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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0167700 |
| Transcript ID | LotjaGi2g1v0167700.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase DDX47; TAIR: AT5G60990.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10; TrEMBL-Plants: tr|A0A1J7G8N7|A0A1J7G8N7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0167700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:57879682..57885032) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGAAGAGAACGAAATCGAAGTGTCGAAATCGTTTAAGGATTTGGGTTTGCCCGATTCATTGGTAGAAGCTTGTGA AAAATTGGGTTGGACAACCCCATTGAAGATACAGGCAGAAGCCATTCCTCTTGCGCTGCAAGGTTAATTCTTATCTCTGC GGTTTTCAAGTAGAATTTTATTTGTCAAATAGAAACAGATAGATAGAGAGAAAGGTTGCATAATTATAATGATTGTTATA TGACCTTGATGATTAGTGGATACAACAACAACAACAAAAGCCGTATCCCGAAAATCACAAAACCCAAAACCCAATAATTA TGAGGGACTTGATGAATATTGGATATTGGGCATTATTTTTTTATATTGTTCTAGTTCATTGCATTAATATTTTACTACAT CAGTTCTGGAGGGTTGCATGATATTAATGGTGCTTAAACTCTACTAAATTGTTGGTTATTCTTTGTGGTTTTGTGTTTTC ACAGGAAAGGATGTCATTGGACTTGCTCAAACAGGTTCTGGTAAGACTGGAGCTTTTGCACTTCCCATATTGCATGCCCT CTTAGAAGCGCCTCGCCCGAATCATTTCTTTGCTTGTGTGATGTCTCCCACAAGGTTTGATACTCTAATAATTATCATGA TTTGATTTTCATATAATTCAAGTTCTACTGAAAGTGAATGTTTTGACTGATATGTAACTAGTATTTTCCTTCTGTTTTTC ACCATTTTCTTTGATCTAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCTGAAATTGGTGTCAAG TGCGCTGTGGTGAGTTCTAATTTGCTTTTTGGACTTCTTTAAGCATGACGGCTTCCTTTTTACTGCATAGCTTAAAGTTT GTTCTGTTTGACATTTTTTTCTATAGCTAGTTGGCGGGATAGACATGGTACAGCAATCAATCAAGATAGCTAAGCAACCT CATATTATTGTAAGTGTTACAATTGTTGTAGCCATGCTTTGAATTCACTTTATTGACGTACATCAGGAGTTATTGGGGAC TTGGGGTAATGATTGATTGATATCCAAAATATATTCTTGCATATGTGGAATTGTGGATAAGACATTTACCTATGTTTTGC TGAGGAAATGCAGTATTTTTTTCTGTGTTTATTTTTACTTATATCAAAGTCATACTCTTGCAGGTTGGGACGCCTGGACG AGTTTTAGATCACCTAAAAAACACCAAAGGATTTTCTTTTTCTCGACTAAAATACTTGGTAAGATTTCTACATTGCTTTG ATTTAAGTTCAGGTTTTAGTATTCATGTTAGTTTAATGCTTTATTCTAGTCTTATTGGTTTTTTCTTGATGCATTTTGGT GAATGTTTTTAAATGGTTATGAATACTATTGTTTTGCAGCAAAACTGAAAATTTCTCATGTTGAGCCGGATTTACTTTAA TTAATTAAATAATAATTTTCATGTGAAATGAAAGGCATGTGGCTAGATTTACTATGCTTCAATTTACATTAGTGATGGAA AATTTTACTGTTTGTCCGGATACAATTTGTGGATTGAGACAAACGTATGACAAATTTCAGTTCCATTGGAACAGAATTTT GCTGTGTACCTGACTCCTATTATGACCAGACTTGGATGATTGGTTGATGAGGCAAAATACAACCGTTTTTAAACATAATT ATTACTTTCACACTAAATAACAATTTTTTTCGTCGAACCAAACATGAGGACAATTCTATTGCCTTTAAATGCCCTCCTCA ACTTTTCTGATCTCTATAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCCCCGTATTT GTGTGTTCCAAAAAAGCATAGTTTAAGTTTAGTTCACTTTATGCATAATCTTCCCACTCAGTTTTCTTTTTTCCATGGTA AGTTTGATCTGCCTATTTTGTTTCATTGAAGAAGTCTTCACTAGTCATTGTTTGTAGTCAATATATTTAGAACTGTGACT GAGAATTCGTTGTTCATGTAGCTAAACTGTGACATTTATTTGATTGGAGAATTTGATTATTTGAATATGGTTTTTTAATT GATGTTAGTTTGATTTATTGTTGAGACATGCATGTTTCTGCTTTGGTTTAAGTATATCTTACACGGTTATGCAGTTATGT ATAAAGCTAATTAACTGCTGATTTGAACATGTCATTTCGTTGTAGGACACCTTGTGTTCTGCATTGATGGATGCTTGGAC TTGTTTGTAGATTTTACAAATAGATATATTTAAATAATCTATTTTGCTGTCTACCATGACACGTGCCCATCCTCATATTC AGAACATACATATAATCAGACTAGCCTGACTACTGAGTTTTGAGCAGGTTTTGGATGAAGCAGACAGGCTGTTGAATGAG GACTTTGAGGAATCACTTAATGAGATTTTACAAGCGATTCCACGTGAGCGGAGAACATTTCTATTTTCTGCTACTATGAC TAAGAAGGTATATATGAAGGTTTATTAATTACTGCATACTTACTAAATATATTATTTATTTTTGACATTTTTTTGTTCTT GGCATTGGCCATATATGATTTCTAAGTAAGCAAGTGAAGTCCTTTTTGTACATATTCTAAGATATGGAACCTATTGGATA TAGGCCCTTTGAAAAATCTTGTAAGGTTATAGCATAAGATCTGGTTGTTGGAACTTGGTTTATATCTTTTTATTTTTAAA TAGATTTAAAAAAACATTCAATCATATGATTTTAGGCCTAATATCTTATATTTTGACATGAAAACATACAGTTGCTCCAT TGAGAACTGTTGAAATGATATATTGATAATGAACAAAATGGTTTTTGTGTGCTGCTTATACACTTCAGATACTTGATTGT TTACTTGTAGTCTTGTACTCATTTATAATTTTATGTTGCTAATAGAGCAAGTTGCACTCTTGCTGTTGCAGGTCCAGAAG CTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGGTACATCTGTAATGTCTAAATACCCTTTACTTGAGTGATGTTTAAAT TATACCGCCTTCCCCTCTATTTCAAAATTTATTCTCCCTTCCGCTTAAAGATTTTATTCGTTACACTTTTGTCTATTTTA ATAATTTAATGTGAACAAGCTTCTTAGCTCTCTCTCCCTCCTCTGTCCCTCCCTCTCTATGTGATTTTTAGTGTCAAGGG CAGCTAGTACCTCTACTAGACATGAAAAGAAATGAAAACTTCGGGAGAAGTTTGAAAGTTGATATTAAATGGCTCTCAAA TTCATGTCATCTTTTGAAATCCTGAAGTGAATAATAATAGGGTGTGGAAAATTAGCTGCAGATGATACTCAAAGCTGCAC AAAAAGGGAAAAAGGATGTCCTTGAGTGCACAGTATCTCACCACCACTAAGTGTGTTTGGATGCCAGTTGAGTTAGTGTG AAGGAAAATTCTCGATCCATAAGAATTGTTATGTTCACTTTTTGTCTCAAAGTGAGTGCTAACGGGTATCCGAACATAAG TGGTTCATTCACATTATAGTGCGGCATATTTATCTATTAGGAAGGGGAATGTAATTTTTAAAGTTAGAGGGGAAGACTGT ATAGTTGAAGCATTTTTTAGAGGAGGGAAGTGTAATATATGTGTGTGTGTGTGTGTCTTCCTGATATTATTAACTATTTT TCTGTTTATTCAATTTAGATTGAAGCAGCATCTAAGTATTCCACTGTTGACACATTGAAGCAGCAGTATCGCTTCTTGCC TGCCAAACACAAGGTTTCTGCTCTCTTGTTAAAAAATGTTGGATTTAAAAAATGTCTTGGCTACATCATACATTGAATTT CTTACTACTCATGGGTTCTTGGCCCAATGAAGGCTGCGTAATTACTACTTTACAAAATTATTTGAAATGTCATAGAATTA CATTCCATTTTTTAAATGAAGCATATCATTGAAACGAAGTCTCTGTTATTTTGCCACAGCTAAGTTTTCAGTGAGGTCTT CAAAGATATAATGTTGTGAAAGAATTTCATGAAGTTGGCACCATTTTCCTTTTAAAACATCTGATATTTGCATCATGTTA TTAGACTGTGTTTTAAACTTATAATAAATTTGCTATTTGGAATAGAATTAACACAAATTCATGCATTTTGGGTTTAATGA ATCATGACTATTATCTTTCATGCTTGTGATGACAGCTTATTAATTGTTTGTCTTACAGGATTGTTACCTTGTATATATTC TCACTGAAATGGCTGAAAGTACGTCAATGGTGTTCACTCGGACATGCGATTCAACCCGGCTCCTGGCTTTGATTCTTAGG AATCTGGGTCTAAAAGCCATTCCAATTAATGGTCATATGAGCCAAGTAATTGTTCTAGAAATCTTGTATTGGAATTTGTT CTAAATTTGTCGTCTTTCCTTGGTATGGGAGGGTCCTATTGGGGGTGCAGGAAGTGATTGTCTCTGTCACCTTAATGATT GGTGTGTGCCAATGGAGCATCTCTAATTTTTATTTATAATCTTTTGACAGTCGAAGAGACTAGGAGCGTTGAATAAGTTC AAGTCGGGGGAGTGCAATATTCTCCTTTGTACTGATGTAGCTAGTAGAGGACTGGATATTCCAACGGTCGATATGGTGAT TAACTATGACATTCCCACAAACTCCAAAGTAAGATGTGCTATGATTTACTTTTATACATATATTGACATGTTTTATTACA ATTATATTTAATCAAAAGTTTGCAGTTAAGTTAATGTAACTATAGGAATTTGTTAGTAATTTTATGGTTATACATGACTC AAGTACTTGGACTATGAAAGGAGATGAAAATTTTTAGAATTTTTTAGATTTAATATTAACTGAATTCTGATGTTGTGAAC TACAGGATTATATACATCGCGTTGGAAGAACTGCTCGTGCAGGGCGCTCTGGGGTTGCCATTTCCCTTGTGAATCAATAT GAACTGGAGTGGTATATTCAAATAGAGAAGCTTATAGGTAAGTAGTACATGATATGCTTTTTTTTGACATTAAGTAATGA AAGTTTCTCAATAAATAACAAATGCAAGTGTATTTCAGGCAAGAAGCTACCAGAGTATCCTGCCCAAGAAGTGGAAGTTT TGCTTTTGGAAGAGCGTGTTGGTGAGGCCAAAAGATTAGCAATGATGGTAAGACTTTTATTGAGCTCAGTTACATGTTAA ACTATTTTTTCTGTCCATTTATTTTGTAGAGAAAAAATAAGTTGGGGAGGTTTGTGGGAAGTGGAAGTTTTTTTACCTAC CTTATTTGAATTTCATTTTCATTGGGTACAATACAAGTAACGTGGTAATGAGGTTTCCAGTATTTTCTTAA
CDS sequence (LotjaGi2g1v0167700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGAGAACGAAATCGAAGTGTCGAAATCGTTTAAGGATTTGGGTTTGCCCGATTCATTGGTAGAAGCTTGTGA AAAATTGGGTTGGACAACCCCATTGAAGATACAGGCAGAAGCCATTCCTCTTGCGCTGCAAGGAAAGGATGTCATTGGAC TTGCTCAAACAGGTTCTGGTAAGACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAAGCGCCTCGCCCGAAT CATTTCTTTGCTTGTGTGATGTCTCCCACAAGAGAGCTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCTGA AATTGGTGTCAAGTGCGCTGTGCTAGTTGGCGGGATAGACATGGTACAGCAATCAATCAAGATAGCTAAGCAACCTCATA TTATTGTTGGGACGCCTGGACGAGTTTTAGATCACCTAAAAAACACCAAAGGATTTTCTTTTTCTCGACTAAAATACTTG GTTTTGGATGAAGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTTTACAAGCGATTCCACGTGA GCGGAGAACATTTCTATTTTCTGCTACTATGACTAAGAAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGA AGATTGAAGCAGCATCTAAGTATTCCACTGTTGACACATTGAAGCAGCAGTATCGCTTCTTGCCTGCCAAACACAAGGAT TGTTACCTTGTATATATTCTCACTGAAATGGCTGAAAGTACGTCAATGGTGTTCACTCGGACATGCGATTCAACCCGGCT CCTGGCTTTGATTCTTAGGAATCTGGGTCTAAAAGCCATTCCAATTAATGGTCATATGAGCCAATCGAAGAGACTAGGAG CGTTGAATAAGTTCAAGTCGGGGGAGTGCAATATTCTCCTTTGTACTGATGTAGCTAGTAGAGGACTGGATATTCCAACG GTCGATATGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGCGTTGGAAGAACTGCTCGTGCAGG GCGCTCTGGGGTTGCCATTTCCCTTGTGAATCAATATGAACTGGAGTGGTATATTCAAATAGAGAAGCTTATAGGCAAGA AGCTACCAGAGTATCCTGCCCAAGAAGTGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGAGGCCAAAAGATTAGCAATG ATGAGAAAAAATAAGTTGGGGAGGTTTGTGGGAAGTGGAAGTTTTTTTACCTACCTTATTTGA
Protein sequence (LotjaGi2g1v0167700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEENEIEVSKSFKDLGLPDSLVEACEKLGWTTPLKIQAEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPN HFFACVMSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSFSRLKYL VLDEADRLLNEDFEESLNEILQAIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKD CYLVYILTEMAESTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVASRGLDIPT VDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEVEVLLLEERVGEAKRLAM MRKNKLGRFVGSGSFFTYLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 219 | 218 | 8.8E-87 | – | |
| ProSiteProfiles | 11 | 39 | 29 | 11.377 | ||
| PANTHER | 12 | 250 | 239 | 3.9E-110 | – | |
| CDD | 12 | 216 | 205 | 1.7069E-138 | – | |
| PANTHER | 12 | 250 | 239 | 3.9E-110 | – | |
| SMART | 30 | 230 | 201 | 2.8E-59 | ||
| Pfam | 36 | 204 | 169 | 4.3E-49 | ||
| ProSiteProfiles | 42 | 215 | 174 | 33.364 | ||
| SUPERFAMILY | 81 | 368 | 288 | 4.38E-72 | ||
| ProSitePatterns | 161 | 169 | 9 | - | ||
| Gene3D | 220 | 386 | 167 | 2.9E-48 | – | |
| CDD | 227 | 356 | 130 | 8.98508E-60 | – | |
| Pfam | 242 | 347 | 106 | 1.5E-30 | ||
| ProSiteProfiles | 242 | 386 | 145 | 22.42 | ||
| PANTHER | 253 | 404 | 152 | 3.9E-110 | – | |
| PANTHER | 253 | 404 | 152 | 3.9E-110 | – | |
| SMART | 266 | 347 | 82 | 4.7E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0167700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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