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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0008500 |
| Transcript ID | LotjaGi2g1v0008500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G15820.1 endonuclease; Swiss-Prot: sp|Q9XIL5|PP154_ARATH Pentatricopeptide repeat-containing protein At2g15820, chloroplastic; TrEMBL-Plants: tr|A0A072VEK1|A0A072VEK1_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0008500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:2833124..2837188) extracted from Lotus japonicus Gifu genome v1.2.
ATTCGTTCCACCGTCACTATCCGCCAGTTCCCGCGTCTCTCCGTCAGCAGCGCGGAGCAGCCGGCTGTTCTGCAGGAGGA GGAGGAGGAGCTGCCGGAGTACGAGGTTTTCGATTTCGACGCGGCGGCAGCGGAGGTTGAGGTGAAGCGTCTGCCGCCGC GGCCGGAGGTGGAGGTGAAGGAGCTGAGTGAGTTGCCGGAGCTGTGGCGGAGGTCGAGGGTGGCGTGGCTATGCAAGGAG CTGCCGGTGCACAAGGCGGGGACTCTGATCAGGATACTGAACGCGCAGAAGAAGTGGATGAGGCAAGGAGACACCACCTA TGTCGTGATGCATTGCTTGCGGATTCGGGAGAATGAGACTGCGTTTAGGGTAAGTGTAGTTTAGTGTAGTGATTCTTCTT CGCTTTTATCATTTGTAAACTTTAGGAGTTTATCTTATAGAATAAACACTTAGATAAAGGGTCTCAAACTCTCAATGCAA TGCATGTGTTTGGATAAGGATAAGCTTATGAAAAAACTATGAACACTTGTGCTTTTATAAGAGCTTAACTTGTAGTTTAA GCGATTTCTATGCTAGTATTTGGATAAGTTTAATGGCCTACCAATAAGTTGTTTTAAGCTTAATTTTACAAGCGGTTCAT ATTAACTTATGAATAAACACTTATATCTACCTATAAACTAATTTGAGCTTATTTCGATAAGCTTTTCAAATTTGTTTATG AATAAGGGCTTATGTGAAAATAACCTTTTGAGGTTATATTCATGAACTTTTTATATAGAGTATGAAAATAACGTATGGCT TATTTATAAGCTTTTTTGAGCTTATATTCATGAACTTTTAATATAGAGTATGAAAATAACTTATGACTTATTTATAAGCT TTTTTTAGCTTATATTCATGAACTTTTAGTAGAGTTTTTGAACTTATTCCAGTGAAGTTTTCGAATTATCTGGTATAAGT GCATGATTAAGTTATTTACCTAAAAGAAACCACTCTTAAGTGCACTTTTGAAGTTTGCAAACTATAATCTTTAATAATTT AGATTCCAGTAGAGCTGTAATATGCGAAAATTTGTGCTCGAAAAAAATGAACCAATTGATAAATAAATGAACAAGACTAT GAAGGTAGAGGTGAGAATTCATTGGAAGTTAAACTGCTAGTCAAGTTGTTTGGTTCTTACTAATTCATGCGTATTGTTTC TGTACTATAAGGTATCAGAATGGATAGAGAGAGGGAGGAAGAGAATGATATCTTGAGAGAAAGTAATTGAGGTTTCATCT TATTATCATGTGTTGGATAAGTGATACACCATTTATTTATACTATGAAACTGGAGTAACTAAGCTAAGATGAGACGACTG CACATGCTAACAGATAAACTCTCTAACTGGATTAACTAATCTTTTGTTTTTGTGTAATTAAACCATGCTTTTGTTTTCGT GTATTTTTTTGTAACATTTTAAAGATGATTTTGCATGTGGAGATTGATGAGAACCATAGGCTTCAATTCAACTATGGGAG GAATTGTGGAAAATGCTATTTTATTTGCATGTGATATTGGTTTAATGCTTATGGAAGAAGGGAAGCCTGTGGTGAGTCTT GTAAGTTATCATGTATTGACAGTGTTGTTTTGGATATTCATGAAATTGGTGTTTTAGCAAAGTTCCAAAGCTGTGATACT AAACGTTAGTTATAGTTTTCTGGTATAAAGCTTGTGGATTATAGATTCAGCGAAAGGTATAGAACTTTCCCTTGGAGATA AATGATCAACTTTTAAAATGATCAAATTTAAGTGTATCGAACTTTAAAAATAGTCAACTTTTGAGTGTGGTATATATTTG GGTGTGGGATAGTAAATGGTATATGTTAGAAGTCCCACATTGGCTAGAGATAGAGCATAGATAGCCTTTATAAGGGTAGT GCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATAGTATAGAACTTCCCTGTTGC TAGTCTTGCGTCATTATTGATCATTTTGTTTACCTTTAAATGTTCTATCAGATCAGTTCTTCCCGGGAATTGGTTTTTTA TTCTGCTTTTCTCCTACTTTTGGAATGGGTATTTGGCATTGATTATTCATTTATTTGATCACATAAGCAGAACATTTTGC AAAATATTACCATTAGCTGGAAATCAATTACTAATTTATTTATTTTTTGCCCTCGTAAAGGTATACAAGTGGATGATGCA ACGAAGTTGGTATCAATTTGATTTTGCTCTTGCCACTACGCTCGCAGATTACATGGGTAAAGAGCGAAAGTTTTCTAAGT GCCGTGAGGTATTTGATGATATTATCAATCAAGGCCGTGTTCCTAGCGAGTCAACTTTCCATATATTGATTGTAGCTTAC CTTAGTGCTCCTGTTCAAGGTTGTTTGGATGAAGCATGCAGCATTTACAACCGTATGATTCAGTTGGGTGGTTACCAGCC CCGTCTTAGCTTGCATAATTCCCTCTTCAAAGCTCTTGTAAGCAAACCAGGGGTCTCTTCAAAGGATTACCTTAAGCAAG CTGAGTTTATATATCATCAATTGGTTACTTCTGGACTTGATGTGCATAAGGATATTTACGGGGGTCTAATTTGGCTGCAT AGCTATCAGGACTCCATAGATAAAGAACGGATAGCAGCATTGCGGCAAGAGATGTTACGTGCTGGAATTAAGGAGGGCAA AGAGGTGCTGGTATCGATCTTGAGGGCTTGTGCAAGGGAGTGTGAGGTGGAGGAAGCAGAGAAAACTTGGTCCAAACTTC TTCCTTTTGAAAGTAATCCCCCATCGCAAGCTTTTGTGTATAAAATGGAAGTCTACTCAAAAGTTGGCATGCCTATGAAG TCCTTGGAGATATTTAGGGAAATGCAATTGAAACTAGGTAAAATAAGTGTTGCAGCCTATAGTAAAATAATAGAGATACT ATGCAAAGCACAAGAATCAGAGTTTGCAGAATCAATCATGACAGATTTTGTCAAGAGTGGCCTGAAACCCCTTACACCAT CATACATTGATTTACTAAACATGTACTCCAATTTGGAATTACATGATAAATTGGAAGAGACATTCTCCCAGTGCCTGGAG AAATGTCGTCCTAATTGTACTCTCTACAATATATATTTGGATTCTTTGGTAAAAGTTGGTAATCTTGACAAAGCAGAGGA TATCTTTTACCAAATGAATCGGGATGTGACTATTGGTGTCAATGCTCGATCGTGTAACGCAATCTTAAGAGGATACTTGT CCTCGGACAATCACTTAAAGGCGGAGAAGATCTATGACTTTATGTGCCTAAAGAAGTATGAAATTGAAACCTCATTGATG GAGAAGCTTGACTATATCTTGAGCTTGAGAAGAAAATTTATTAAAAAGCCTGTGAGCCTCAAGCTAAGCAAAGAACAGAG GGAAATCTTAATTGGATTGCTTTTAGGTGGCCTGCAGATTGATTCTGATGACCAAAGGAAGAATCACGTTATCTGTTTTA ATTTTGATAGCGATTCCATCAGTCATCATGTCCTGAAGAGTCATTTACATCGCCAGTTTTATGAGTGGCTGCATCCTACT TGTAAGCCAAGTGATGACAGTGAGGACATACCAGCTAAGTTTTGCACCATTGCAAGCTCTCATTTTGGCTTTTATGCAGA ACAGTTTTGGTCAGAAGGTCAACCTACAATTCCAAAACTAGTCCATAGGTGGCTGTCACCGTGTGTTCTTGCATACTGGT ACATGTATGGGGGTCGACGAAGTTCGTCCGGTGATATTTTACTAAAGATAAAGGGAAGTCGTGAGGGTGTTCTGAGCATT GTCAAAAAGTTCAAAGCAATGTCCATGGATTGTAAAGTAAAGAGGAAAGGAAAGGTATTTTGGATTGGTATTCTCGGAAG CAATTCAACTTGGTTCTGGAAATTGGTTGAGCCATATGTTTTAGAAGACGTAAAATACTTTCCAGAGACACGTGATAAGA TGCTGGAGCAGGATTCAGTGGAAAGTCAAGACAACATTAACTTCAATAGCGATTCATACGAATGA
CDS sequence (LotjaGi2g1v0008500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCAAGGAGACACCACCTATGTCGTGATGCATTGCTTGCGGATTCGGGAGAATGAGACTGCGTTTAGGGTATACAA GTGGATGATGCAACGAAGTTGGTATCAATTTGATTTTGCTCTTGCCACTACGCTCGCAGATTACATGGGTAAAGAGCGAA AGTTTTCTAAGTGCCGTGAGGTATTTGATGATATTATCAATCAAGGCCGTGTTCCTAGCGAGTCAACTTTCCATATATTG ATTGTAGCTTACCTTAGTGCTCCTGTTCAAGGTTGTTTGGATGAAGCATGCAGCATTTACAACCGTATGATTCAGTTGGG TGGTTACCAGCCCCGTCTTAGCTTGCATAATTCCCTCTTCAAAGCTCTTGTAAGCAAACCAGGGGTCTCTTCAAAGGATT ACCTTAAGCAAGCTGAGTTTATATATCATCAATTGGTTACTTCTGGACTTGATGTGCATAAGGATATTTACGGGGGTCTA ATTTGGCTGCATAGCTATCAGGACTCCATAGATAAAGAACGGATAGCAGCATTGCGGCAAGAGATGTTACGTGCTGGAAT TAAGGAGGGCAAAGAGGTGCTGGTATCGATCTTGAGGGCTTGTGCAAGGGAGTGTGAGGTGGAGGAAGCAGAGAAAACTT GGTCCAAACTTCTTCCTTTTGAAAGTAATCCCCCATCGCAAGCTTTTGTGTATAAAATGGAAGTCTACTCAAAAGTTGGC ATGCCTATGAAGTCCTTGGAGATATTTAGGGAAATGCAATTGAAACTAGGTAAAATAAGTGTTGCAGCCTATAGTAAAAT AATAGAGATACTATGCAAAGCACAAGAATCAGAGTTTGCAGAATCAATCATGACAGATTTTGTCAAGAGTGGCCTGAAAC CCCTTACACCATCATACATTGATTTACTAAACATGTACTCCAATTTGGAATTACATGATAAATTGGAAGAGACATTCTCC CAGTGCCTGGAGAAATGTCGTCCTAATTGTACTCTCTACAATATATATTTGGATTCTTTGGTAAAAGTTGGTAATCTTGA CAAAGCAGAGGATATCTTTTACCAAATGAATCGGGATGTGACTATTGGTGTCAATGCTCGATCGTGTAACGCAATCTTAA GAGGATACTTGTCCTCGGACAATCACTTAAAGGCGGAGAAGATCTATGACTTTATGTGCCTAAAGAAGTATGAAATTGAA ACCTCATTGATGGAGAAGCTTGACTATATCTTGAGCTTGAGAAGAAAATTTATTAAAAAGCCTGTGAGCCTCAAGCTAAG CAAAGAACAGAGGGAAATCTTAATTGGATTGCTTTTAGGTGGCCTGCAGATTGATTCTGATGACCAAAGGAAGAATCACG TTATCTGTTTTAATTTTGATAGCGATTCCATCAGTCATCATGTCCTGAAGAGTCATTTACATCGCCAGTTTTATGAGTGG CTGCATCCTACTTGTAAGCCAAGTGATGACAGTGAGGACATACCAGCTAAGTTTTGCACCATTGCAAGCTCTCATTTTGG CTTTTATGCAGAACAGTTTTGGTCAGAAGGTCAACCTACAATTCCAAAACTAGTCCATAGGTGGCTGTCACCGTGTGTTC TTGCATACTGGTACATGTATGGGGGTCGACGAAGTTCGTCCGGTGATATTTTACTAAAGATAAAGGGAAGTCGTGAGGGT GTTCTGAGCATTGTCAAAAAGTTCAAAGCAATGTCCATGGATTGTAAAGTAAAGAGGAAAGGAAAGGTATTTTGGATTGG TATTCTCGGAAGCAATTCAACTTGGTTCTGGAAATTGGTTGAGCCATATGTTTTAGAAGACGTAAAATACTTTCCAGAGA CACGTGATAAGATGCTGGAGCAGGATTCAGTGGAAAGTCAAGACAACATTAACTTCAATAGCGATTCATACGAATGA
Protein sequence (LotjaGi2g1v0008500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRQGDTTYVVMHCLRIRENETAFRVYKWMMQRSWYQFDFALATTLADYMGKERKFSKCREVFDDIINQGRVPSESTFHIL IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRLSLHNSLFKALVSKPGVSSKDYLKQAEFIYHQLVTSGLDVHKDIYGGL IWLHSYQDSIDKERIAALRQEMLRAGIKEGKEVLVSILRACARECEVEEAEKTWSKLLPFESNPPSQAFVYKMEVYSKVG MPMKSLEIFREMQLKLGKISVAAYSKIIEILCKAQESEFAESIMTDFVKSGLKPLTPSYIDLLNMYSNLELHDKLEETFS QCLEKCRPNCTLYNIYLDSLVKVGNLDKAEDIFYQMNRDVTIGVNARSCNAILRGYLSSDNHLKAEKIYDFMCLKKYEIE TSLMEKLDYILSLRRKFIKKPVSLKLSKEQREILIGLLLGGLQIDSDDQRKNHVICFNFDSDSISHHVLKSHLHRQFYEW LHPTCKPSDDSEDIPAKFCTIASSHFGFYAEQFWSEGQPTIPKLVHRWLSPCVLAYWYMYGGRRSSSGDILLKIKGSREG VLSIVKKFKAMSMDCKVKRKGKVFWIGILGSNSTWFWKLVEPYVLEDVKYFPETRDKMLEQDSVESQDNINFNSDSYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 636 | 636 | 0.0 | – | |
| Gene3D | 6 | 228 | 223 | 6.8E-19 | ||
| SUPERFAMILY | 16 | 394 | 379 | 1.23E-5 | – | |
| ProSiteProfiles | 38 | 72 | 35 | 7.355 | ||
| ProSiteProfiles | 73 | 110 | 38 | 6.675 | ||
| ProSiteProfiles | 190 | 224 | 35 | 6.478 | ||
| ProSiteProfiles | 225 | 255 | 31 | 5.788 | ||
| Gene3D | 229 | 420 | 192 | 5.5E-24 | ||
| Pfam | 234 | 253 | 20 | 0.2 | ||
| ProSiteProfiles | 260 | 294 | 35 | 8.89 | ||
| ProSiteProfiles | 329 | 359 | 31 | 8.616 | ||
| Pfam | 332 | 358 | 27 | 0.002 | ||
| TIGRFAM | 332 | 356 | 25 | 1.4E-4 | ||
| ProSiteProfiles | 365 | 399 | 35 | 7.673 | ||
| Pfam | 368 | 393 | 26 | 0.31 | ||
| SUPERFAMILY | 422 | 610 | 189 | 1.62E-33 | ||
| Pfam | 431 | 596 | 166 | 1.5E-41 | ||
| Gene3D | 520 | 617 | 98 | 6.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0008500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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