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LotjaGi2g1v0119900.5

Overview

Field Value
Gene ID LotjaGi2g1v0119900
Transcript ID LotjaGi2g1v0119900.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description mRNA decapping protein 2; TAIR: AT5G13570.1 decapping 2; Swiss-Prot: sp|Q8GW31|DCP2_ARATH mRNA-decapping enzyme subunit 2; TrEMBL-Plants: tr|C6TF29|C6TF29_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0119900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:44192663..44197399) extracted from Lotus japonicus Gifu genome v1.2.

CTCATGGCTGCGGACCGACTGTGGGAAAACCTTGGGGAACCAAAAAAGCCATTTTCATTAACTTTCTTCCCACAATTTGT CTTTATAATTGTGTCTTCCTATGTTTTTGTTGTTTTTCTCATATAAGGCTTTTTTTTTGTTTATGTTGCAGCCGATTTGT GCTGAATGTGCCGAAGGAAGACCTTCAATCATTTGAAAGGATCTTGTTTCTCGTGGAGTATGCACATTGGTTTTATGAGG ATAATTCTGTAGAAAATAATCCATCTCTGAAGTCGTTAAATCTGAAGGAGTTTACATCTTTATGTATCCTTACTACTGCT TTCTTTGTTTTCATTCCTGTATTTAACATGGCAGAAGTTTTTTTTCTCTTATTACTTTTGACTATAATAATTCATCAGCA ATCCTTTCATGCACTGGGTTCTTTCTTACTTTTCATCTAAAAGGGAAAATAACTTTTTTGTGGCCTAGTTTGGAGGTGAG ATGAAAGAATGTGAGCAGAAGGACATGGATTATCCATCGAAATTTGTTCCCAAGATTGAAATCTTTAATTTGGTTAGAAT TTTGGTTGCTCCTCAAAATTTACGTGTTCTGTTCTTCTCTATCTCTTGTAATATATGAACCAAAACTTTGTAAACCAATC TAAATTATTCTCTTTTATTTTCTCTAATGTTCTAGCATGGAGAATTTTCTGCATGATATGGCTCAAACAAATGTAGGCAG GCACCTATCTGCATCTGGAATTCCCTGTCCCCTCCTCATCTCATTTTTTTCTTAATAAAATCCAACAAGTTGTTGTTTAT GGGTTCATCAATTTGGTTGGGTTTATGCTCAGCCGTGCTCACATGCTTGCTTGTACACAAATGAAATTGATATAAAAGGC ACATCTGTCTATGCTTTACGTAAAAAGTGCTAGTAGTCAATGCAGTTTAGTTTTATTGTCATACTGTCTCTATTCTGATC ATCTTATAATCAGACATTATTTTCCTTAATATTTAGCAGTGTTCAATAGTTGTGATGTTTTGAAGCCTTATGTGGCCCAT ATAGATGACATCTTTAAGGACTTCACTTCCTACAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACCTA TGAAAGGGTAAGCCTTAAAATATAGGCTCTTGGCAGTACTTAAGACAGACCTATTTATTCACCTTCTTTTCTAATGCCAG TGGGCTTACACTTTATGGTATAACCATGACCCTGAATCAATTTGCATCCTAGAATATGTTGGTTTGTTCTCAGAAAATTT TCAATTCATTATGCTGTTTGGTTAATTATTACTATGATGAGTTTGTAGGTTGCATGTGTTTAAAATCTCTCTTGTAAATT CCAAATTATCTATGTTTTGTATTGGCTCTTAGGAGGATTGATGCTGTCAATTGATGGCTATTCAACTATTCAAGTAATTA GGGAAAATGTCAAAGGTAAACTCTGAACACTTATGTCAGAGTGGTGATGAAGGATGAAAAAAGCCATAAACTTGTCTAAT TTACATGTTGGCTAAATATTTTTGGATCTCCTAGATATGGAAGATGAAATATTCCTTTGTCACAATATATACTATACATG CAGTCAATTCTTGACTTGGTTATGCATATTTTTTTCATTACTCAACTTGGTGAGCTTGTAGTGAAAAACAAGGCATAGTA AGGTGATAGGAAAAAACCCCCATGGGTCCATGTTACTGCAGTTTAGAGCAAATTAGTGGGTTAGAAACTGTTGGGGTAGT TATTGGGTTAGTTATTATTAGTTAGTTACATCAGTTTATGTTAGTTATGTTCTACCAAAAATTGCCTAGGGGTGGTTATT AAATTTCTGGTTATTAAATAGGAGTTGTGGCTGTTAGTTTAGACATTCAGAAATTCATAAGTGATTTAGTAGGGAGAGAA CTGGCTCTCGAATTCCAGAACTAGGAGAGGCTGGCTCTCTAAAACCAGTGCTTGTATAATTATTCAGTAATTCCAATCAG TTCCTATCATAAGGCCATTAATAAGCCATCATGTAACATCTAAGCTTTAGGATGGTTGGTCCATGGCATGGTCTAAAATC GTCTTTGCGGAGGTGGTCAAGATTCACCCCCAATCTTATAATGAAAAATTGAGTTTCAGGCACAGGTTACAAGGACTTGT TCCTTGTTCACCCTTCAAGTGCAAATGACTCTTGCATGATGAACTCCCAATGCAGCAAATAATTGTTAACTAATTTCGAG TTAAATCATTACATAATGCAACCTGTCATCATGAAACATGATTTATTCTGTCTGCCACCAAAATTTAAATCATTGCATAG TGTGTCGTTCGCATTTTCTGCATTTACTATCCTGTCTGCCATGTATGGCGGCATAAGAAGCTTTATTTTTAGCAGTCAAT GGTCCCACACAGCTCGCCCAACACTTCTCTTTTGGATCTGGTTTTATATCTAGCATTTTCCCCTTGTGTAGAAGTTTCCT TTTGTGAAGAGGGGTTTCTGGTGACTGTCTTAGTTTTCTCCAGCCTGTTCTTCCTTTTCTCAGGCTGCCACTTTTCCATC TCCTTCAGTTTGTTCTTGTTCAGTAATCTGCTGAACGCAAGGTTTGTTTTTTTCTCTTCCAAATTCCAATGGCTGTTTGG AGCCCTTTTTCTCTCTGATGACTTCTTCGCCACCTTCTGTAGCACTGCATTTGCCCTTTGTGGCTAATGACCCATGGCTT CAGAACCTCCTGTAAATGGACGCCTATGTTGATCTCTTAAAGTGGTTTGAGGTGTGTTAGGCCTCAGGTTCCACTGTCTC TGTTGCACAAATTGGTAATATCTTTGCTTGTATTTCCCAGTCATCCTATGTTGGTCCATTGTTTCTGAATTCTAGTGCCA CTAATAACATCTTTGGTGATAAATCCTTACTCTCAACTTTCTACCTTGGTTATTTGCTCACATTTACCTTGACTGGTGCT TCCCAAACATAGTCCAAAGAGTTAAGGTACATCCTCTTTCCTCCTTGTCTGGGGATTCAATATAATATGTTCTAGGTTCC TTGTTTAATTTACTTACTGGTAGCTGCTTGACTTGCTCCCTTGACTGTGTCATCTCTTCCACTAAAGATTTTGTTTTCCA TTAGGGCTAAGTTTGGGTTCGTATGTGAGTCCAGTGGCCTCTACTAACTCCCGAATCCATTCCTGCATTTGGATTGCGGG TTGCCTCAGATTCACCTCTCCCAATAGATGTTCATTTAGAGGTGTCAAGGAATATGAAGAAGTAAAGGCTACTTATGTCT TTATGTAACTTTAGTATTACTATGAATAGTTAATTAGGGTGCAGTTATGTGTGATCTTTATTATGGGCTGGAGAAATATT CTTCTCCACAGAACCTCTTCTCTTTTTCCTTGAAGTCCTAATGTTTCTCAACAGGTGGGGTGTTAAGTAATTCAATTATA AATCGAAATATACATTAGTTCCTTAAGAAAAGCATATGAATTTTATCAGAGAAGGCATTACTTAGTTTGTAACTTGCTAT CTAAAGTTGTCACCTTTTGTCAAAGAGAGTGTCATTCATATATTTAAGCTTATGTGTACTACCCTTAGACATCAACATCT GTTGGTTCAGTAAAATAATTTTCCAATGCAGCTGTTGGGACCGAAATAGTTCTATCAGTATTTATTGTCTGCTAAGCTGT AGTTACTTCCATGTCTGCTGTTGACAGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGAGGAAA AAAGAGCAAAGATGAAGAAGATCATGCATGTGCCGTAAGAGAAGTAAGCATGATAATTTGGAGTTGTCACTTTCTCAGTA TCATCATAAATGACTCTGTCCATGTTCTTTGGTCTCTTGAAAATAGTTACCCATTTATAGCAAAATTGAAATATATTGAA AGAAAATAACTAAAAATAATGTACGTTGTATCTCACTAGGAATCTTGCCTTAGTTTTTCCATGTTTTTTGTTTGTGGTGA GTGCAGGTCTTGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTTAACAAGGATGAATACCTTGAAGTTATTTTTGGGCA ACAGAGAGTGCGGCTTTATATTATTGCTGGTGTGAAAGATGATACAGCATTTGCCCCACTTACCAAAAAGGAGATAAGTG TATGTGATTCTTTTTAAGAATTTACTTTTAAAGTTCCTATCCTATGTGCTTTTAAGTTTTTGGAGTCATCACTAATACCT CTAGTAGTAGTTAAGATAAGATAAGAATTTCCATTGAGAAAGGAAAAGTAGTAGTTTAGGTGAAGAGCATGCTGAGAAAT TATGTGTTGTGTTGTGATATCTGTGCAGGAAATTGCATGGCAGCGCCTTGATGAACTTCAACCAGCGGGTGATGAAGTGA TATCTCGGGGGAGCACTGGACTTAAGCTTTACATGGTGGCCCCTTTTCTGGCGTGAGTACAACCTCTATGGTTTTGATAG TTTTGGTGAATGTTTCCCATGTGTTGTCAAAGTTCAAAATGATTCACTGCCTTATAACAGATCATTGAAATCGTGGATTT CAACACACCCACCTCCTATGGCTCCAAGGCATGATTTGCCTCTTAAAGGTAAGTCCACTTTTAATACAAATGCTGGTCAG CTGCAAACATTATTTGAGATATTAAATGTTGGAGTTATAGGGTTTTAGAGAAGGAATGATGAAAGAAAAAAAATAAGACA TACTATTATTATTATAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0119900.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCGGACCGACTGTGGGAAAACCTTGGGGAACCAAAAAAGCTTTTTTTTTGTTTATGTTGCAGCCGATTTGTGCT GAATGTGCCGAAGGAAGACCTTCAATCATTTGAAAGGATCTTGTTTCTCGTGGAGTATGCACATTGGTTTTATGAGGATA ATTCTGTAGAAAATAATCCATCTCTGAAGTCGTTAAATCTGAAGGAGTTTACATCTTTATTGTTCAATAGTTGTGATGTT TTGAAGCCTTATGTGGCCCATATAGATGACATCTTTAAGGACTTCACTTCCTACAAGGTTCGAGTTCCTGTAACTGGGGC AATAATTCTTGATGAAACCTATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGAGGAA AAAAGAGCAAAGATGAAGAAGATCATGCATGTGCCGTAAGAGAAGTCTTGGAAGAAACAGGTTTTGATGTTTCAAAACTT CTTAACAAGGATGAATACCTTGAAGTTATTTTTGGGCAACAGAGAGTGCGGCTTTATATTATTGCTGGTGTGAAAGATGA TACAGCATTTGCCCCACTTACCAAAAAGGAGATAAGTGAAATTGCATGGCAGCGCCTTGATGAACTTCAACCAGCGGGTG ATGAAGTGATATCTCGGGGGAGCACTGGACTTAAGCTTTACATGGTGGCCCCTTTTCTGGCATCATTGAAATCGTGGATT TCAACACACCCACCTCCTATGGCTCCAAGGCATGATTTGCCTCTTAAAGATATTAAATGTTGGAGTTATAGGGTTTTAGA GAAGGAATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0119900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAADRLWENLGEPKKLFFCLCCSRFVLNVPKEDLQSFERILFLVEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDV LKPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGTSWSFPRGKKSKDEEDHACAVREVLEETGFDVSKL LNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWQRLDELQPAGDEVISRGSTGLKLYMVAPFLASLKSWI STHPPPMAPRHDLPLKDIKCWSYRVLEKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23114
21 252 232 6.4E-114 –
SUPERFAMILY
SSF140586
21 99 79 1.19E-28
IPR036189
SMART
SM01125
21 99 79 4.4E-37
IPR007722
Pfam
PF05026
21 98 78 7.7E-26
IPR007722
PANTHER
PTHR23114:SF17
21 252 232 6.4E-114 –
Gene3D
G3DSA:1.10.10.1050
21 100 80 4.3E-84
IPR036189
ProSiteProfiles
PS51462
100 230 131 13.382
IPR000086
Gene3D
G3DSA:3.90.79.10
101 241 141 4.3E-84 –
Pfam
PF00293
102 213 112 1.7E-14
IPR000086
CDD
cd03672
102 243 142 3.18737E-73 –
SUPERFAMILY
SSF55811
102 213 112 4.33E-22
IPR015797
ProSitePatterns
PS00893
133 154 22 -
IPR020084

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030145
Molecular function Manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0119900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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