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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0081600 |
| Transcript ID | LotjaGi2g1v0081600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22249879..22254544) extracted from Lotus japonicus Gifu genome v1.2.
GGCGGTCATGGTCATCTCTTCAACAACATCACCGTCGGAGGCCGCGGCGGCACGGTCAGTTCTCTCTCTCTTCCCGTTTA CTCGAAAATACTGATTTCCGTCAAACCCCTAATTTTTTATCCTTCGATTTTGCTTTAAAAACTTCCATCAAAACCCTAAT TGAAAACTTGTATGGGTTTTGTTCTTTTTATGGGGTTGCAGAATCCAGGCCAGATAAAAATACATCCTGGAGGAATTGTA TGGAAAAGACAGGGGGGTGGTAAATCAATTGAGGTTGATAAAGCTGATATAATGGGGGTCACGTGGATGAAGGTTCCAAG GTCTAATCAACTTGGTGTTCAGATCAAAGATGGCTTGTTCTACAAGTTTACTGGATTTCGTGATCAGGTTAATCTTGTGC ATTTACTAATTCTGTTCCTTTTATTAACTCTTCAATAGATGTTAATATTGATTAGTTGGACTTGGATTGCTATTCAATTT TATAAATATTTTGCAGGATGTTGTAAGCTTGACCGATTTCTTCCAAAACATGTTTGGAATAGCTGTAGAGGAGAAGAAGC TTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATCTAAATGGTTGGTGATATTTCCATGAACTCACTTATGTCTTGCAA TATGCAACTGATATTATCTACATGATACACTGCATATATCTCATACATCTCCCTTTGTTATTCTTACTCGCTATACTTAA AAAAAAATTTGTTTGGGGATAAGAGTTTGACATCATGTTCTGTTTGATGTATCAGCATCATGAGGATATAGTATGTAAGC AAGGGAAAGATGTTTCTTATTTTTAAAGGAAGTCAGTTGATATCATTCAGTTTGTCTTTCGAGATTTCTTGTATAATGCA GGATGGCTTTAGTATGTGAAGAAATGGGGTGAATTTGCTGTTACTTCTTTTTAACCAATTTGAAGTTTGTTCTTTTCTTT TTGGTGTACTCTAGGTCCACAATAAATCTAAGCACCAATACCTCCAATTTGGTATGTACATGAAGTGAAACCTTAAAGTG AAAAAGTTAAGATCGGAAAGCGTTTTTCGTTTTGGGGGGCGGGGGGTGGCTTCTAAAACCGGAATTTCATCTTATTCTTG TTTTCATCTTTTGCGAATTAAGTTCAGTCTTTCCCTTTGTGGTGAAACGTTGTCTTTGATTGACTTCTTTTATACAGTCA TACTACCACTAGATATTCTTATGCTTCTAGTTCCATTTCAGGAAATATGCTTGGTTTCATGGTTGGTTCAAAGCAAGCTT TTGAGGTATCTTTAGCGGATGTCTCTCAAACACACCTTCAAGGGAAAAATGATGTGTTATTGGAGTTCCATGTGGATGAC ACAACTGGAGCTAATGAGGTATATCTGTATATTACATACACATAAAATCTTATATGTTTTAACAAATTCATACAGTTCCC TCACCCAAGCTTGGCTTGAACAGCAGGCTGCAGTTTATAGGTTCTATTTGGGTGTGCTTTTATTTATGGTCTAATATATT GTTCATGTTATGATCTCAGAAAGATTCATTGGTGGAGATAAGTTTCCACATACCAAATTCCAACACCCAGTATGTTGGTG ATGAAAATCATCCTCCTGCTCAGGTGAGTTTGCTCAAAACTTTTATAAGTTTCATGTTACAGTAATTAGTAACTTCCAGA CAACTGACGTTTGCACATTCTTTTTCGCTTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGGGG TGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACCCCAAGGTGATACCTTTCAAATAATTGTCTTGTATATT GATGGCTTGCTTTTCTGTCCTTCCAAGAAAAAAGATCAATCCCTATTAATGCGATTTTTTTTTTGTGCAGAGGACGTTAC AGTGTTGAGCTACACCTGTCATTCTTGCGACTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTATCGTTCG CATATTTTTACTTCCTAAGGTTTATTTGCAGATCATTTGTTTTCATTTCACTGATATTGTTTTCATATAATTTAGTGCAA TCACCAAACCATGTCTTATAGTTGATGCTTTTTTCTAGACTTGTTAAGTATACTGACAACTTCTCATCTCTACTGATTGT ATTTATCCGCAGTCTAATCAGCCACATACATTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTA CCCTCATATTGTGATGCAGGTAATTGCCTTCTGTTTAATTTTTAACAATTTCGGTGATACACTGATACGTATTTTGCTTG CTTCTGAACCTGACAATTTTTTCTCATTTTTGTATAGTTTGAAACTGATTTAGTTGAACAAAGTGAATTGGCAATAAATG AAGATCTTTATAACACCAAGTACAAGGACAAGTTGGAGCTTTCATATAAGGTATTTCTTAAACTGTTGATAACTGATTCA ACGATATGCTGCTTGTGTACAAAAAAACTTACTTTAGTTGATTGATGAATAAAAAATTTCCTAACTAGGGGTCTTGCATA GAAATGCAATTGCTGATATAAATCACTTACAATTCAATAATCAGGGTCTGATCCATGAAGTGTTCACCACAATATTACGC GGCTTGTCTGGGTCCAAAGTTACCAAGCCTGGAACATTTAGGAGTTGTCTACATGGTTATGCAGTGAAATCATCTTTGAA AGCGGAAGATGGAATTCTGTATCCCCTTGAGAAGGGCTTCTTTTTTCTACCTAAACCCCCCACTCTTATTCTTCATGATG AGGTAAAATCGAATTTTTTATTACTGATGGTCAGATATCGTCTAGCTACTTTTGACGTACAAAATTACATATAATGTTAT ACGTTGGAGGTTTTGATTTTTTTTTTTCATCCTTTCCTACTAGATTGACTATGTGGAATTTGAGCGGGGTGGTACAAATA TGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAGCAAGAGCATCTCTTCCGTAATATTCAGAGAAACGAATACGAC AATTTGTTAAGTTTTATAAGGTATATTAGCTCTTTGCCAAATTTTACATAGTTACAACTAATTGTTTGATTTAATTTGAT GAACAATTAATTGTTGTCCTGTGCACATAGGTCAAAGAGTTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTG GTATGGCTCAGGTTCTTGAGAATGATCATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGA GATGAAAGTGATGAGGAGGTACCCAAATCTGTATTTGATATAAATTTGTATTCTAATTTCAGTAATTGATGGGACAACGT TTATTTATATTTCCAAAAGTTTCTTAAAATATTTGGGCATGAGGAAAACATAACTTGGAATTCTCCTCACCTTACTATTG TTCCATTCTTCAACTTGCATTTATGCAGCTGAACTTTCTCCTGTTCATTGAGATATCCTCTAGTTTCTTGTATTGTTTGT TACTATCGTGTTAGTGCGCATTTACTGTATTCTGTTAATGTGGGTATGGCTCTTAAATCTTCATGTAAGTTGCCCCACCT CCCCTCTTTTTTCTATCGGTGCACCCAGTGTTGAGATTTTGAAGTCTTGGTTTGCTTCTACATTATTAATCATGGCAAAT GTCTACAGGATGAAGATTTTGTTGTTGACAAGGATGATGGTGGTTCTCCAACTGATGAGTCTGGTGGGGAAGATTCTGAT GCTAGTGATAGTGGTGATGAGAAAGAGGTGTATTTTGCTTTTATTTTCCTTCATTACCTTGTGATACAACCCCTGTACTC TTTAAATCATTGGTGTGCCAGCCTTACACCTTAATGACGGTCAATTTTCAGAAGCCTGCCAAAGTGGAACCAAAGAAGGT TCTGTCTTCTAAGGCATCCAACTCTAAGAGGAAATCAAAAGATGCTGATGAAGATGGAAAAAAGAAAAAACAGAAGAAAA AGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGGTGCGTTCTATGTTA TACATGTTGGCAATGTGATTTTGGGTTTTGTTGTGTGGGTTACTGGTGAGTGTATTCATCACTTCACTTCCGTATAGGTA TAGCTATTCTATGTGGCTAGGTTTGTAGGGAAAATCTTTACGAGGCCAGGTTTTGGATAATCTGAGATCATCCGGCAAAC CTTTAGCTACTTTTTTTGATTGACTTTTCAAGTAGGTGTTACATAAATTGAGTTCTCCTTACATATTATTATTATTTTTT TCAAATGACAGAATCTGAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGGAGAGTACTTGGAGAGAAATGGAAG AAGATATCAGGTATGGTTTATTGCATGCTGTTTCATTTCATGCAGTTCCAGTGAGAGTCATTATTCTTTCATGATCAGCT CAGAGTTTATTATGTGCTGTGACTAAGTTTTGTATTTCTTTGCGTGTTGATTGCACAGCGGAGGATAAAGAGCCATATGA GGCAAAAGCCCGTGCTGATAGGAAACGTTACATGGATGAGATTAGTGGCTACAAGAATCCACAACCCATGAATGTTGATT CAGGAAATGAATCTGACAGTGCCTAA
CDS sequence (LotjaGi2g1v0081600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTCACGTGGATGAAGGTTCCAAGGTCTAATCAACTTGGTGTTCAGATCAAAGATGGCTTGTTCTACAAGTTTAC TGGATTTCGTGATCAGGATGTTGTAAGCTTGACCGATTTCTTCCAAAACATGTTTGGAATAGCTGTAGAGGAGAAGAAGC TTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTTGGTTTCATGGTTGGTTCAAAGCAAGCT TTTGAGGTATCTTTAGCGGATGTCTCTCAAACACACCTTCAAGGGAAAAATGATGTGTTATTGGAGTTCCATGTGGATGA CACAACTGGAGCTAATGAGAAAGATTCATTGGTGGAGATAAGTTTCCACATACCAAATTCCAACACCCAGTATGTTGGTG ATGAAAATCATCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGGGGTGAAGATGCT GTTGTTACATTTGAGGGTATTGCAATCCTTACCCCAAGAGGACGTTACAGTGTTGAGCTACACCTGTCATTCTTGCGACT TCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTATCGTTCGCATATTTTTACTTCCTAAGTCTAATCAGCCAC ATACATTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAA ACTGATTTAGTTGAACAAAGTGAATTGGCAATAAATGAAGATCTTTATAACACCAAGTACAAGGACAAGTTGGAGCTTTC ATATAAGGGTCTGATCCATGAAGTGTTCACCACAATATTACGCGGCTTGTCTGGGTCCAAAGTTACCAAGCCTGGAACAT TTAGGAGTTGTCTACATGGTTATGCAGTGAAATCATCTTTGAAAGCGGAAGATGGAATTCTGTATCCCCTTGAGAAGGGC TTCTTTTTTCTACCTAAACCCCCCACTCTTATTCTTCATGATGAGATTGACTATGTGGAATTTGAGCGGGGTGGTACAAA TATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAGCAAGAGCATCTCTTCCGTAATATTCAGAGAAACGAATACG ACAATTTGTTAAGTTTTATAAGGTCAAAGAGTTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGTATGGCT CAGGTTCTTGAGAATGATCATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAG TGATGAGGAGGATGAAGATTTTGTTGTTGACAAGGATGATGGTGGTTCTCCAACTGATGAGTCTGGTGGGGAAGATTCTG ATGCTAGTGATAGTGGTGATGAGAAAGAGATGGAAAAAAGAAAAAACAGAAGAAAAAGGACCCAAATGCACCCAAGAGGG CAATGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTGA
Protein sequence (LotjaGi2g1v0081600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVTWMKVPRSNQLGVQIKDGLFYKFTGFRDQDVVSLTDFFQNMFGIAVEEKKLSVSGRNWGEVDLNGNMLGFMVGSKQA FEVSLADVSQTHLQGKNDVLLEFHVDDTTGANEKDSLVEISFHIPNSNTQYVGDENHPPAQVFRDKIMSMADVGAGGEDA VVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSIVRIFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFE TDLVEQSELAINEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGSKVTKPGTFRSCLHGYAVKSSLKAEDGILYPLEKG FFFLPKPPTLILHDEIDYVEFERGGTNMHYFDLLIRLKSEQEHLFRNIQRNEYDNLLSFIRSKSLKIMNLGGAQPTVGMA QVLENDHDDAVDPHLERIKNEAGGDESDEEDEDFVVDKDDGGSPTDESGGEDSDASDSGDEKEMEKRKNRRKRTQMHPRG QCLVSCSFLKWKERI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 473 | 472 | 1.2E-240 | – | |
| PANTHER | 2 | 473 | 472 | 1.2E-240 | – | |
| Pfam | 3 | 50 | 48 | 1.3E-9 | ||
| Gene3D | 47 | 132 | 86 | 3.8E-22 | ||
| Pfam | 58 | 126 | 69 | 1.5E-24 | ||
| Gene3D | 151 | 290 | 140 | 1.1E-50 | – | |
| SUPERFAMILY | 158 | 389 | 232 | 1.16E-73 | – | |
| CDD | 159 | 292 | 134 | 1.04593E-67 | – | |
| PRINTS | 171 | 187 | 17 | 4.3E-68 | ||
| PRINTS | 193 | 209 | 17 | 4.3E-68 | ||
| PRINTS | 216 | 232 | 17 | 4.3E-68 | ||
| PRINTS | 281 | 294 | 14 | 4.3E-68 | ||
| Gene3D | 291 | 392 | 102 | 3.1E-35 | ||
| CDD | 294 | 390 | 97 | 1.07416E-39 | – | |
| SMART | 300 | 390 | 91 | 1.9E-32 | ||
| Pfam | 302 | 388 | 87 | 1.2E-21 | ||
| PRINTS | 308 | 326 | 19 | 4.3E-68 | ||
| PRINTS | 326 | 343 | 18 | 4.3E-68 | ||
| PRINTS | 349 | 365 | 17 | 4.3E-68 | ||
| PRINTS | 365 | 383 | 19 | 4.3E-68 | ||
| MobiDBLite | 417 | 479 | 63 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0081600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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