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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0796800 |
| Transcript ID | LotjaGi1g1v0796800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G01400.1 oligomeric golgi complex subunit-like protein; Swiss-Prot: sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400, mitochondrial; TrEMBL-Plants: tr|A0A0L9TFC5|A0A0L9TFC5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0796800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136734769..136736622) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAATAAATCCCACAGTAAATAAAAATAGATGCTGGGCTTAGGCCCTCTCTATTAGCAAAAAATAAAATAAAACAAAT AGATGCATATAATTGTTTTAAACAAATAAATCGAAGCCTCGACTCGACTATGTGTCTGTGATTGAGTTATCCCTGTCCTC AGATCCCAGCTCGATGCGCAGAGCACCGTTACCGTTACCATTACTTGGCTCCTCCAAAACTCTATTCTCCAATGGCATCT TGCGTTCATCAATATCAATACCCCATCATTTCCAAAACCAACAACGTTACCATTCAAACTCCCCAATTGGGTCTCCAACA AGAGTTCAGAAGCTCATAGCTTCTCAATCAGACCCTCTTCTCGCCAAAGAAATCTTCGAATATGCTTCTCGCCAACCCAA CTTCCGCCACACTCACTCCACCTATCTCATCCTCATCCTCAAATTCGGTCGCTCCAAACACTTCTCACTCCTCGATCATC TCCTTCTTCGCCTCAAATCTGATTCCCTACCCCTCACTCCCACCGTCTTCACCTACCTCATCAAAATCTATGCCGAAGCC GATTTGCCCCACAAAGCCCTCAAAACCTTCTACACCATGTTGCAGTTCCAGTGCAAGCCTCTCCCCACACACCTCAACCG CATTCTTCAGATTCTCGTTGCCCACCGGAATTACCTTCGTCCCGCGTTTGATCTCTTCAAGGATGCCCACAAGCACGGCG TGTTCCCCAACACCAAATCCTACAATATTCTCATGCGGGCATTCTGTCTCAATGGTGATATCAGCATTGCCTACACACTG TTCAACAAAATGCTTAAGAGAGATGTTGTTCCTGACATTGACTCATACAGGATTTTGATGCAAGCATTGTGTAGGAAGAG TCAGGTAAATGGAGCTGTTGATCTTTTAGAGGACATGCTGAACAAAGGGTTTGTTCCTGATTCCTTGACGTATACCACTT TGTTGAATAGTTTGTGTAGGAAGAAGAAGCTCAGGGAAGCTTACAAGCTTCTTTGTAGGATGAAGGTCAAAGGCTGCAAT CCTGATATTGTTCATTATAATACAGTTATCTCAGGGTTCTGTAGGGAGGGGCGTGCTCACGATGCTTGCAAAGTTATTCA TGACATGCAGGATAATGGGTGTTTGCCTAATTTGGTGTCTTACCGCTCTCTGGTAAGCGGTTTATGTGACACTGGAATGC TTGATGAGGCATATAAATACATGGAGGAAATGCTGTCCAAAGGGTTTTCTCCACACTTTGCTGTCATCCATGCCTTAGTG AAGGGGTTCTGCAATGTTGGTAGGACTGATGAAGCTTGTGGAGTTCTCACCAAATCACTTGAGCATGGGGAGGCTCCTCA TTCAGAGACTTGGATGATCATAATACCTTTAATATGTGAAGGGGAAGATGATGATGGTGCGAAAATCAGTGATGGTTTGG AGAAAGCTCTTAAGATTGAAATTGAAGGTTATACTAGAATTGTTGATGCTGGCATTGGTTTGGAAAACTACTTAATTAGG AAGATACGAGCCAAGACAAGAGCATCTTAAACATCTGGACTTATTACTTTTTCAAATTTTGTACCTTACATATAGCTATT TGTCTAAGAATCTTACACAGGTTCCTCTAGCTAGTAATATGGTTTCCAATGACAGTGTTGTATGTCAATTATAATTATGC AGCTTCTCTGTCAATGACAGTGTCCGATAATTATGCAGGGACTGTTATTACTCAAACTAACAAAGTAACAATGTTCAAGC ACCATTAAGCTAAGATATTGATCTCAATAATTCATTTTTGTTCACCGAGTTGTCATTGTCATTTAGCCCTTTTGAAATGG ATAAACCTTTCGAG
CDS sequence (LotjaGi1g1v0796800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCAGAGCACCGTTACCGTTACCATTACTTGGCTCCTCCAAAACTCTATTCTCCAATGGCATCTTGCGTTCATCAAT ATCAATACCCCATCATTTCCAAAACCAACAACGTTACCATTCAAACTCCCCAATTGGGTCTCCAACAAGAGTTCAGAAGC TCATAGCTTCTCAATCAGACCCTCTTCTCGCCAAAGAAATCTTCGAATATGCTTCTCGCCAACCCAACTTCCGCCACACT CACTCCACCTATCTCATCCTCATCCTCAAATTCGGTCGCTCCAAACACTTCTCACTCCTCGATCATCTCCTTCTTCGCCT CAAATCTGATTCCCTACCCCTCACTCCCACCGTCTTCACCTACCTCATCAAAATCTATGCCGAAGCCGATTTGCCCCACA AAGCCCTCAAAACCTTCTACACCATGTTGCAGTTCCAGTGCAAGCCTCTCCCCACACACCTCAACCGCATTCTTCAGATT CTCGTTGCCCACCGGAATTACCTTCGTCCCGCGTTTGATCTCTTCAAGGATGCCCACAAGCACGGCGTGTTCCCCAACAC CAAATCCTACAATATTCTCATGCGGGCATTCTGTCTCAATGGTGATATCAGCATTGCCTACACACTGTTCAACAAAATGC TTAAGAGAGATGTTGTTCCTGACATTGACTCATACAGGATTTTGATGCAAGCATTGTGTAGGAAGAGTCAGGTAAATGGA GCTGTTGATCTTTTAGAGGACATGCTGAACAAAGGGTTTGTTCCTGATTCCTTGACGTATACCACTTTGTTGAATAGTTT GTGTAGGAAGAAGAAGCTCAGGGAAGCTTACAAGCTTCTTTGTAGGATGAAGGTCAAAGGCTGCAATCCTGATATTGTTC ATTATAATACAGTTATCTCAGGGTTCTGTAGGGAGGGGCGTGCTCACGATGCTTGCAAAGTTATTCATGACATGCAGGAT AATGGGTGTTTGCCTAATTTGGTGTCTTACCGCTCTCTGGTAAGCGGTTTATGTGACACTGGAATGCTTGATGAGGCATA TAAATACATGGAGGAAATGCTGTCCAAAGGGTTTTCTCCACACTTTGCTGTCATCCATGCCTTAGTGAAGGGGTTCTGCA ATGTTGGTAGGACTGATGAAGCTTGTGGAGTTCTCACCAAATCACTTGAGCATGGGGAGGCTCCTCATTCAGAGACTTGG ATGATCATAATACCTTTAATATGTGAAGGGGAAGATGATGATGGTGCGAAAATCAGTGATGGTTTGGAGAAAGCTCTTAA GATTGAAATTGAAGGTTATACTAGAATTGTTGATGCTGGCATTGGTTTGGAAAACTACTTAATTAGGAAGATACGAGCCA AGACAAGAGCATCTTAA
Protein sequence (LotjaGi1g1v0796800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRAPLPLPLLGSSKTLFSNGILRSSISIPHHFQNQQRYHSNSPIGSPTRVQKLIASQSDPLLAKEIFEYASRQPNFRHT HSTYLILILKFGRSKHFSLLDHLLLRLKSDSLPLTPTVFTYLIKIYAEADLPHKALKTFYTMLQFQCKPLPTHLNRILQI LVAHRNYLRPAFDLFKDAHKHGVFPNTKSYNILMRAFCLNGDISIAYTLFNKMLKRDVVPDIDSYRILMQALCRKSQVNG AVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVISGFCREGRAHDACKVIHDMQD NGCLPNLVSYRSLVSGLCDTGMLDEAYKYMEEMLSKGFSPHFAVIHALVKGFCNVGRTDEACGVLTKSLEHGEAPHSETW MIIIPLICEGEDDDGAKISDGLEKALKIEIEGYTRIVDAGIGLENYLIRKIRAKTRAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 458 | 439 | - | – | |
| Gene3D | 47 | 152 | 106 | 5.9E-8 | ||
| PANTHER | 52 | 385 | 334 | 1.6E-87 | – | |
| PANTHER | 52 | 385 | 334 | 1.6E-87 | – | |
| ProSiteProfiles | 80 | 114 | 35 | 5.492 | ||
| ProSiteProfiles | 115 | 149 | 35 | 8.353 | ||
| SUPERFAMILY | 116 | 395 | 280 | 4.17E-6 | ||
| Pfam | 118 | 146 | 29 | 0.17 | ||
| ProSiteProfiles | 150 | 185 | 36 | 5.941 | ||
| Gene3D | 153 | 273 | 121 | 6.4E-33 | ||
| Pfam | 185 | 234 | 50 | 2.7E-14 | ||
| ProSiteProfiles | 186 | 220 | 35 | 11.871 | ||
| TIGRFAM | 189 | 222 | 34 | 8.0E-9 | ||
| PANTHER | 209 | 410 | 202 | 1.6E-87 | – | |
| PANTHER | 209 | 410 | 202 | 1.6E-87 | – | |
| ProSiteProfiles | 221 | 255 | 35 | 11.63 | ||
| TIGRFAM | 224 | 257 | 34 | 1.4E-7 | ||
| Pfam | 251 | 284 | 34 | 1.8E-10 | ||
| ProSiteProfiles | 256 | 290 | 35 | 12.814 | ||
| TIGRFAM | 259 | 292 | 34 | 1.8E-9 | ||
| Gene3D | 274 | 427 | 154 | 1.0E-36 | ||
| Pfam | 290 | 339 | 50 | 1.2E-16 | ||
| ProSiteProfiles | 291 | 325 | 35 | 13.11 | ||
| TIGRFAM | 294 | 326 | 33 | 5.5E-11 | ||
| ProSiteProfiles | 326 | 360 | 35 | 13.044 | ||
| TIGRFAM | 328 | 360 | 33 | 1.2E-7 | ||
| ProSiteProfiles | 361 | 395 | 35 | 8.002 | ||
| Pfam | 367 | 392 | 26 | 1.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0796800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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