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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0167700 |
| Transcript ID | LotjaGi2g1v0167700.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase DeaD; TAIR: AT5G60990.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10; TrEMBL-Plants: tr|K7KC67|K7KC67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57879254..57886055) extracted from Lotus japonicus Gifu genome v1.2.
CACAAGAAATTAAGAAAACCCCACGCATATCTCCGTCGCGCCGCTCCAATACCTATATAGAACCAGCATCAAGGAAGTTA CCCATTCCTTTCCCGCCGCGCCATCTCGAAAGCTCCACTGCTAGCCGCCGCTTCGCCTCTCTTCTCCGGCCGCCTTTTCC TGCCGCCACCGGACCTCAGAGCTCACCGGCTCACGGAGTGAAGAGTGAAGAAACTGCACTGTAGGTGAATCAAAGCAAGG TATGCTTTAGGGTTTATGCTATTCTCTGTTTGTTAGGGTTTCCAATTTGCTAACACAGTTTACTAACTTCGTATGCATAG TTCTCTACTTTCATTGTTCGTGTCTTCTGCATTTTTTTTGTTTATTTGCAAGTATATTCACTTGGTATGTGAGCTTTGCA ATTCCTCTTCACAGGTTAGAAACCGAGAATGGAAGAAGAGAACGAAATCGAAGTGTCGAAATCGTTTAAGGATTTGGGTT TGCCCGATTCATTGGTAGAAGCTTGTGAAAAATTGGGTTGGACAACCCCATTGAAGATACAGGCAGAAGCCATTCCTCTT GCGCTGCAAGGTTAATTCTTATCTCTGCGGTTTTCAAGTAGAATTTTATTTGTCAAATAGAAACAGATAGATAGAGAGAA AGGTTGCATAATTATAATGATTGTTATATGACCTTGATGATTAGTGGATACAACAACAACAACAAAAGCCGTATCCCGAA AATCACAAAACCCAAAACCCAATAATTATGAGGGACTTGATGAATATTGGATATTGGGCATTATTTTTTTATATTGTTCT AGTTCATTGCATTAATATTTTACTACATCAGTTCTGGAGGGTTGCATGATATTAATGGTGCTTAAACTCTACTAAATTGT TGGTTATTCTTTGTGGTTTTGTGTTTTCACAGGAAAGGATGTCATTGGACTTGCTCAAACAGGTTCTGGTAAGACTGGAG CTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCTCGCCCGAATCATTTCTTTGCTTGTGTGATGTCTCCCACA AGGTTTGATACTCTAATAATTATCATGATTTGATTTTCATATAATTCAAGTTCTACTGAAAGTGAATGTTTTGACTGATA TGTAACTAGTATTTTCCTTCTGTTTTTCACCATTTTCTTTGATCTAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGA AGCTCTAGGTTCTGAAATTGGTGTCAAGTGCGCTGTGGTGAGTTCTAATTTGCTTTTTGGACTTCTTTAAGCATGACGGC TTCCTTTTTACTGCATAGCTTAAAGTTTGTTCTGTTTGACATTTTTTTCTATAGCTAGTTGGCGGGATAGACATGGTACA GCAATCAATCAAGATAGCTAAGCAACCTCATATTATTGTAAGTGTTACAATTGTTGTAGCCATGCTTTGAATTCACTTTA TTGACGTACATCAGGAGTTATTGGGGACTTGGGGTAATGATTGATTGATATCCAAAATATATTCTTGCATATGTGGAATT GTGGATAAGACATTTACCTATGTTTTGCTGAGGAAATGCAGTATTTTTTTCTGTGTTTATTTTTACTTATATCAAAGTCA TACTCTTGCAGGTTGGGACGCCTGGACGAGTTTTAGATCACCTAAAAAACACCAAAGGATTTTCTTTTTCTCGACTAAAA TACTTGGTAAGATTTCTACATTGCTTTGATTTAAGTTCAGGTTTTAGTATTCATGTTAGTTTAATGCTTTATTCTAGTCT TATTGGTTTTTTCTTGATGCATTTTGGTGAATGTTTTTAAATGGTTATGAATACTATTGTTTTGCAGCAAAACTGAAAAT TTCTCATGTTGAGCCGGATTTACTTTAATTAATTAAATAATAATTTTCATGTGAAATGAAAGGCATGTGGCTAGATTTAC TATGCTTCAATTTACATTAGTGATGGAAAATTTTACTGTTTGTCCGGATACAATTTGTGGATTGAGACAAACGTATGACA AATTTCAGTTCCATTGGAACAGAATTTTGCTGTGTACCTGACTCCTATTATGACCAGACTTGGATGATTGGTTGATGAGG CAAAATACAACCGTTTTTAAACATAATTATTACTTTCACACTAAATAACAATTTTTTTCGTCGAACCAAACATGAGGACA ATTCTATTGCCTTTAAATGCCCTCCTCAACTTTTCTGATCTCTATAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCCTCTCTCCCCGTATTTGTGTGTTCCAAAAAAGCATAGTTTAAGTTTAGTTCACTTTATGCATAATCTT CCCACTCAGTTTTCTTTTTTCCATGGTAAGTTTGATCTGCCTATTTTGTTTCATTGAAGAAGTCTTCACTAGTCATTGTT TGTAGTCAATATATTTAGAACTGTGACTGAGAATTCGTTGTTCATGTAGCTAAACTGTGACATTTATTTGATTGGAGAAT TTGATTATTTGAATATGGTTTTTTAATTGATGTTAGTTTGATTTATTGTTGAGACATGCATGTTTCTGCTTTGGTTTAAG TATATCTTACACGGTTATGCAGTTATGTATAAAGCTAATTAACTGCTGATTTGAACATGTCATTTCGTTGTAGGACACCT TGTGTTCTGCATTGATGGATGCTTGGACTTGTTTGTAGATTTTACAAATAGATATATTTAAATAATCTATTTTGCTGTCT ACCATGACACGTGCCCATCCTCATATTCAGAACATACATATAATCAGACTAGCCTGACTACTGAGTTTTGAGCAGGTTTT GGATGAAGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAGCGATTCCACGTGAGCGGA GAACATTTCTATTTTCTGCTACTATGACTAAGAAGGTATATATGAAGGTTTATTAATTACTGCATACTTACTAAATATAT TATTTATTTTTGACATTTTTTTGTTCTTGGCATTGGCCATATATGATTTCTAAGTAAGCAAGTGAAGTCCTTTTTGTACA TATTCTAAGATATGGAACCTATTGGATATAGGCCCTTTGAAAAATCTTGTAAGGTTATAGCATAAGATCTGGTTGTTGGA ACTTGGTTTATATCTTTTTATTTTTAAATAGATTTAAAAAAACATTCAATCATATGATTTTAGGCCTAATATCTTATATT TTGACATGAAAACATACAGTTGCTCCATTGAGAACTGTTGAAATGATATATTGATAATGAACAAAATGGTTTTTGTGTGC TGCTTATACACTTCAGATACTTGATTGTTTACTTGTAGTCTTGTACTCATTTATAATTTTATGTTGCTAATAGAGCAAGT TGCACTCTTGCTGTTGCAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGGTACATCTGTAATGTCTAA ATACCCTTTACTTGAGTGATGTTTAAATTATACCGCCTTCCCCTCTATTTCAAAATTTATTCTCCCTTCCGCTTAAAGAT TTTATTCGTTACACTTTTGTCTATTTTAATAATTTAATGTGAACAAGCTTCTTAGCTCTCTCTCCCTCCTCTGTCCCTCC CTCTCTATGTGATTTTTAGTGTCAAGGGCAGCTAGTACCTCTACTAGACATGAAAAGAAATGAAAACTTCGGGAGAAGTT TGAAAGTTGATATTAAATGGCTCTCAAATTCATGTCATCTTTTGAAATCCTGAAGTGAATAATAATAGGGTGTGGAAAAT TAGCTGCAGATGATACTCAAAGCTGCACAAAAAGGGAAAAAGGATGTCCTTGAGTGCACAGTATCTCACCACCACTAAGT GTGTTTGGATGCCAGTTGAGTTAGTGTGAAGGAAAATTCTCGATCCATAAGAATTGTTATGTTCACTTTTTGTCTCAAAG TGAGTGCTAACGGGTATCCGAACATAAGTGGTTCATTCACATTATAGTGCGGCATATTTATCTATTAGGAAGGGGAATGT AATTTTTAAAGTTAGAGGGGAAGACTGTATAGTTGAAGCATTTTTTAGAGGAGGGAAGTGTAATATATGTGTGTGTGTGT GTGTCTTCCTGATATTATTAACTATTTTTCTGTTTATTCAATTTAGATTGAAGCAGCATCTAAGTATTCCACTGTTGACA CATTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACACAAGGTTTCTGCTCTCTTGTTAAAAAATGTTGGATTTAAAAAA TGTCTTGGCTACATCATACATTGAATTTCTTACTACTCATGGGTTCTTGGCCCAATGAAGGCTGCGTAATTACTACTTTA CAAAATTATTTGAAATGTCATAGAATTACATTCCATTTTTTAAATGAAGCATATCATTGAAACGAAGTCTCTGTTATTTT GCCACAGCTAAGTTTTCAGTGAGGTCTTCAAAGATATAATGTTGTGAAAGAATTTCATGAAGTTGGCACCATTTTCCTTT TAAAACATCTGATATTTGCATCATGTTATTAGACTGTGTTTTAAACTTATAATAAATTTGCTATTTGGAATAGAATTAAC ACAAATTCATGCATTTTGGGTTTAATGAATCATGACTATTATCTTTCATGCTTGTGATGACAGCTTATTAATTGTTTGTC TTACAGGATTGTTACCTTGTATATATTCTCACTGAAATGGCTGAAAGTACGTCAATGGTGTTCACTCGGACATGCGATTC AACCCGGCTCCTGGCTTTGATTCTTAGGAATCTGGGTCTAAAAGCCATTCCAATTAATGGTCATATGAGCCAAGTAATTG TTCTAGAAATCTTGTATTGGAATTTGTTCTAAATTTGTCGTCTTTCCTTGGTATGGGAGGGTCCTATTGGGGGTGCAGGA AGTGATTGTCTCTGTCACCTTAATGATTGGTGTGTGCCAATGGAGCATCTCTAATTTTTATTTATAATCTTTTGACAGTC GAAGAGACTAGGAGCGTTGAATAAGTTCAAGTCGGGGGAGTGCAATATTCTCCTTTGTACTGATGTAGCTAGTAGAGGAC TGGATATTCCAACGGTCGATATGGTGATTAACTATGACATTCCCACAAACTCCAAAGTAAGATGTGCTATGATTTACTTT TATACATATATTGACATGTTTTATTACAATTATATTTAATCAAAAGTTTGCAGTTAAGTTAATGTAACTATAGGAATTTG TTAGTAATTTTATGGTTATACATGACTCAAGTACTTGGACTATGAAAGGAGATGAAAATTTTTAGAATTTTTTAGATTTA ATATTAACTGAATTCTGATGTTGTGAACTACAGGATTATATACATCGCGTTGGAAGAACTGCTCGTGCAGGGCGCTCTGG GGTTGCCATTTCCCTTGTGAATCAATATGAACTGGAGTGGTATATTCAAATAGAGAAGCTTATAGGTAAGTAGTACATGA TATGCTTTTTTTTGACATTAAGTAATGAAAGTTTCTCAATAAATAACAAATGCAAGTGTATTTCAGGCAAGAAGCTACCA GAGTATCCTGCCCAAGAAGTGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGAGGCCAAAAGATTAGCAATGATGGTAAG ACTTTTATTGAGCTCAGTTACATGTTAAACTATTTTTTCTGTCCATTTATTTTGTAGAGAAAAAATAAGTTGGGGAGGTT TGTGGGAAGTGGAAGTTTTTTTACCTACCTTATTTGAATTTCATTTTCATTGGGTACAATACAAGTAACGTGGTAATGAG GTTTCCAGTATTTTCTTAATCTAGTTTTTAAGTGCTAGCAAAATTATGATGGTTGAAAACAACTTTTTGCATATAAAGAT ACTCGAGCTTGTGATTATTTCTGAAATTAGTAAATTTTGATGAAACATTTGAAGTTGTTCAATCTTTATGCTCTTCAATT GTTTTTCTAAGTACTCATGTGTTTATTGTGTTTTTAATTGTTAAGAAAATGAAGGAAGCTGGAGGGAAGAAGAAACGAAG AGGAGGTGAAGATGATTTAGCTGAGGAGGATATTGACAAGTACTTGGGTCTCAAGGAAGGAAAATCATCCAAAAAGTTTA GAAGAAGATGAGATCATATCATTGCAGATTAGTGAATCACTAATAGGATGAATTAAAAAAAGCCATGAAAAGACTGATGT TCCGTACGACTTGTGATCCACTGGGTATCTATTTTTTGAAATTTCTTAGCTATCCTTTTTTAAGTGGTTCTATCATAAAT GGGTTTATTTATTTATTTTAGTGGATAAACTCACTGTCAGTGTATCAACATATTTTAACATGCAATTTGATAGTAAGGAT TCAATTTGACTTGTGATTGTATGATAAGATTTTATAATTCTGACTCCACTCCAGATAATACAACCCCTTAAACAATATGT TTATGTTTACGCTTTAATCTCACATACATCTGAAGAGCTGGGGTGAGGAAGATTTAGAGATCAAATTCCTAGAGGGGAAG TTTGACCGTTAAAAAACACATACACCTAAAGAGAAGGAAAAAAAAAAGAGAAATGAGATATATGAGAACTGATTTGATAC GAAAGAGAAAAAAAGTGAATTAAAATAGAAGAGAAAGTTGAGTATGAATGATTGCCAACCCTTGCACAGATAAAACATCT TTGCTTCACGAGTCTAGAAACTAAAAGGAAATCTACTTTAACCAAAAGTGGTCCTTGATGAAGTACACCTATAGAAGGGA CGGTATTTTGCACAGAACTTTGTCACTGCAATAAAGGATTGAAATTCTGTTGGATACCAAAAATTTAACTCCATAATTTC TG
CDS sequence (LotjaGi2g1v0167700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGAGAACGAAATCGAAGTGTCGAAATCGTTTAAGGATTTGGGTTTGCCCGATTCATTGGTAGAAGCTTGTGA AAAATTGGGTTGGACAACCCCATTGAAGATACAGGCAGAAGCCATTCCTCTTGCGCTGCAAGGAAAGGATGTCATTGGAC TTGCTCAAACAGGTTCTGGTAAGACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCTCGCCCGAAT CATTTCTTTGCTTGTGTGATGTCTCCCACAAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCTGA AATTGGTGTCAAGTGCGCTGTGCTAGTTGGCGGGATAGACATGGTACAGCAATCAATCAAGATAGCTAAGCAACCTCATA TTATTGTTGGGACGCCTGGACGAGTTTTAGATCACCTAAAAAACACCAAAGGATTTTCTTTTTCTCGACTAAAATACTTG GTTTTGGATGAAGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAGCGATTCCACGTGA GCGGAGAACATTTCTATTTTCTGCTACTATGACTAAGAAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGA AGATTGAAGCAGCATCTAAGTATTCCACTGTTGACACATTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACACAAGGAT TGTTACCTTGTATATATTCTCACTGAAATGGCTGAAAGTACGTCAATGGTGTTCACTCGGACATGCGATTCAACCCGGCT CCTGGCTTTGATTCTTAGGAATCTGGGTCTAAAAGCCATTCCAATTAATGGTCATATGAGCCAATCGAAGAGACTAGGAG CGTTGAATAAGTTCAAGTCGGGGGAGTGCAATATTCTCCTTTGTACTGATGTAGCTAGTAGAGGACTGGATATTCCAACG GTCGATATGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGCGTTGGAAGAACTGCTCGTGCAGG GCGCTCTGGGGTTGCCATTTCCCTTGTGAATCAATATGAACTGGAGTGGTATATTCAAATAGAGAAGCTTATAGGCAAGA AGCTACCAGAGTATCCTGCCCAAGAAGTGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGAGGCCAAAAGATTAGCAATG ATGAAAATGAAGGAAGCTGGAGGGAAGAAGAAACGAAGAGGAGGTGAAGATGATTTAGCTGAGGAGGATATTGACAAGTA CTTGGGTCTCAAGGAAGGAAAATCATCCAAAAAGTTTAGAAGAAGATGA
Protein sequence (LotjaGi2g1v0167700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEENEIEVSKSFKDLGLPDSLVEACEKLGWTTPLKIQAEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPN HFFACVMSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSFSRLKYL VLDEADRLLNEDFEESLNEILQAIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKD CYLVYILTEMAESTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPT VDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEVEVLLLEERVGEAKRLAM MKMKEAGGKKKRRGGEDDLAEEDIDKYLGLKEGKSSKKFRRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 219 | 218 | 1.0E-86 | – | |
| ProSiteProfiles | 11 | 39 | 29 | 11.377 | ||
| PANTHER | 12 | 249 | 238 | 1.8E-111 | – | |
| CDD | 12 | 216 | 205 | 6.34417E-138 | – | |
| PANTHER | 12 | 249 | 238 | 1.8E-111 | – | |
| SMART | 30 | 230 | 201 | 2.8E-59 | ||
| Pfam | 36 | 204 | 169 | 4.9E-49 | ||
| ProSiteProfiles | 42 | 215 | 174 | 33.364 | ||
| SUPERFAMILY | 81 | 368 | 288 | 5.55E-72 | ||
| ProSitePatterns | 161 | 169 | 9 | - | ||
| Gene3D | 220 | 437 | 218 | 2.9E-49 | – | |
| CDD | 227 | 356 | 130 | 1.48466E-59 | – | |
| Pfam | 242 | 347 | 106 | 1.6E-30 | ||
| ProSiteProfiles | 242 | 386 | 145 | 22.42 | ||
| PANTHER | 253 | 410 | 158 | 1.8E-111 | – | |
| PANTHER | 253 | 410 | 158 | 1.8E-111 | – | |
| SMART | 266 | 347 | 82 | 4.7E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0167700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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