGTCGATCTCGGCGAC GATGAAGACGACGTCGTCGTCGAAGACTCCGCCTCATCCAAATCCACCGACTCCGTGCAAGAATTCTCACAAGATTCGCT CGAAACCTCCTCGTTCTCCTCCGCCTTCGACTTCGACTTCATCTTCCTCCGCGGCCGGCTCTGCATCTTCTCTCCCATCA GGTCGCGGTAACCAATCGCCGATATCTTCTCCAGCGCCGGGAAACCTGACGAGCCGTCTATCACCATCGCGCCGATGTTC ATCACGCCGTCAAACCTCCCCGACGGCCGCTGTATCTGGACGGCGGTGAAGGTGAAGCGCGGCGTGCCGGGAGACACAAT GTTGCTGATCAGGAACCTCACGGTGCCGACGAGGTGGTCGCGGAAGGTCCCGACGGCGTAGATGGCGACTGAAATTCCAG AGGTCTCGCTAGCAACATACTCCGGCGTGACGCGGAAGAGGAACTTGTCGTTCCAGGTAGGGTTCTGGCCGCCGATTTTG TCGACTCGTGTTCGGAGCTTCATGGAAGGGTCGATCCACGTGACGGCGTAGGTTTGTAGCCTCCGGCGGAGAGAGGAAGG GGGCTTGAGGCCCTGTGCCGAGATCAAGTTGATCTCCAACACTAGCTGCTGCTGCTGCGGCGGCGTCTTCTTCGCCGGCG ACGGCATTGTTTCTCTCTCTAACTCTCTCTCTAGAATGCTAGTGCACCATCTCTACTCTTTCTTGAATCTCCGGCGAGAT CAACGGACAAGATGGTTCAAGAAAGAATCAACGGTGAGGTGAGGTGTCAAGTGAGTTGAGAGAGAGAGAATATGGTGTTT TCAGAGAGTGGGTCCTACGTGTGTATTTAAGGGGTGTATTTATGCAAATTTGAATTAGTTAGAGGGTTAGAATGTAAATG AAGATGCTAGCTGTAAATAACTGAACTGGGTTTAGGGTGTGAGGTCCTAAGTGAATTGTTAATAACGGCTATAATGGAAT CTTCACAACAAACCCCACTTGACAACTATTATACAGGTCACACTAATAAGTAGTTAAATATTAATTAATCTTTATTTTTT AATTCTTAATGTGTGGGCTTTAAAATTGGGCTTGAGCCCAAAGGCCCACCATCATGTTTTTGTTTTCTCTTTTCTCTCTT CGTGGTTGTGATTACTGTAACAGTGCTAGGGTTTTGCAGAATCAAGGTCTGGCAACAATGGGAAAAGCGAAGAAGGGACC AAAATTTGCGGTAAGGAAGAAGCTTGTTTCTTCCAAAGCAATTAAAAAGTGAGTTTGTTTTTGTTGTGTTCTTTGTTAAT TGTTAGTTTCTTTGTTATGTGCTCTGTTTTCACTGCTGGAATTTGTGCGAATTCAGCTATAAACAAGAGGTTTTGAACCC AGAAAAGAAGAACCATGTAAAGGAAAACTTGCCCAGAAACGTGTAAGCGTTTGTTATCACCTTTTACTTTCACTAGCACT ATTTTTATTTTATTAATGTATGGTTTGAATTTGGCTTGTTTAGTCCACATTATTCTTCGGCTCTTTTCTTCCAATACAAT ACTGCGTTGGGACCCCCTTATCGTGTTCTGGTGGATACCAACTTCATCAATTTCTCTATCCAGAATAAGGTAAGTTATAG TATATTTTTCTTCTTCAAAACTTTGCACTTGTTGTGAACTTGTGATACTTGTTTCCCTCTGTTAACTGAAGAATTGAATG AACTATTGTATGATTATATCTGGTTCTGCATGTGTAGCAGCTTCTCATGGAATAGTATGTTTAAAATTATAGTACATGGT GTTGCTGATGATGTTTGTGAGTTGTGACTGTATTTTGATGATTTCCATCGATGGTGGCTCACACAATTCATTGGCTTTGT TTATGTAGTTGGATCTCGAGAAGGGAATGATGGACTGCTTATATGCAAAATGTGAGTTTAAATAGATGATTTAATGTCTC AGTTTATGAATTTCATGTTTAATTTTAGTTGAGTGTTGGGATTTCTATTAGGTTTCAGATCTTATGTTGTGATAACCTTT ATAAGATTAAAAATTTGTTATTTGAATAAAACATCCCATACTTAACTCTTACTCTTATTCTATTGATACTTTGGATTTTC AGGCACACCTTGTATCACAGACTGTGTAATGGCAGAACTTGAGAAGTTAGGACAAAAGTATCGTGTAGCTTTAAGGTAGA AATTATTTCATGTTCCTAATCCTTGATTTTCATTGCTTTATATTCTCATTCATTCGGGATATGCATGTGAAATTCAAAAT TATTCATGAATGCTAGCTAGGCTGAACATTTCTTTTGGCGAAGTTTCTTCTTTACTATGTGCATTATCAATTGAGTTTAT GATTGGTATATTTCTATGCTAAAATCCCTAATTTTTTAAAAGATAACATGAATTAGAAAACCAACTTTTAATTTCATCCG TTTTCATATTCTATTAAAAAAATAGACATAGGAGGAGTTCACAAAGGGTAAAACTTTAGACAGAGTGATAGAGTACAAAT CAATCTTCTTCGATGGTTTTTTTTGTTTAGACTTGAGCAAAGAAATAGTATTGTTCCAGTCTCTTATTGTGGATAATTAA TTGCTTTTATACATGACAGGATTGCAAAAGATCCTCGATTTGAGAGAATACTATGTACACACAAAGGGACCTATGCTGAT GACTGCCTTGTTGAGAGAGTTACTCAGGTGTGACTTACTTTTATGCATCTGTGACATGTTCAGAAACATGTGGGATCATC TTGATTATTAAGATTCATTTGTCTTTTTCTGGCTTTAGAATAGTTTATCTTTTTTGTTTTGTTCAACAATGAAGGCAAGA TCTTTCTAATATATTAGTACATTTTTTTTGGTTTCTTATCAATTGGTCGTATTAGATATTTATTTCCTATTTTACTGGAC TTAGGTATTTCTTCATATGGTTTTGTAGATCCGTAAGCTCATTTCTATTGATATTTTTCAATTGAAAAATGAATATATAG TATATCAGGATACTTACATTTGGGAGTTTTCCTCTCCCTTATGTCCCTTGTAATTTTTTACTTTGAAAAATTGCGACGAA GTTTTGTTTTCGTTATTTTTTCTCAATTTGAATTCATAATTAAGCTAATGAATATGATTGAGTGTTATTTGTTTCATTCT TGGTGTTTATGAGCCTTATTTTCCAAATTCTTGGCTTTTGCAGTATATTCATTTAAGTAAAGTGAACACTTCTATTAGAA ATAGTTTCAAATAAAAATAGCAGGAAACTCATCTGCTGCTTATTTACTCTAAATATTTTCTTGAGTGCAGCATAAATGCT ACATTGTTGCAACATGTGATCGGGACTTGAAGAGAAGGATCCGGAAGGTAAAGTCACTAATCTTTTCTCCATCTTTGATT GTCTTGCTATTGGACCTGGATGCATGAACCCTGAGCACCCCTGAGCTGGATTTCTGTATTGCAGATTCCTGGTGTGCCCA TAATGTACATCACCAAACACAAGTACTCAATCGAACGGTTGCCTGAAGCAACAATTGGTGGAGGTAGATACTCTGTATTG TAAAGTAATATTATACAGTAATGTACATATCTGTTCGCTGTGAAGGTTGGCTACCAAGAAAGCGTAGGCTATAGCTAACG ACTAACTAAGAAATTGAGCTTAGTTAATTAGTCTAGGGAATCCTTTGGTAAACAAGATAACCAAAGTTTTATTTAGTTTA TCTCTTCAGCACACATGAGACAAACTAAATTTGAGCATGACATTGCCACTGACATACTGCTTGAATGGTATGAAGAGCTT TTAGGTGCTTTTCAATAGCCCTGGTCAGTATGATTCCTATAGTAATAGAAGAAATATACAGAACCTAAGTCGTCTAGTTA TAATGAAGCAAAGTTTCTGCTTATTTGAATGTAGTCAATTTTGTAATAAAGCCACTGTTTGCTTCTTGCACCTTAACTTA GTGAAATTCATACCCAAATAATATGCCATTTTGTTGTTGTTAACAATCAAGTGCCTCATCCAGTCTTAATGAATGAAAAT GAACCATTAATCCTATTAGCTATAAGCAGGATTAGACTATTCTATGCTGCTCTAATTATTTCCTTACATAGTAGTATTTT ACTCTTTTTTGGCACTCAACTGATGTACCTATGGTTTTTAATGCAGCACCAAGAATTTGATACAATGACACAGCAACTGT GTATAACTCCATAATGTTGACACTATATCCCGCTACTTGTTTGGTCCGTTTGTTTGCTGTACTAAAATCTGAGGGAAGCT CTGATGGAAGCTCAACGATGAACAGGAAGCAACTCTTCCATTTTTGATACATGAAATTTCCCCGGTGTTACTTGGTCGAT TTGGATGTTGTAAAAGTTTCTTTCCCTCTGTTGCCTCACTGATGTACCAAGTTGAACCTTGGAGAGTAGTACCTAAACTA CAATGACATTTTCATAGTTCTAGTCATATAGATATCTTGAAATGCACTTCTTTTTTTATTTGGAACTAGTAAGGTACCCG TGCCGTTGCACGGGTCTGCACGACGATCACTGTGA
CDS sequence (LotjaGi1g1v0788500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACTGAAATTCCAGAGGTCTCGCTAGCAACATACTCCGGCGTGACGCGGAAGAGGAACTTGTCGTTCCAGAATCA AGGTCTGGCAACAATGGGAAAAGCGAAGAAGGGACCAAAATTTGCGGTAAGGAAGAAGCTTGTTTCTTCCAAAGCAATTA AAAACTATAAACAAGAGGTTTTGAACCCAGAAAAGAAGAACCATGTAAAGGAAAACTTGCCCAGAAACGTTCCACATTAT TCTTCGGCTCTTTTCTTCCAATACAATACTGCGTTGGGACCCCCTTATCGTGTTCTGGTGGATACCAACTTCATCAATTT CTCTATCCAGAATAAGTTGGATCTCGAGAAGGGAATGATGGACTGCTTATATGCAAAATGCACACCTTGTATCACAGACT GTGTAATGGCAGAACTTGAGAAGTTAGGACAAAAGTATCGTGTAGCTTTAAGGATTGCAAAAGATCCTCGATTTGAGAGA ATACTATGTACACACAAAGGGACCTATGCTGATGACTGCCTTGTTGAGAGAGTTACTCAGCATAAATGCTACATTGTTGC AACATGTGATCGGGACTTGAAGAGAAGGATCCGGAAGATTCCTGGTGTGCCCATAATGTACATCACCAAACACAAGTACT CAATCGAACGGTTGCCTGAAGCAACAATTGGTGGAGCACCAAGAATTTGA
Protein sequence (LotjaGi1g1v0788500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEIPEVSLATYSGVTRKRNLSFQNQGLATMGKAKKGPKFAVRKKLVSSKAIKNYKQEVLNPEKKNHVKENLPRNVPHY SSALFFQYNTALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFER ILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKHKYSIERLPEATIGGAPRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 32 | 228 | 197 | 1.3E-111 | – | |
| PANTHER | 32 | 228 | 197 | 1.3E-111 | – | |
| Gene3D | 80 | 224 | 145 | 7.1E-50 | – | |
| CDD | 86 | 216 | 131 | 1.08876E-105 | – | |
| SUPERFAMILY | 94 | 218 | 125 | 2.51E-33 | ||
| SMART | 96 | 195 | 100 | 1.9E-14 | ||
| Pfam | 121 | 217 | 97 | 1.1E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
Expression pattern of LotjaGi1g1v0788500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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