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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0072000 |
| Transcript ID | LotjaGi2g1v0072000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase family; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1; TrEMBL-Plants: tr|I1KKV7|I1KKV7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0072000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:17743259..17750705) extracted from Lotus japonicus Gifu genome v1.2.
CGAACCACCGCCACGACGGAGACGCCTGAGGAGGAGCCTCAGGCACCGCTACTCCGCTCGCGCCACGACGGCGGAGGCCA GCCACCCACACTCGCGCTCCTTCTCGGTCGCGCCGTTGGCCGACGAGGCCCGTCGGTGCTGGTGCGGGAGACAGCGGCGC GCGAGCTCGAGGAGCGGCGCGCCGACTGGGGATACTCGAAGCCGGTGGTGGCGCTTGACATGTCTTGGAACATGGCGTTT GTGGTGGTATCAGCGGCGATGCTTGCCTGCACCGTCGGCGAGCAACCGAACACGCCGATCCGGCTGTGGATTGTCGGCTA CGCGCTGCAGTGCCTCTTGCATGTCGTGCTGGTGTGGTTCGAGTACCGGCGTCGGAGCCGGAGGGACTCGAGGCGGCGGC GGAGGCTGGTGGAGAGCGACGCCGGAAGTACTGACGGCAGCGACAGCGATGACGGCGATGCGAACTCGTCTCGCTCCGGG TACGTTTGACTTAATTCCTATGTGGATTTTTTATTTTTATATATTTAAATTAATCTTTTCATTTTTCTTTTTATTAAGTT AGCATTTGTAGGTATTTAATTAAAAAAAAAAACATTTATACTTTGTAGCTTTGAAACTTTGCTAACAACTCAAGATTTGA GAGTCTTGGTTCATTGACATGTTAATGGAACAAAACTTAACACTAAAGGTTCAAATCAGGGGAGGGGGAGAGGGGGGAAA GGAAAATAAATGTAATTTACTGTTATATCATTTGAGTAGGTGGAAGAAAGAAAACAAATAAATCCTCAATAATCATCCTT CTCACACCTATTAAAATTAATCTCATCAGATTAATCCCTAACATAAAGAAGTCACATTTTTAGGCCTAGAGTATGACAAT ATCCGGCACATCACATATGCTCTTGGATACCCCACACTATCATATGTTAGGTCTAAGTAAGTTAAGCTAGGGACTGATTT GATGTGCTTGAAAACGTTAGGGATGACGTTGAGAGTTTACTTAAAAAAGCTTTAGAGTAAATGCTTGTTTAAAAGTTACG GATGACATTGAGAAACTTTAGTTAGGGACGATGTGACGCCCTGAGCTGAGAAGGGCGAGGATTGATCGCCTTCTATGTGG AGGGACGCACCACACCCGAACAAGAGGTATTCCGTGGCTGTGTAGGGATGGACTATACAGTTGAGGAGGGCATAAGAGAT TTGATTGGTACTACTCATAACAACAAGTTGCAACTTCTTTTCGGGAGCCCAACTGATAAGAACTCCATGGTTAAGTGTGC TTGCCTTGGAGCAATATCGTGATGGGTGACCTCCTGGGAAGTTTTCCCGGGAAGTGCGCGAGTGAGGACAAAGCGCACTG AAAAGACTCGTGTTGTTACCGTGAGGCCAGTCGTCAGATCGGGACTGGGAAGTTTTCCCGGGAAGTGAGGCCAGTCGTCA GATCGGGACTGGGAAGTTTTCCCGGGAAGTGCGCGAGTGAGGACAAAGCGCACTGAAAAGACTCGTGTTGTTACCGTGAG GCCAGTCGTTAGATCGGGATGTTACAGACGACATTGAGAAACTTTAGTTAAAACGTCAATATGACTGACTTAGTCCGATA TAAAACAGCTTTAGAGTAAATGCTTGCTTAACGTGAAGCCATGTTTGTAGTAATATAGGTTTGTCTTTGTTAATACTAAT ATATATAAGAACATTTTTGCAATTAAAGAAAAATAATGACGGATGTTTTAGTTAACATAGTCAATAAATTACTAAGTCTT TTTCACTCGCACCCTTCCATTCCACATGTTTGTAGGGGAGGCAAAACTTGGAGGGGGAGGTTAAGTCTTCATTCCCCCTC CTCCATATCCCTTCAACTGAATAATATCTAAAATATTAGCTTTTTTGCTATATTTGGAGCATATTGAAAGTAGAATAGGA AGAATTTCACTAAAAGATTGAACCAAAGAAAACAAAAGCGAGCGATGTTTTACATTGTTCAATTCCATCTGTGTCAAATG TTTCTTTTAGTGAGTGGTCTAATTTCAATTGTTATTGTCACTTTTAAATACTCCTTTTTATTTAAGCTCTAGTTCTACAC GGGTTTGTGGGATTGCCAATAATACAGGAGAGTCGTGTCTGAGACCCTGGACCCGAGTTTTTTGCTGTGGACTACTTGAA GATATTGATGTAATATTTATATGAACTAAGTTGTTGTAAGATAAATTGATTGAGGGAGACTGAGAATCCAAGATAACTAA TGGTGCGTTGCAGTTTTTCATAATGTGTTGTGTTAATATATTATTTTAGTTTTTGCAATTATTACTAGTCCTGATAAATT ATTTGTTGGTAAATATCTGGTAATAATTTTAATTTTTTACATTGAAAGTTTTATGTTTGTTTTAAGATCAGTAAATGGGA TCCTTCGGCTGATAATTTTGTCACAGAAGTTGTATTTCACATAATGTAATGTGAGGACTAACCACAGTCCCCAGGACAGG AGTCAGGACTACCATACACCTTAGGAGAAGGAAATAAAATTTCTGTTCCTATTCTAAGTCCCTGGCTGCTGAAGCATGTT AATTTACTTTAGTATTATCTGCGGTTTGTGGCTTATTATCATATACATATTTGAATGGCATGCAATTAAAATTCGTAGAC ACTGATTTTGGTCATCTGCTAAACAGATTCACAAAACGATGTGAAACAATAAATACTGGGGTTTCATTCATTTGGTGGAT GGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATGCTTATGCAGGATGCCCCACGGTTGTACTGGTAAGCCCGTTATA GTCTGATATGTACACTTGTAAACTCGCAGCATGCACATGATATTTGCTATTTGTTCAGGTGCCTGAACAATTTTCTCCTT CATAAGTCTTTTTTTCTTTGTGGGCGGGGGGAGGGGTGGGGATGTGTCTATTTACAAAATACATCACAAGCTCCTTTTCA ATTATTTCTTTTGGATAATAGAAAAATGGAGAATTCGGTGATTCTTTTTTGCTAATATTCAGACATGTGTTATATTTAAT AGATTTATAATTATAAAAAAATTCTTATGTACAATATTTCAAGTTAGTGAAACACTTGACTAAATATTAATCTTTACTTC AAAGAGGTTTTTCTTTTCAAATTTTTATTTAAGGCCAACTTTGAAATATGGTCCTTGAAGTGACACCCAGTTGATCCTTC AAAGAAGGAAATTGGTTTCATTAATTTTTATTGATTAGAAGAAATGGAGAAAAAAAGGTGATGTTGAGTATATCTGGGTT GGATCACAATATTTTATGGATTGTATGGTGAATTTTGTTGATGTTAATGTATGAAAATATCTGTTTTTGACTTCTGCAGG TTGGCTGTTGTTTTTCTGGCTTTTGATGTATTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCT CTGTTGTTGCTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCTGGACAGGTATGGATAAAATAAAAATTAAATGTCA GGCAACATGTGTGCCTTCTAATTGTTTTCGTTATCTCATTTTGAGAGAAATATAGGAAGGTGCTTCAGAAGCAGATCTTA GTATACTTCCGAAATACAGATTTCAAATACTAAACAATGAGGAAAAGCCTAGTGGTGGAGCCGGATCAATGGTTCCCACA GAAACCAGCAGTGCTTACTTGGCAAATGAAAGAACACTTTTACCTGAGGATGCGGTATGCTTTCCTTAAACAAATAATTT ATTTCAGTCTAGTGTTTACTACTTCTGAAGAATAGAAATGAATGGTTCCCTAATTTTCTATTTTGGTCACAGCACATAGA AGTTCATACTTTAGCTCAATGTGTTTGTATGTATGTGAATCTAGTTATCCAAAGGGGAAGGTAACTAATCAAATTTCTAC ATCTGAGTGCTGATATTGCCTTTGCAGACTTCATATAGTAGGTTCCGGAAGGCTTATTTTGGTTTGCATTTGTGAACTAA TTTATAAAATATGTGGTTTAGAAATTTGAGAAAAAACTAAGACGTTTAAATTTGAGTCAAAGAAACAACTGCTGGAGTTA TGTCCTTTTTTTAGTAAGTTTAATTTAGAAGCTACAAAGAGGTTACAACTTTTTATTTTTAAAGAGCTAGAGGTACAACC TTGGGCAATATTATTATTATTATTGTTGTTGTTGTTGTTTTAATAAGTTTGATGTAGAACTATGAATCACGAACGCATGT CTCTAAAGAACATTGACACTCGTACTTTACGTGTCAGACACCTTTTTGTGGTGTCTGAGTAAATTTTTTTTCTACGGCTT GCACACTTTGAGCCAACATCTCTTGTTGGCTGGACACTTGAAAGACATTGATGATATAGTGGGAATGAGTTTAGATCACT TGATGAGAGTGAAATTCTTCAAGTTGCTAATTTATTATTTGATGAACCAGAGCTAGAGTCTACTCTAGGGTTTAGGCTTA TCAAAAAAAAAAAGCTAGAGTCTAATTTTTTTTTCTTTTTCGATGATGATGATTAAGAGGGAGGAGAAAACCGATAGATA GATATTAGCTCTTTCTTTATGGGACACAATGTTTACTACTTTACTCTGTAAAATTAAAATGAGCGCATAAGAAGTTGTTT TATTCTTTCTTTTCTATAAATAGACTAACTTGTCTTGATTTTGAGAAGGTGGATAATGTGAGAGGAGTGTGTTATAGTGA GAGGTGAGAGCATTAAATAATAGCCATTGGATTAGCAGATATGGTTCAGATTTAAACCCCACTTTAAAATTGCACTACTC TATTTCACCCACGCCTTCTATCTTCTTCTCCTCTCTCTCACTCTCACTCTTACAGTCTTACTATTAAAAGATCTTCTCCC ACCCACTTAATATTTTTTTAATAGATTTCAGTTTTCATAGACTGTAATCGTTAGGATCTGAAAAAATCCTAACAGCCAAA TGATAGAAAAATAAGGATAAAGGATAATTTTTGGTATTTTTATTATAAAAAATGGGAAATAGGGCTGGTTCTTCTAATAG GGCTGGTTCCCTTCACAACTCAATAATTCAATTCCATAATCTAACCTAATGAAGGAGCTCTTATTTATAATAGACTAATC CTAGACTTGAACCTAAGAAATAAAGATAGATTGCCAAAATAAAAGATAATCCCTAAAATAAAAGATACTCCAAATCTAAA GACAACCCAACCCCAAAATAAAAGATCTTTTAAGATAGACTCTAAAACTTAAAAAATAAATAATAAAAAAATCTAAATCC CTAATAATTAGGTCCTAACAATACTCCCCTCCAAAAATCAACCTTGTCGTCATGGTTGGAAGCTAGCAGACTAGACAAAA GCTTCTCCTCCTAGATCCCATTGTAAGCGGCAATCATGGTAAAACGCCAAATCAGCAAGTGCCCATATGTCAATGTGCGG CGGCATTGGAGGAGGTCGCTTGGTAAAGACCCATAGCGCCATCAACGATGAGAACCCAGTCACATCAATCGAAGGAACAC CCAAGTTCATGGTCGTGCGAGTCTACATGGATGAACACATTGACACTGGAACGTGCGTCAATGATTGTGTTGAACCTCTT CAACCCAAGAAACTTTCTGATGTTCAATCAATGTCACCCAATTCCATGTTTTGAACACAGAAAGTCATAGTTGTTAGAAT GCCTTCAACTTTTGTCTTGTTCTCTGCCCTTCGATGACAATCAAGCTTCAACTCCTCCTCGGGTTCATCTCCTTCCAACA TAATACTAGCCACCATTCCCGCTCTGGTATGAGAAGGCGGGGGAAAAGAAACCTCTAGAGCGAGAGGTTGTTCTTCAGCA AGATGAAATTCCTCATCGACATCCCGAGCAATCACCATGGCACGAAGGAACGCAATCTATACGAACCAGTAGTCTGAGAC CCGCCATAAAATACCCCAACAAAAGTTCTTAAGAAAGATTAGGTACTTGGGCCACCAAAGCTTCAAATTTTCTCCCTTAA GCATCAACTGTACCTCTCTATCTGAGAGTTTTCAACCTGTGGCAAATGTTACCGTTGCTGCCGTGACCAAAACATCAAAG CAAGAGTGGGATCAATGAATTCCAAGTAAGATCGGGAGTTTGACAACAGCAGAATCGAAATCAATGAGCAGCTTCCCCTT CCATGCAGAGGAATGCAAATTGCATCTTGTGTCCCTCCGAACGATGCAAGACACCGGATCCACCCCCTTCAAACAATGGA AGGTCGACTTGAGTCCAAAAAGGAGGATCCATGGCGGTCAAAACCCAAAACGGCGGATGAACAGTCTTTGAAAAGTACAC GGATGAACAATGACTATGAGCAGTGCACGACTGAACAGAGACTGTGAGGGTGTGTTAGGTACCAGAAACAGAGTAAGAAT TAGGAACTGGAAATACTATATTAGCACTGAATCCTCTGGAATGAACCCAGAAGCAGTGTTTTCCGAGAATATGGAAAGAG GAAAATAACATGAGCAAATTAGAGAGTGCTCAATCTCCCCCAAGTCCTAGCCAAATTCAGCCTAGGAGATTCTCTCTCCA TAACTAACATATATTCCCTAAGGCTGATTTCTCTATGGTCCCCCCCTCACCCACATGGGTGCTGCCACCTCATCAGGTGG TTATTTTGAAATGCTAGCTTCTAGAAGGTGCTGTCATCAGGGACAGCTTGCCCCTGCTTGGGCCTCGTAGCATAAACCTT TCCAAATCTGGGCCTGGTAACCGGGTCTGTATCAGGGTGTTTGGGGAAGGCGGCAGGTGCGGTAGTGGCAAAGAGATCCT TTAAAACGACTGGGTGGAAGTGGATGGGCTGCGTGGTAGATGCATAGGATATCCGACAGATGTGGTAGAGGCAAAGAGGA AGGGAAGGTTGGACCAATTGTTTGGATCTGAAAAATCCTAAAAGGCAAACGATAGAAAAATAAGGATAAAGGATAATTTT TTGGTATCTTTATTATAGAAACTGGGAAATAAAAGATAAACAAGAACTTAGAGGCTGTTACTTCATGGCAGAGGTGATCC TTCATGCAAGAACTTGGTGGCTAGTATTATGTTGTTAATACTGTAATAGTACTGTTATTTCATGCAAGATTGAAAGCTTG TATTTGTTCCTTTTAGAATATTATTTCATTAATTTGAGAAAAAAATCTGCTATCGTTGAATAGGAATATAGAACATTTTA TTTTGAACTGAAAAAAAGACTGCTAAGTTTCAACTTAATTTTCAGGAGAGTTTATTTTTTAAAATTTTTGCTGTTTTCTT TTCAGGAATGCTGTATATGCCTCTGTTCATATGAGGACGGAGTAGAGCTCCATGCTCTTCCCTGCAATCATCATTTCCAT GCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCCCTTTGCAAGTACAATATTCTCAAGGGAAACGAACA GGTATAA
CDS sequence (LotjaGi2g1v0072000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTGGAACATGGCGTTTGTGGTGGTATCAGCGGCGATGCTTGCCTGCACCGTCGGCGAGCAACCGAACACGCCGAT CCGGCTGTGGATTGTCGGCTACGCGCTGCAGTGCCTCTTGCATGTCGTGCTGGTGTGGTTCGAGTACCGGCGTCGGAGCC GGAGGGACTCGAGGCGGCGGCGGAGGCTGGTGGAGAGCGACGCCGGAAGTACTGACGGCAGCGACAGCGATGACGGCGAT GCGAACTCGGGAGGCAAAACTTGGAGGGGGAGATTCACAAAACGATGTGAAACAATAAATACTGGGGTTTCATTCATTTG GTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATGCTTATGCAGGATGCCCCACGGTTGTACTGGTTGGCTG TTGTTTTTCTGGCTTTTGATGTATTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGT TGCTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCTGGACAGGAAGGTGCTTCAGAAGCAGATCTTAGTATACTTCC GAAATACAGATTTCAAATACTAAACAATGAGGAAAAGCCTAGTGGTGGAGCCGGATCAATGGTTCCCACAGAAACCAGCA GTGCTTACTTGGCAAATGAAAGAACACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTTCATATGAGGACGGA GTAGAGCTCCATGCTCTTCCCTGCAATCATCATTTCCATGCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTG TCCCCTTTGCAAGTACAATATTCTCAAGGGAAACGAACAGGTATAA
Protein sequence (LotjaGi2g1v0072000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYRRRSRRDSRRRRRLVESDAGSTDGSDSDDGD ANSGGKTWRGRFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCC CLPCIIAILYAVAGQEGASEADLSILPKYRFQILNNEEKPSGGAGSMVPTETSSAYLANERTLLPEDAECCICLCSYEDG VELHALPCNHHFHASCIVKWLKMNATCPLCKYNILKGNEQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 281 | 281 | 3.6E-155 | – | |
| PANTHER | 1 | 281 | 281 | 3.6E-155 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 20 | 4 | - | – | |
| Phobius | 21 | 29 | 9 | - | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 30 | 49 | 20 | - | – | |
| Phobius | 50 | 97 | 48 | - | – | |
| MobiDBLite | 65 | 84 | 20 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 98 | 116 | 19 | - | – | |
| Phobius | 117 | 127 | 11 | - | – | |
| Phobius | 128 | 146 | 19 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 147 | 152 | 6 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 153 | 173 | 21 | - | – | |
| Phobius | 174 | 281 | 108 | - | – | |
| Gene3D | 191 | 276 | 86 | 5.9E-19 | ||
| SUPERFAMILY | 218 | 275 | 58 | 5.05E-20 | – | |
| Pfam | 229 | 271 | 43 | 1.3E-12 | ||
| ProSiteProfiles | 230 | 271 | 42 | 12.416 | ||
| SMART | 230 | 270 | 41 | 1.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0072000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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