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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0025900 |
| Transcript ID | LotjaGi2g1v0025900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G56310.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310; TrEMBL-Plants: tr|G7IDE6|G7IDE6_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0025900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:8754677..8757798) extracted from Lotus japonicus Gifu genome v1.2.
ATCTACTTCTTGTTTTGTTTGGATTTTAAGTGTAAACCAACAAGAATGCTGTAGTTTGTGTATAGCCTTAAATGTGTTTG AGGTCATTTACTAAGAGGAACCAACCTTTCAAAAAAAACTAAGAGGAACCAAATTGGTTCTCTAATTTTCAAATCCTTTG CAGTTAATTCCTGAGATTTTTTTTAATTAAATTAAGGACAAAAGTCTTTTTAGTGCCTATGTATCGTGGGCTTACTCACA TGGTTTTTGCTTTTCCTATGTGTAAATTTTTGTATTACTTTAGATTCCTCTAAAAAATTTAACCATTTTAAATCCCTAAT CTTCAACCTTCTTCCTCATCCTTTTCCCTTCTCCTTCTACTTACACAACTCAAACCTAACAACCTAAAAAATCATCTTTG AAATCCAGAAATTCATCCCCAACCCAATCCCTCACAACCTAGAAAAAAAATCAAAATTCTATGAGCAAAACCCCTCTCCA AAATCTTCATAACCCAAATTTAAAAAAAATGCTCAAATCGAGTTTACCCAGAAACGTAGGTCTTCTTCCCAAAGAGGGAC TCATCCCACTTTGAAAACTTACACGAAAAATTAGAGGAATAATGTGTAAAAGTGAATGTGCCAAAGGATTTGAAGTCCAT GGCTGAATTTGAAAAAAAAAAACTAAAACATAAGTATTTAATAAGCCTTGTGAAGACACGAAAGTTTAAATGTAATTTGA AGAATTGTGGCCATCTTGTTACTATCTATGAATTTGACATTGTCATTGTCTCGAACGCAGCTGCATGTGAGGCAATGGAA ATGGAGGTGGAGACCCTCCTTCTTCTCCTCCTCCTCGCTTCCACACGCTGATGAACAGGCGCAGCAGCTGCTCCGCCGTT GCTCCAATCTGAGCCACCTCCTTCAGACACAAGCCTTCATGCTCACCCGAGCTCTCGACCAAGACCACATCCTCCTCTCG CAATTCATCCACACCTCTGCATCTCTTGGTTTTTCCTCTCACGCTTACTCCATTTTCACCTCCTCCAATCACCGACCACC CAGCATCTTCATCTACAACAACATCATCTGGGCTCTCTCCTCCTCCAACCCCACACGCGCCGTCGCTCTTTTCAACTCCA TTCGCCTTCAAAACTTGCGACCCGACTCTTACTCTTTACCTTTCGCTTTGAAGGCGGTTGTTTCTTTATCTGCCGTCGTC GTCGGTGAGCAGATTCATTGCCAAGCTTTTGTTACCGGGTTGGACTCCCATCCCTCTGTGGCCACATCACTCGTTCACAT GTACTCTTCCTGCAGTAACAATGTTGCTTCTGCTCGGAAGGTGTTTGATGAATTCGTTGGACATGGTTCGGTTTCGCTCT GGAATACCATGCTTGCAGCTTATGCCAAGGTTGGTGATATGTGCAGTGCAAGCAACTTGTTTGAATCTATGCCTCAAACA GATAAGAATGTTGTTTCATGGACTGCACTAATTTCAGGTTGTTAGACTAATGAAAATGCAACTTATCATATTTTGATCAT AATTTAGAGTAGTTAAGGACTTAAGGTGTTTTTTATGTGTGTCTGTGCTCTCACAATTCCAACCCGGATGTGGTGAATGT CAAATGTCTTTCAAGGGTGCGGTTCCTAGGAATCAAACTCTCGTCACTTTTTACCACTGCGACCGGCCGTCATTGGGTAT TAAGGTCTTATTTAGTTATTGTGTAACACAGTTTTTAGTTTTTTAAAATAGAAAAAAGAAATAACTCATTTGATATAAAT ATAAGTAAGTGTTTTGTAAGATTACACCAAGTGATGTTATATCAAATATTAATTGTGTTTATTTTTCTTAGACTAAACCT TATAATTTCATCACAGGTTATGCACAGACTGATAATCCTAATGAGGCCATCATGCTTTTCCACAGAATGCAGCTCCAAAA TGTGCAGCCAGATGAAATTGCAATATTGACTGTGCTCTCTGCCTGTGCTGATTTGGGTGCTCTTCACTTGGGGGAGTGGA TTCACAACTACATCGAAAATGAAAAGCATGAGATACTTAAGAATAGGGTTGTCCCTCTTTATAACTCTCTCATACACATG TATGCCAAATCAGGCAACATAAGTAAAGCACTCCAAGTGTTTGAAAATATGCAGCACAAAACGATTATAACCTGGACAAC GATGATTGCGGGGCTTGCTTTACACGGTCTAGGAAATGAGGCCCTTCGTTTATTTTCTCGCATGGAGAAGGCTCGAGTTA AGCCGAATGAAGTCACCTTCATCGCAGTCCTCTCTGCTTGTAGCCATGTCGGGTTGGTTGAACTGGGACAAGATGTTTTC ACGTCGATGAGGTCGAAATATGGAATTGTGCCTGAGATTGAGCACTATGGCTGCATGGTTGATTTGCTTGGACGTGGTGG CTACCTTGAAGAAGCAAAGGAGCTAGTTAGGGTGATGCCGTTTGAGGCGAATGCAGCTATATGGGGATCCCTTCTTGCTG CCGCAACTAGATGCGGTGATGCTGAGCTTGCAGCGGAAGCTTTGCGTCACCTGATAGTGCTCGAACCCCAGAATTGCGGG AATTATTCACTCTTGTCAAATACGTATGCTGCGCTTGGAAGGTGGAGTGAAGCGCGGATGGTGAGGAAGGTGATGCGGGA TAAAGGTGTGGAAAAGGTTGCAGGTATGAGTTTTATTGAGGTGAACAACATAGTCTATGAATTCATTGCGGGAGACAACA AATTAAACATGTACTTTGTTGAAGTCTTGCATAGCTTAGATGGGCAACTAAGGTTGATTGATTAATGATTTATCTAAAAA GCGTGTACAGGAGGACCTCTATCTGTGTTTGTATTCACCTTGTCGCAAACGGACCTTGAGAGTCTCTTTCATATTTGTGA CATTGGAATGTGAAATCTAAGTTCACATGCTCCAAATGGAGGTTTTGGAAGAAAACCAAACATCCAAGTCTGATGCAAAT TAAACAATGTTATCAAGTCTCGAGCACATACAAATTGTGTAGAGAGAGTTGGCTCAATTATGATGTGAATATTCTCGACT CGAACAAAATTGGCTCTCGTGAATAATAATGTGTTAAACTAAAAAATATATTTTTTAATGAATGTAAAGTAGTTTAACGG TT
CDS sequence (LotjaGi2g1v0025900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTCCACAGAATGCAGCTCCAAAATGTGCAGCCAGATGAAATTGCAATATTGACTGTGCTCTCTGCCTGTGCTGA TTTGGGTGCTCTTCACTTGGGGGAGTGGATTCACAACTACATCGAAAATGAAAAGCATGAGATACTTAAGAATAGGGTTG TCCCTCTTTATAACTCTCTCATACACATGTATGCCAAATCAGGCAACATAAGTAAAGCACTCCAAGTGTTTGAAAATATG CAGCACAAAACGATTATAACCTGGACAACGATGATTGCGGGGCTTGCTTTACACGGTCTAGGAAATGAGGCCCTTCGTTT ATTTTCTCGCATGGAGAAGGCTCGAGTTAAGCCGAATGAAGTCACCTTCATCGCAGTCCTCTCTGCTTGTAGCCATGTCG GGTTGGTTGAACTGGGACAAGATGTTTTCACGTCGATGAGGTCGAAATATGGAATTGTGCCTGAGATTGAGCACTATGGC TGCATGGTTGATTTGCTTGGACGTGGTGGCTACCTTGAAGAAGCAAAGGAGCTAGTTAGGGTGATGCCGTTTGAGGCGAA TGCAGCTATATGGGGATCCCTTCTTGCTGCCGCAACTAGATGCGGTGATGCTGAGCTTGCAGCGGAAGCTTTGCGTCACC TGATAGTGCTCGAACCCCAGAATTGCGGGAATTATTCACTCTTGTCAAATACGTATGCTGCGCTTGGAAGGTGGAGTGAA GCGCGGATGGTGAGGAAGGTGATGCGGGATAAAGGTGTGGAAAAGGTTGCAGGTATGAGTTTTATTGAGGTGAACAACAT AGTCTATGAATTCATTGCGGGAGACAACAAATTAAACATGTACTTTGTTGAAGTCTTGCATAGCTTAGATGGGCAACTAA GGTTGATTGATTAA
Protein sequence (LotjaGi2g1v0025900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFHRMQLQNVQPDEIAILTVLSACADLGALHLGEWIHNYIENEKHEILKNRVVPLYNSLIHMYAKSGNISKALQVFENM QHKTIITWTTMIAGLALHGLGNEALRLFSRMEKARVKPNEVTFIAVLSACSHVGLVELGQDVFTSMRSKYGIVPEIEHYG CMVDLLGRGGYLEEAKELVRVMPFEANAAIWGSLLAAATRCGDAELAAEALRHLIVLEPQNCGNYSLLSNTYAALGRWSE ARMVRKVMRDKGVEKVAGMSFIEVNNIVYEFIAGDNKLNMYFVEVLHSLDGQLRLID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 84 | 84 | - | – | |
| PANTHER | 4 | 248 | 245 | 3.5E-66 | – | |
| ProSiteProfiles | 14 | 48 | 35 | 5.327 | ||
| Gene3D | 18 | 136 | 119 | 2.3E-27 | ||
| ProSiteProfiles | 53 | 83 | 31 | 9.646 | ||
| TIGRFAM | 57 | 82 | 26 | 4.1E-7 | ||
| Pfam | 57 | 83 | 27 | 8.2E-7 | ||
| ProSiteProfiles | 84 | 118 | 35 | 11.038 | ||
| Pfam | 84 | 131 | 48 | 3.7E-11 | ||
| Phobius | 85 | 101 | 17 | - | – | |
| TIGRFAM | 86 | 120 | 35 | 1.8E-7 | ||
| Phobius | 102 | 120 | 19 | - | – | |
| ProSiteProfiles | 119 | 154 | 36 | 7.87 | ||
| Phobius | 121 | 139 | 19 | - | – | |
| Gene3D | 137 | 276 | 140 | 9.2E-14 | ||
| Phobius | 140 | 297 | 158 | - | – | |
| ProSiteProfiles | 155 | 189 | 35 | 6.906 | ||
| Pfam | 158 | 182 | 25 | 0.032 | ||
| SUPERFAMILY | 184 | 242 | 59 | 1.07E-7 | ||
| ProSiteProfiles | 221 | 255 | 35 | 8.539 | ||
| Pfam | 225 | 253 | 29 | 0.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0025900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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