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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0141300 |
| Transcript ID | LotjaGi2g1v0141300.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cleavage and polyadenylation specificity factor subunit 2; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr|A0A1J7HZX4|A0A1J7HZX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:51446214..51448418) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAACATCAGTGCAGGTAAAGCCACTGTGTGGAGTGTACAACGAGAACCCTCTCTCGTACTTGGTCTCCATTGATGG CTTCAACTTCCTCATCGACTGTGGTTGGAACGACCACTTCGACCCTTCCCTTCTTCAACCCCTCTCCAGGTTTCTTTCTT TCTTTCCTTTTCCCCAAATGGGTGTCTTGTATTTCAACCCCCCTTGTTTAAGTTTCATAGGGTCACAATATGATGTGATT TTGAGCTTCAAAGTGTTGGTTAGTAACAAATTGGGGTTTGTAATGTGGAAGACAATGCTTGTGAACTAGAAAGAAGGATT TTTTTCTTTTTTCTTTTTGTTGTTATAAATGACATTTGGAGCTTGAAAATATTGAATTTTTCATGTGGGGCATCTTGTAT TTCAAACCCCTCCTTGTTTCCCTTTCATAGAGTCACAATATGATGTGATTTTGAGCTCCAAAGTGTTGGTTAGTAACAAA TTGGGTTTTTTAATGTGGAAGGCAAAGGCAATGCTTATGAACTAGAAAAAATAACATTTTCCAGTTATAAATGTCACTGG GATTGATTTTTCAGAATGTTTGTATTCAATTATTATGTTTTGATTTGTTATTGATGTTGTGTGCTTTTTGGCATGTAGGG TAGCATCAACTATAGATGCTGTCTTGCTTTCGCACCCGGATACGCTTCACCTTGGTGCCCTCCCATATGCTATGAAGCAG CTTGGACTCTCTGCGCCTGTTTTTTCAACTGAGCCTGTCTACAGATTGGGCCTTCTCACTATGTATGACCAGTTCCTCTC AAGAAAGGTGAAATTTCATGCCAGATTTTTGGTTTGTTTGTTTTTACTATTAAGAGAAAGATGTTTTTCTGCTTGGTTTT TAGGCTGTTCGGTATCTTGTGTCCTTATCTGTGAGCTTTCCTATTTAACAATTAACTAGGACTAGGACAATACATATGTT TTAAAGCCAAATGGTTGGGTTAAGCTATCTTATTCTCTTGCAGCAAGTGTCGGAGTTTGATCTGTTCACGCTAGATGATA TTGATTCTGCTTTCCAAAGTGTAACAAGGCTAACATACTCTCAGAATCATCATCTCTCAGGTAGGGATTGAGACATTTGT TAGAATGTGTTGCGTTGAAGTGGTTGTATGCCTTCTCTTTGTTCTCTCCCCCCACCCTCTTTCAGTGTATAAATATTGGT TTGTTTCTAAGCCCTTATGCTTTATAAATTTATAATAAAATGAAATTCTCTACTTCCATGTTGCACACTTCCAAATATTC AGCAGCGTTGTTTATTTGTCACCTTTAATGGCATTTTAACTGCTGCTAGGCAAGGGAGAGGGAATTGTGATTGCACCTCA TGTTGCTGGGCATCTTTTGGGAGGTACGATATGGAAAATTACAAAGGATGGTGAGGACGTCATATATGCTGTTGATTTTA ATCATCGGAAAGAAAGGTAAATCTTTCTTTTTGTTTTCCACAGTTAAATTGATCCTATATATCTTTAGAGAGTTAAAAGG AAGCTACTTATCTACCTAATTTTCATTAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGCGGCCAGCAGTTCTAAT AACTGATGCTTATAATGCTTTGAACAATCAGCCTTACAGACGCCAAAAGGACAAAGAATTTGGAGGTAACTAACTTTTAA ATCCAACAACTGTGGCACTGCGACAGAACATAAAATTTTGTTTTCTCAAACTGCTCTTAAGAGGCGGAAATGTTTTTAGG CCCAGGACATTGACAGTGGACTAAAAAATCTTACCATGAAATGAAGAAAACTGTCTAGTATTTGTGTGCTTTATCTATGC TGATCATGTATCTTGTTGATTATTTAGATATCTTAAAGAAGACTCTTAGGTCAGGTGGCAATGTATTGCTCCCTATTGAC ACTGCAGGACGGGTGTTGGAACTTATTCTGATGCTAGAATCGGTCAGTACAGGAAATATGCTTTTACTCTTTTTCTCCCC CTTTTCCTGAATGTACATGTGAGTTAATGTGAGATCTTGGTTTTTGCAGTATTGGGCTGAAGAAAACTTGGTCTACCCCA TATATTTTCTTTCATATGTTTCATCCAGCACAATTGATTATGTAAAGAGTTTCCTTGAGTGGATGAGTGATACCATTGCA AAGTCTTTTGAACAAACGCGTGAAAATATATTTCTTTTGAAGTAA
CDS sequence (LotjaGi2g1v0141300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACATCAGTGCAGGTAAAGCCACTGTGTGGAGTGTACAACGAGAACCCTCTCTCGTACTTGGTCTCCATTGATGG CTTCAACTTCCTCATCGACTGTGGTTGGAACGACCACTTCGACCCTTCCCTTCTTCAACCCCTCTCCAGGGTAGCATCAA CTATAGATGCTGTCTTGCTTTCGCACCCGGATACGCTTCACCTTGGTGCCCTCCCATATGCTATGAAGCAGCTTGGACTC TCTGCGCCTGTTTTTTCAACTGAGCCTGTCTACAGATTGGGCCTTCTCACTATGTATGACCAGTTCCTCTCAAGAAAGCA AGTGTCGGAGTTTGATCTGTTCACGCTAGATGATATTGATTCTGCTTTCCAAAGTGTAACAAGGCTAACATACTCTCAGA ATCATCATCTCTCAGGCAAGGGAGAGGGAATTGTGATTGCACCTCATGTTGCTGGGCATCTTTTGGGAGGTACGATATGG AAAATTACAAAGGATGGTGAGGACGTCATATATGCTGTTGATTTTAATCATCGGAAAGAAAGGCATTTGAATGGAACTGT TCTAGGTTCTTTTGTGCGGCCAGCAGTTCTAATAACTGATGCTTATAATGCTTTGAACAATCAGCCTTACAGACGCCAAA AGGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTTAGGTCAGGTGGCAATGTATTGCTCCCTATTGACACTGCAGGA CGGGTGTTGGAACTTATTCTGATGCTAGAATCGTATTGGGCTGAAGAAAACTTGGTCTACCCCATATATTTTCTTTCATA TGTTTCATCCAGCACAATTGATTATGTAAAGAGTTTCCTTGAGTGGATGAGTGATACCATTGCAAAGTCTTTTGAACAAA CGCGTGAAAATATATTTCTTTTGAAGTAA
Protein sequence (LotjaGi2g1v0141300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTSVQVKPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTIDAVLLSHPDTLHLGALPYAMKQLGL SAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIW KITKDGEDVIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRSGGNVLLPIDTAG RVLELILMLESYWAEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 302 | 302 | 4.6E-154 | ||
| SUPERFAMILY | 5 | 301 | 297 | 4.98E-100 | ||
| Gene3D | 7 | 254 | 248 | 1.4E-77 | ||
| CDD | 9 | 203 | 195 | 2.29365E-115 | ||
| Pfam | 22 | 188 | 167 | 1.9E-56 | ||
| Pfam | 242 | 292 | 51 | 4.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | MRNA cleavage and polyadenylation specificity factor complex | A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal. | ||
| Biological process | MRNA polyadenylation | The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript. | ||
| Biological process | MRNA cleavage | Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner. |
Expression pattern of LotjaGi2g1v0141300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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