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LotjaGi2g1v0182000.3

Overview

Field Value
Gene ID LotjaGi2g1v0182000
Transcript ID LotjaGi2g1v0182000.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic peptide chain release factor subunit 1-1; TAIR: AT3G26618.1 eukaryotic release factor 1-3; Swiss-Prot: sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3; TrEMBL-Plants: tr|A0A0R0I9D1|A0A0R0I9D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0182000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:60461751..60463357) extracted from Lotus japonicus Gifu genome v1.2.

TTTCTAGTTTTTGAAGGATTGAAGCCATGATGGTGATCTGTGATTAGCGAATTAGCAGCATGATTTGATGTTCAAGTGTA AATTTTTATTGAATTATATCTTTATGTTCAGGTGTTTTTATTTTAATTGAATTATTTCCCCCCTGGTATTGGTATAATCT ACTTTTTATGTTTGATTTATATTGTTCAACCAAACATCAACTTCATGTTTTCCCTAATTTCATCTCTGTGGACATGTCTT ATTTGTTGTCTTTCTTATTTATTTAAAGGTTGTTGGCCTGTCACCGTTTGAAAATGGTGGATGCTCATGAGACTGATAAG AACATTGAGGTATGGAAAATCAAGAAATTGATCAAGGCTCTTGAGGCTGCTAGAGGAAATGGGACGAGTATGATTTCCCT TATTATGCCTCCACGTGATCAAGTGGCTCGTGTTACCAAGATGCTTGGTGATGAGTTTGGAACTGCTTCAAACATCAAAA GCAGAGTGAATCGACAGTCTGTGCTTGGTGCCATCACTTCTGCACAGCAAAGGCTTAAGCTTTACAACAAGGTTCCTCCG AATGGGCTTGTTTTGTATACTGGAACAATTGTGACTGAAGATGGGAAGGAAAAGAAGGTCACCATTGATTTTGAGCCTTT CAGACCAATCAATGCGTCTCTCTATCTTTGTGACAATAAGTTTCACACTGAAGCTTTGAACGAGCTCCTGGAATCTGATG ACAAGTTTGGCTTTATTGTCATGGATGGAAATGGCACTCTGTTTGGAACCTTGAGTGGTAATACAAGAGAGGTGCTTCAT AAGTTTAGCGTTGATCTCCCGAAGAAGCATGGACGAGGAGGGCAATCAGCTCTACGGTTTGCCCGTCTTCGCATGGAGAA GCGTCATAACTATGTGAGGAAGACTGCAGAGCTCGCCACCCAGTTTTATATTAACCCTGCTACCAGCCAGCCCAATGTTT CAGGTTTGATACTTGCTGGGTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCA AAAATACTTAATGTTGTAGATGTATCTTATGGAGGGGAGAATGGGTTTAATCAGGCTATTGAACTATCTGCTGAAATTCT GGCCAATGTAAAGTTTATTCAGGAGAAAAGATTGATCGGAAAATACTTTGAGGAAATCAGCCAAGATACAGGAAAGTATG TTTTTGGTGTGGATGATACCCTTAAAGCTTTGGAGATGGGTGCTGTTGAGACACTTATTGTGTGGGAAAATTTGGATATG AATAGGTATGTCTTAAAAAACAATGTTACTGGTGAGATTGTCATTAAGCACTATAACAAGGCAGAGGATGCCGACCAGAG CAATTTTAGGGATCCCGTGAGCTCTGCTGATTATGAGGTTCAGGAAAAGTTGTCCCTGTTGGAGTGGTTTGCAAATGAAT ACAGACGGTTTGGTTGCACTCTTGAGTTTGTCACCAATAAGTCACAAGAAGGCTCACAGTTTTGCAGAGGTTTTGGTGGG ATAGGGGGTATCTTGCGTTACCAGCTTGATATGAGATCATTTGATGAGTTCTCTGATGATGGAGGTGTATATGAAGATTC TGAATAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0182000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGTTGGCCTGTCACCGTTTGAAAATGGTGGATGCTCATGAGACTGATAAGAACATTGAGGTATGGAAAATCAAGAA ATTGATCAAGGCTCTTGAGGCTGCTAGAGGAAATGGGACGAGTATGATTTCCCTTATTATGCCTCCACGTGATCAAGTGG CTCGTGTTACCAAGATGCTTGGTGATGAGTTTGGAACTGCTTCAAACATCAAAAGCAGAGTGAATCGACAGTCTGTGCTT GGTGCCATCACTTCTGCACAGCAAAGGCTTAAGCTTTACAACAAGGTTCCTCCGAATGGGCTTGTTTTGTATACTGGAAC AATTGTGACTGAAGATGGGAAGGAAAAGAAGGTCACCATTGATTTTGAGCCTTTCAGACCAATCAATGCGTCTCTCTATC TTTGTGACAATAAGTTTCACACTGAAGCTTTGAACGAGCTCCTGGAATCTGATGACAAGTTTGGCTTTATTGTCATGGAT GGAAATGGCACTCTGTTTGGAACCTTGAGTGGTAATACAAGAGAGGTGCTTCATAAGTTTAGCGTTGATCTCCCGAAGAA GCATGGACGAGGAGGGCAATCAGCTCTACGGTTTGCCCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACTG CAGAGCTCGCCACCCAGTTTTATATTAACCCTGCTACCAGCCAGCCCAATGTTTCAGGTTTGATACTTGCTGGGTCAGCT GATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTAGATGTATC TTATGGAGGGGAGAATGGGTTTAATCAGGCTATTGAACTATCTGCTGAAATTCTGGCCAATGTAAAGTTTATTCAGGAGA AAAGATTGATCGGAAAATACTTTGAGGAAATCAGCCAAGATACAGGAAAGTATGTTTTTGGTGTGGATGATACCCTTAAA GCTTTGGAGATGGGTGCTGTTGAGACACTTATTGTGTGGGAAAATTTGGATATGAATAGGTATGTCTTAAAAAACAATGT TACTGGTGAGATTGTCATTAAGCACTATAACAAGGCAGAGGATGCCGACCAGAGCAATTTTAGGGATCCCGTGAGCTCTG CTGATTATGAGGTTCAGGAAAAGTTGTCCCTGTTGGAGTGGTTTGCAAATGAATACAGACGGTTTGGTTGCACTCTTGAG TTTGTCACCAATAAGTCACAAGAAGGCTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGGGGTATCTTGCGTTACCAGCT TGATATGAGATCATTTGATGAGTTCTCTGATGATGGAGGTGTATATGAAGATTCTGAATAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0182000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLLACHRLKMVDAHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQVARVTKMLGDEFGTASNIKSRVNRQSVL GAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMD GNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSA DFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLK ALEMGAVETLIVWENLDMNRYVLKNNVTGEIVIKHYNKAEDADQSNFRDPVSSADYEVQEKLSLLEWFANEYRRFGCTLE FVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGGVYEDSE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.960.10
4 144 141 1.1E-66
IPR024049
PANTHER
PTHR10113:SF26
10 446 437 1.0E-292 –
PANTHER
PTHR10113
10 446 437 1.0E-292
IPR004403
SMART
SM01194
13 149 137 4.1E-48
IPR005140
SUPERFAMILY
SSF55481
15 149 135 2.75E-57
IPR024049
TIGRFAM
TIGR03676
22 426 405 1.4E-124
IPR004403
Pfam
PF03463
26 147 122 1.2E-19
IPR005140
Gene3D
G3DSA:3.30.420.60
145 286 142 2.2E-67
IPR042226
SUPERFAMILY
SSF53137
151 285 135 1.05E-46 –
Pfam
PF03464
153 286 134 1.3E-41
IPR005141
SUPERFAMILY
SSF55315
287 429 143 9.28E-50
IPR029064
Gene3D
G3DSA:3.30.1330.30
288 446 159 1.6E-60
IPR029064
Pfam
PF03465
290 427 138 1.3E-36
IPR005142

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003747
Molecular function Translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
Subterm of
GO:0006415
Biological process Translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0182000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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