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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0182000 |
| Transcript ID | LotjaGi2g1v0182000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|I1L3W8|I1L3W8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60459124..60464101) extracted from Lotus japonicus Gifu genome v1.2.
CATCACATGATCACACAATATAAACTCTGCTGAGAACCCACGCTTCCTTCATCCTCATCACACACAGACCATTTCAGATT TCAGCTAGGGCACGCAACGCACCTTCTTCCTTCGCGGCCACCTCTCAATTCTGCGCCGCCTCAAAAGGGTAATCTCCCTC TCTCTGATTCCAATCAAATCACCGATTCTGCAAATTTAAACTGTTGATCTCATGCATCTATTGTTTTATATTCATAGATC GTTTTTTTATTGCTTTTAAATGCTGTGATTGCTTATGGATTCTCATGTTCTCGGTACTGGTTTCATGATCATTAAAATTA GCTATTTATTATGATTTTTATGAGGTGTTTTTATCTGGGGTTGATGTTAAATGCTCTGTTTTGTGTTGATTTAATTTGGT GTTAATATTTTATGGGCAACTTGGCATGAGAGAGAAGGTAACAACCAAGCAGAATGATAAAAAAAGGGTCTTGTTGCAGT TTTATATTGTGATTTTAATATGTTTGCACCTGAGAGGCTAAGAACCTGTGTGTTTATATTAGTTTATGTGAGAATTTTGT GGATTAAGTTGGGATATATTTAGGGGGTGGGGATTGGAATTTTATGAGGGAAAATTGTGGATGGAAACCTGTATTGAATC TTAATATTGTTACTTTATAATCTAATGCATGATCTTGATGTAAAAAATGGAATCTTGTGTGTTGCATCTTTCTGTTGCTT TCTTCATTGAATTGCTATGTTAATTTTCTAGTTTTTGAAGGATTGAAGCCATGATGGTGATCTGTGATTAGCGAATTAGC AGCATGATTTGATGTTCAAGTGTAAATTTTTATTGAATTATATCTTTATGTTCAGGTGTTTTTATTTTAATTGAATTATT TCCCCCCTGGTATTGGTATAATCTACTTTTTATGTTTGATTTATATTGTTCAACCAAACATCAACTTCATGTTTTCCCTA ATTTCATCTCTGTGGACATGTCTTATTTGTTGTCTTTCTTATTTATTTAAAGGTTGTTGGCCTGTCACCGTTTGAAAATG GTGGATGCTCATGAGACTGATAAGAACATTGAGGTATGGAAAATCAAGAAATTGATCAAGGCTCTTGAGGCTGCTAGAGG AAATGGGACGAGTATGATTTCCCTTATTATGCCTCCACGTGATCAAGTGGCTCGTGTTACCAAGATGCTTGGTGATGAGT TTGGAACTGCTTCAAACATCAAAAGCAGAGTGAATCGACAGTCTGTGCTTGGTGCCATCACTTCTGCACAGCAAAGGCTT AAGCTTTACAACAAGGTTCCTCCGAATGGGCTTGTTTTGTATACTGGAACAATTGTGACTGAAGATGGGAAGGAAAAGAA GGTCACCATTGATTTTGAGCCTTTCAGACCAATCAATGCGTCTCTCTATCTTTGTGACAATAAGTTTCACACTGAAGCTT TGAACGAGCTCCTGGAATCTGATGACAAGTTTGGCTTTATTGTCATGGATGGAAATGGCACTCTGTTTGGAACCTTGAGT GGTAATACAAGAGAGGTGCTTCATAAGTTTAGCGTTGATCTCCCGAAGAAGCATGGACGAGGAGGGCAATCAGCTCTACG GTTTGCCCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCAGAGCTCGCCACCCAGTTTTATATTAACC CTGCTACCAGCCAGCCCAATGTTTCAGGTTTGATACTTGCTGGGTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCAGAT ATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTAGATGTATCTTATGGAGGGGAGAATGGGTTTAATCAGGC TATTGAACTATCTGCTGAAATTCTGGCCAATGTAAAGTTTATTCAGGAGAAAAGATTGATCGGAAAATACTTTGAGGAAA TCAGCCAAGATACAGGAAAGTATGTTTTTGGTGTGGATGATACCCTTAAAGCTTTGGAGATGGGTGCTGTTGAGACACTT ATTGTGTGGGAAAATTTGGATATGAATAGGTATGTCTTAAAAAACAATGTTACTGGTGAGATTGTCATTAAGCACTATAA CAAGGCAGAGGATGCCGACCAGAGCAATTTTAGGGATCCCGTGAGCTCTGCTGATTATGAGGTTCAGGAAAAGTTGTCCC TGTTGGAGTGGTTTGCAAATGAATACAGACGGTTTGGTTGCACTCTTGAGTTTGTCACCAATAAGTCACAAGAAGGCTCA CAGTTTTGCAGAGGTTTTGGTGGGATAGGGGGTATCTTGCGTTACCAGCTTGATATGAGATCATTTGATGAGTTCTCTGA TGATGGAGGTGTATATGAAGATTCTGAATAGCAATCAATGAAATGCTTCCTACTGCTGGTGCAGGAAGGGAAGGTCAGAA TACCTGCACCAGTATGGGAGGTGGTTGCACGTGCTGCTACTGCTCCTCCTCCTCCTCATCTGTCTGTGGTGATGCGTGGA AGGTTTGTTTGTGAACCGAGGTTCATTTATATTGCCTTTTTCCCACATTTTTCAGCTTAGTATTTACACTACACTCGATG CTCAACTGTTTTGTCGGTTAGAAATTACTTCATATAACTTATAGTGAGTTTCATAAACTGTTTGTTTCAATATTGTTTCA GATGCTTTGCCCCAAAGTTGCTCTCTGATATGAGTTGCTCTCTTGTTCTCATATCTTTCAATCTCTGGCACGACAAATTT CAGCAACATTGCTGGCAACAACTGGTGAAAATCTGCTATTTCCTCTTACGTTTAGATATTATTATAGTGTTTTTTTTATA AGCCAAGATCTATTATTGTATTGTTCTTCCTTTCTTCACATGCTTAATTGTTGGTTTTTTACCTTTTAGCTCCCCTGCTA TCTGCTTGCATTCAGAAAGGCAAGAACTGAATCATGCCCCCCCAAGAAAAACGAACTAGCATTAATGAAGGTCAGTCCTC ATAAATGAGCTACACATATCTATGCATGTACTTTTTTATTTGTCCCAATTCAGCTTTTCTCAACATCTTCAAAATAGAAT GTAACTGTTAGATGTATTGCTTTGCATTTATGTTCTTTTTTAATACCCCTCAAGTATAGCTTCATTGATTGAAACACATT ATTTTTTCTGATCTAAGAATTGTCTGACCTTTGTTTTTTGACATTTGGTCATGATACTAATCTGTCTTATCCTTGAAACT TTTTTTCTTTGGGAAAATAGAGAATTGGATTCTGGGACAACTTTTGGTACATTATTTTTTGTCTTGCATGCCAGTCTCCT CCGCTTGAAACATTCCAATATATTATACACTCAATTTAATTCACAACATGCCCCACTCCGGATTCTACTTTATCCTACAA ACTTAGAAAATAAATGAAAGATTCATTTTAGTTGGAAATTTCTGACTGTGCTAAGCTTAAATTGTAGTCTTGTATTCTAT TGTCCTTCTTTTGGTTGTCTTTTTACGGATCTTGACATTACAAACAAATTGATAATTCTTCTGTATTGTAGTCTTTGTTG GTTCTGTCTATCTATGTGACCCTGTGAAGCTTTGATGAAGAGTACGGTCACCAAGCTATGCTTCCTAAGGTGCATTTTAG TTTACCTCTTTTTTTTGAACTGATGATTTAATGCCTAATACAGCTCTTTATTATCATTGAATAGAAAATATTTAGCTTTG ATACTTCAATGTTCAATAGTAAACTATTTTCATAATTATAATCTTCAAGGAAAAGAAACTGTTCTCATAATTATGATGTT TTTCCTTCTGATATTGGTTTCTAGTATCATAATTATCATGATTAATTATTGTTAGTAAATCTCAAAATGATTAATGTAAG TGAATGACCATGTGTGTGTTAGCAATGATTGGCTAGTCAGTAGTCACAAATGTCTTTTGATTAATTTATACCCATGTTTG TTTCTATTATATTGTCCGTACATATGCTGCATATCCATTTTACATCCAGCCATTTTGCATAGCTGTGCTTACACTCTCGC TATGCCATCACCAGCATCTATATTCTATAGTATCAGTAATGCATGCACTGAGGCACTGTCCATTCGTTCTGTAATTATCA GCCAATGTTGTTTTTTAATTCGTGCCATGTTTATTAACGAATGTTATATTCTTCTTACCTATGCATCATATCCATTTTAC TTATAGACACTTTAGCACAGTCAGGCATTACTTACTACTTTCGCGTACAGTTGAATAATTGCTTATTTGCTTTACATGGT TTTGTAGGTGAATTCAGTTATTTCAATAAATGTACTTTTTCAAGGATGCTTTGAGCATATACATGGCACTTCAGTGCTCG AGCCAGTGACTACACCCCTCGTGCCTTAGTCATGCTTTTAGAACCTTGTATTGTTGTGTTGGACCAATGTTCTTATTTTC TGAGTATTGTATCTTCTATCAAATAAAGAAGGCCAAATTGTGCTATATAGCTCTGCTACACATGAGGTACAAGTAGGGAC CGAACCCAATTTGTGGATCTTATATAGGCTGCCTTATCCTGCATTTGTGCAAGAGGCTTCTATTGAATAGTACAACTTAT ATTGGTTGATTGCTTAATGGTGTGTGATATGATGTTTTATGAAAATTTTAGCTTGTTATTAATATTAAGCTATATAAACG CCATGGTTTTACTTTTCGATTTATGAAGTGTTGAGCAATGTTTATGAACATCTAAAATGAAATAGAAAGGGAAGACAGAT AAATTAGACATGTAATATATAATAATATAAAGAGAGAAAATGAGGTGCTTAAAATGTGTAAATACGCTTAATTTTTCCAT GAATCATCACTAATATGAAAAGGAGCCCCAAAGTTCACATATATCATGACAGAAAATAAATGCTGATAATAGTTCTTTCC TTTTTCCTTTCCTCTCATCAAACATTCATTCATTTCATTGACCTCAAAGTAAAGGTCTGTCTACAAAGTACAAACCATAA ATTAACTTAATAAGCCTG
CDS sequence (LotjaGi2g1v0182000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGATGCTCATGAGACTGATAAGAACATTGAGGTATGGAAAATCAAGAAATTGATCAAGGCTCTTGAGGCTGCTAG AGGAAATGGGACGAGTATGATTTCCCTTATTATGCCTCCACGTGATCAAGTGGCTCGTGTTACCAAGATGCTTGGTGATG AGTTTGGAACTGCTTCAAACATCAAAAGCAGAGTGAATCGACAGTCTGTGCTTGGTGCCATCACTTCTGCACAGCAAAGG CTTAAGCTTTACAACAAGGTTCCTCCGAATGGGCTTGTTTTGTATACTGGAACAATTGTGACTGAAGATGGGAAGGAAAA GAAGGTCACCATTGATTTTGAGCCTTTCAGACCAATCAATGCGTCTCTCTATCTTTGTGACAATAAGTTTCACACTGAAG CTTTGAACGAGCTCCTGGAATCTGATGACAAGTTTGGCTTTATTGTCATGGATGGAAATGGCACTCTGTTTGGAACCTTG AGTGGTAATACAAGAGAGGTGCTTCATAAGTTTAGCGTTGATCTCCCGAAGAAGCATGGACGAGGAGGGCAATCAGCTCT ACGGTTTGCCCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCAGAGCTCGCCACCCAGTTTTATATTA ACCCTGCTACCAGCCAGCCCAATGTTTCAGGTTTGATACTTGCTGGGTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCA GATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTAGATGTATCTTATGGAGGGGAGAATGGGTTTAATCA GGCTATTGAACTATCTGCTGAAATTCTGGCCAATGTAAAGTTTATTCAGGAGAAAAGATTGATCGGAAAATACTTTGAGG AAATCAGCCAAGATACAGGAAAGTATGTTTTTGGTGTGGATGATACCCTTAAAGCTTTGGAGATGGGTGCTGTTGAGACA CTTATTGTGTGGGAAAATTTGGATATGAATAGGTATGTCTTAAAAAACAATGTTACTGGTGAGATTGTCATTAAGCACTA TAACAAGGCAGAGGATGCCGACCAGAGCAATTTTAGGGATCCCGTGAGCTCTGCTGATTATGAGGTTCAGGAAAAGTTGT CCCTGTTGGAGTGGTTTGCAAATGAATACAGACGGTTTGGTTGCACTCTTGAGTTTGTCACCAATAAGTCACAAGAAGGC TCACAGTTTTGCAGAGGTTTTGGTGGGATAGGGGGTATCTTGCGTTACCAGCTTGATATGAGATCATTTGATGAGTTCTC TGATGATGGAGGTGTATATGAAGATTCTGAATAG
Protein sequence (LotjaGi2g1v0182000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDAHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQVARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQR LKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTL SGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQS DMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVET LIVWENLDMNRYVLKNNVTGEIVIKHYNKAEDADQSNFRDPVSSADYEVQEKLSLLEWFANEYRRFGCTLEFVTNKSQEG SQFCRGFGGIGGILRYQLDMRSFDEFSDDGGVYEDSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 437 | 437 | 1.3E-292 | – | |
| PANTHER | 1 | 437 | 437 | 1.3E-292 | ||
| Gene3D | 1 | 135 | 135 | 2.3E-66 | ||
| SMART | 4 | 140 | 137 | 4.1E-48 | ||
| SUPERFAMILY | 6 | 140 | 135 | 2.62E-57 | ||
| TIGRFAM | 13 | 417 | 405 | 1.3E-124 | ||
| Pfam | 17 | 138 | 122 | 1.1E-19 | ||
| Gene3D | 136 | 277 | 142 | 2.1E-67 | ||
| SUPERFAMILY | 142 | 276 | 135 | 9.81E-47 | – | |
| Pfam | 144 | 277 | 134 | 1.3E-41 | ||
| SUPERFAMILY | 278 | 420 | 143 | 8.98E-50 | ||
| Gene3D | 279 | 437 | 159 | 1.5E-60 | ||
| Pfam | 281 | 418 | 138 | 1.3E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation release factor activity | Involved in catalyzing the release of a nascent polypeptide chain from a ribosome. | ||
| Biological process | Translational termination | The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code). |
Expression pattern of LotjaGi2g1v0182000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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