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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0197000 |
| Transcript ID | LotjaGi2g1v0197000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamyl-tRNA(Gln) amidotransferase subunit A; TAIR: AT3G17970.1 translocon at the outer membrane of chloroplasts 64-III; Swiss-Prot: sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64; TrEMBL-Plants: tr|G7LE58|G7LE58_MEDTR Translocon at the outer membrane ofs-like protein; Found in the gene: LotjaGi2g1v0197000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63187113..63194807) extracted from Lotus japonicus Gifu genome v1.2.
TAATTTATTAGTATATATATTTTCTCATTATCTTCAACGCCAAATTAGCTACTGCTATAGTATAGGTCGGTAATTCCGTG GTGTGCTGCTATCTTTCGATTCTTGCTGCTGCTTTGAGGTGTTGGTTGCGGCGTCTCAGCCTCCTCCTTCTCCTCCTCCT CCTCCGTCTTCGGTTCCACCCCTTTTCTCTTCTCTTCATCATTCATGGCGTCTCAATCTACCAATCTATGGGTCTTGTTG GGACTTGGTTTGGCTGGAATCTTCCTCATGACCAGAAAGCTCAAGAAGCGTTCAATCAAGCAAGACTTTGGTGCTTTCAT CCACAAGCTTCTGCTTCTTCCTCCTCCTCAACCTGCTCCTCCCAAAGCTCCTCACCCTCTCACTTCCCTCAACTTCGCCG TCTCTGACCTGTATGTAACTTTTCTCACATGCCCACTTCATTTTTTTACTCTGATTTCTCAAAGTTTGTTTCTTTTTGTG GTTTTGATTAATTGGTATTTGCTGTTTTCTGCAACTGGGGTGCTTTTGTTTTGCTTCTCCTGAACATAAAATTGATTTTT TTGTTTTTTTTTTTTGCAATGAACATTTCAATCCCTTAACCCCATCAATTTTCTCTTGCTGAAATTGGATTGATTATTGT ATTTGAATTGCAATTGTGTATCTTGTGATTTGATGTTAATTTCTTCAAGAAAAAGAAGATACTTCTAGTACCATTTTTGT GTGTTTTTGATTTACAATGTTGAGGCCTCCATTTTTTTTGCTTGGCAATAAAGATATTTTTTTTTCATAATGGTTACCAG ATTTGACATAGATGGACATGTGACCACGTTTGGGCATCCAGAGTGGGCAAGGACGCATGAAGCTGCTTCCCAGACATCAC CTGTGGTTTCTGCTCTGGTTGAAGGAGGTGCAACCTGCATTGGGACAACTGTTGTGGATGAACTGGCATATGGGTTGGTT CCATATTCCACTATTATTCTTTTTCTCTTACATTTATTGATGAAAGATGATGATAATGAATCGAATTTCAGTATATAGTA TATACCCCCCTCATTTATGGATTGTTGGCAAGGCATGCTTTGTAGTATGATTTGTTTCCTAGGCTAAGAGATGTAGAAAT ATTTGTTAATGAAATCGAGTATAGAAAGATAAGCATATGGACAGGAGTCCAAATATGATAAAAGCCCTGGCTACTCACCA CTTATGATGTAGCATTGAAGATTGTAAAGACATGAACTGTTGCACATAGGGCTTATAGTGTGAATTTAATATCCTCCCAT TAATGATGTTCTGGAATTTCTTGATTTGAGAAACATAACTCATTTTTGTCATTCTTTATTTTCAGTATTAGTGGTGAAAA TAAACAGTATGGAACACCAACTAATCCTGCTGTGCCTGCTCGGGTACCGGGTGGCTCCTCTAGTGGTGCTGCTGTGGCTG TTGCTTCTAATTTAGTTGACTTTGCACTAGGTGAGCTTTTTGATATCTTTTCAATAGCCTTTCTTCATTCTTCTTTGTTT TTCTAAAGGCACATGGCAAGTTCATTGTCACTTACGGATGTCATTTAGAAGGTTTTCTATGTATTTATTTATTTTTGATA TGTGTGTGTCTTCCTTCATTGGGCTGATTAAGGCCTCTTGCAAAAATAAAATAGACACAGGATAATAATATTATATCTAG AGTCAGGATTTGTTGGCACCAGGTTGTAAGGTTTGATATACTTAGACCCTTTAATAACACTTATATAAATGGTGAATTTT ATCAATCCAACTGCTAGGTTGAAAGTTCTCAACTAAAATAAGTATATAAATTTTGTATAATTCAAAAAACAATTGATATT TTATCGCACCATGTTATTTTAAGATATAATATGTTATTTAAAATTTAAATAAATATCTGCAATACAATAACCTACCTCTA AATGTCTAAGTTACCTAAATTTTATTTACATGATCATCAAGACAATGTAACACGACTCAACGGTTAGATTGATTAATTTT TCATTCTATAAGAAGTTATTAGACACTTTAAGTGTTCAATACTTTCACTTTCACCCAGTGCATATATTAGTCTGTAGTAA TAGAATTGATGCCAACCACACACTGGCTAATTTTGGTTCTTGGAAAACACAATGGACCATATTCATAGCTCGTAACATAA TTTAATTACATAATATAGGTTGATAGCAAATTAGAACAATCTGTTCGAGATATCAAATCCTGTGTTTGATCTGTGGAAGA CCTAATCGATGGTTGTTTGGGCAGAATAGGGATGGCCTCTTCTTTGTGGGTTTGCTTATTCTCACCAAGTGTGTTGTCTA GTTGCATTCTTGGTGCATGCCTTTGTTTCTCAATTTATCTTTATAATAAAGAATATGAGGAATTCATTAGAGGGGTATGT TATAGTGATGGACAATTGGCAATTTCTCATGCATAAATGCATTTGTAACGTATTGGGAGTTTGGAACATAGTTCACTAAC TATTTTCTAGATTTAAGTCAAGGAAAATCCAGAATTTGATGAATTAACTGTGTCAAGCCTTTTGTTTATGGGCAATACAA CATCCATTCTTTGACTTGTTCGGCTGATTTCATCATTAATGGATGGTATTGCTGTAACTTTGGAATCGTAGTTTGTGTAA GTTTCTAGACTTATATTACGAAGAAATTATGGTTAAATTGTTTAAAGGCTAATATACTTCTTTTTATATATAACTTTATT ATTACTGGTCTAGTATCATCACAAATTCAACATATGCTGATATGTAAATATTTGCCTGATACCATCATGCTTTGCCCCAT CTTATATAACAGGTATTGATACCATCGGAGGGGTGAGACTACCGGCCGGATTTTGTGGCATTTTGGGATTTCGGCCTTCA TATGGGGCTGTTTCTCATATTGGAATCATACCTGTTTCGAAAAGTCTGGAGACTGTTGGTATGGATGATTCAATTATTGA TTTTTTTTGAATAGCTAGTATATTTCTAAAGTCTAAAGATCAAAGCCCAAGTGCTCTAGCTCATCTGCTGCTCTACCGCC ACTGTAGCCTACTAGACTCCATTCTCATTTTTGTGTGTTGAAACTGGAAACTAGTTTTTTTTCAGACTGAATTGCCTTCT GCAGGTTGGTTTGCTAGGGATCCTAATATTTTGCGACGTGTTGGACATATACTTCTCCAAGCACCATTTGTAGTTCAACG CAGTCCTCGTCAAATAATTATAGCTGATGATTGTTTTCAACAGTTGAATGTTCCTCTTGATAGGAGTTCTCAGGTGGTGA TCCAATCCACTGAGAAGCTTTTTGGAAGTATGTTCTTTTGCTGTGTTCTAGTCATTATTTTTTTTTGAGAACAATGTTCT AGTCATTATTAACATCTCTTGTTGCTTTTTTCAGATACTTTACGTTTGCACATGAACTTATTCTGCTTTAATTTCTTTTT CTTTTTTCAACCAATTGTTTTCAGGACAAGTATTGAAGCATATAAATCTTGAGGAGTTTTTATGTAATAAACTTCCTAGT TTGAAAAAACTCTCTAGTCAGCAACAAAATGGTGAACTGAAAGCTCCTTCATTGAAGTCACTTGCAAAAATCATGCAGTT TCTGCAAAGGTTTGTGATTTCCTTATGATATGGTAATGTTATTATAATTTGCAATTTTATGACAACATTGAATGGAAAAG AATGGAGCGCCTTTATTCTTGATGCTCCTCACCAATTGTGTGTCAAATAAATTTTCCAACTATGTTCCTCCTGTCTGTTG ATGTTTAGTAATATAGTATGATTCTTTTATCAATTTATATGTACAGGCATGAATTTAGACTCACACATGAGGAGTGGATG AGTATAGTAAAGCCTGAGCTTCATCCAGCTGTCTCAGCAGATCTGCAAGAAAAGTTTGAGGTTTCTGATGTAGATGTTGA GAACTATAGATCTGTTAGAAATGAGATGCGTGATGCTGTCAATTCTCTTTTGAAGGTAAAGTGATGGTTTTACTCCGCTT TGCTTCCGACTCAAATCTTTCTCATTTAAATTAATCTTCATATTGTCTTGTTCCTATAATGGCTCTCATCTTCCTAAACA TTTTACCTTCTACATCTTTTGTTATCTTGCTGTGTTCTACAGTAAGTAGTAACTAAAATCATTACTTGATGCATGTTTGA GAATTTTATTTTTTAACTTGCACTTAGAGAATAGTATATTAGAGAAGAGAGCTTACAGTGATAGGATTTTCATGTGCAAT TCTTGGAACATTAAAAGCTCTATTCTAATTTTTACCAACTTATGAGGAATAATAACTGAAAAATTGACATCGAATATGAA AACTTGCTAACAAATTCCTGAAAAATATACTAACAGATCCTTCCTTATGACCCTCAACTAACATTGCAAGGTGCTCTTGG TATTCCCATAGTATCACGTGTGGCATGTGTGGTGCAAATTTCAATTTCTACGCAGCAGTATATTCTGATAATTTTGTTGT TGTAATCTTATTGCTATTTTATGCTTTAAGGATGAAGGAATATTGGTCATCCCAACTGTAGCTAATCCTCCTCCAAAATT GGGAGGGAAGGAGATCATATCAGAGGACTATCGGAGCAATGCATTAAGTCTGCTGAGTATTGCAAGCATATCTGGTTGCT GTCAGGTAAGATTCTTTCCTCCCTTCAAAACTTGGATAAGGTTATTTTATGCTATTCTTTTTTACCTCCTTTTATATAAT AAAGACCAAGCTTTATCTCACTTGGTGAGGTTAGATACATGGATTAGCCAACACCGTCAAGCTCTATTTAAAACCAAAAC AACCTTACCTTCTTGTTTTCCCTTACCTCTTTTTCTGGTACTGTTACAAGTGTTACCAAATCACACTCTTATGAATCTTA AATGATATTCTGATAATCATCCTTTCATTTCAGGTCGCAATACCATTTGGATTTTATGACAAGTGTCCAGTTTCAGTGTC CTTGATAGCCCGGCAAGGTGGTGATCGTTTTCTACTGGACACACTACAGACCATGTATTCAACTATCCAGGAGCAGGTTG AAATTGCTGCTGAAACTAAACTGTCAAGAAATGTTATTACTCAAGAACAATCTGCTGAAATTGCCAAAGAGAAGGTATTT GATGACATATTGACATGGAATGTTTTCAGCATTTATATGCATATGGTTGTGATTGTGCGATGTAACTGGCATTGTTTATC ACTAGATTATTGCTGATGTTAAAAACTAATCTGTTATAAACTATAGATCGTCTCTCATTCACAATCCTTCAACTTACCAG CAATTTTGGGTTTATTCATCACCTTTGTTTCTCTTACATTTTCATGGTGGACATGTATATTTCATTTATTGTTGATTTAA ATTACAACATTCCTGTATTATACACTATACAGAACTAACTGGCAGAAAGATAAGGTTGGATTATATGTAAAAGTTATCTT CTCCTTTATCCCTTTTCTTTTGGTTTGTTACTTAATGATTCAGGGAAACCAAGCCTACAAAGATAAGCAGTGGCAGAAAG CTATTGGATTTTATACAGAAGCTATCAAACTTAGTGGCAATAATGCAACATACTACAATAACAGAGCTCAAGCATTCCTA GAACTTGGGAGGTAGGGGATCATTCTGGCCAGTTCACTCTGCAAAAGTTATCTTGTAAACATTGTGATATTTTTCTCTCT GCTCATGCAGTTATCTCCAAGCAGAGGCAGATTGCACAAATGCAATTAGCATCGACAAAAAGGTGACCAATGTCTTCACA GAGAACTCTGTGCTTGAAATTTTTTATGTTCTTTGGTGATTGTTGTTCTTGTCGTGTAAGATATAACCAAATCCTGCATT TGCTCCGAAGTTCAAATATTCTTGTCTAATGAAAATCAAGACTTGATAGTTGAAGGACAATATTTGTATTCACAAACAAA ATTGTTTATGCAATTTTAATTGCATGCTCCCTTCTTGTAAAGCTCAATCTAACTTGCTCTGATTCCTGCGTATTCCATAT TTTCTGGGATGTGAGCTTTGCAGCTTGCAGTAACATTTCTTCCTTAATTTTATACAGAATGTGAAAGCCTATTTTCGTAG AGGTAGAGCAAGAGAGATGCTAGGCTACTACAAGGATGCAATTGATGGTAAGATCTTTCAGTTGTTTCACATTTGTGTGC ATCTTATCATTTTAAAATTGAATCAGGAATTAGAGATGATGGCCAATCTGTAGTGTTATTTACACAAAAACCAACCTATT TATTGTTTATGTGGTCATCCAAACAAGTTAATTCCTTTTTGTGAAGTTAGGTATGGTTATAACCTGAGCCTCATTGGCCA TAGTAAGATGAATTCTAGTTATGTGCTTTTACGAATTTCAAAATTCAGGCTCTTGAAAGGTATATAGTAATTCAAAGTTC AAATTCTTCTTAATTTGAAATGATTGCAAGGATATGTTTTGCTGAAGAACTACTTGAATGAAATATTCTAATTGTTTATA TATACGAGGATAGTCCCGTTAGTTTAGGTTTAGCAAATAGCAATCACTTAAAATAAGGAAAGAGTCTATCTATCATAATT AAGGTTATAACGATACAGTATACAAAATATATTTACTCCCTCTTTATTCTATTTACGACATAGCTCAACTGAACTCTTGG GCTGTTCAAACTTGGTAAGCTGCTAGAATTCAGATTATTTGTGAGAAAATGTGGGGCTATACTGTCAAAATTTTCGGATA TTAGACAGCTATGTATTCTTTTAAGTTCATTGTTGTTCTCATTTTCATATGAAATTATAGAATTTTCCAAATCATAGGTG TATTATTTTGCTTTGCAGATTTTAAATACGCCCTTGTACTTGAGCCGACCAACAAAATGGCAGCCTCAGCTGCTGAAAGA TTGAGGAAGCTATTCCGGTAGATACATGGGAAGGCTGAATAATTTAGTCTCTGCAGCCAAACACTCCACACTAATGATAC TGGTGATCCTATTCATTTCTAGTCACAATGCAGGATTACTACGATATGTGGTTTCTGCAAATGGTAGTGATTCTTTGTTC TTCATGCGAGGCAACTGTGTACATGGAAAGCTTGTTTTGCTCCTCCTCAGCACTGTTATCAGGATCTGCAACTAGTTCTA TTGCAGTATTGCCATAATTGAAATGTGGCCCAATTTTGCTCAGTTATTAAACATTCGGATTGTACTATAGCAGTCATGTG AGGCATATTTTTTATGACTACAGCTCACTTTGAATAAATGGGTGCAATGATCTTAAAAATAGATTATGCTATTAGTGGAT TTTGAATTGACTTCATGGAAGCACTTTATCAGTACATCATAATCTGGATTTGAAAAATTTAAGATATATCATTTAATCCG AAGTACATATCTGAATTTTGAACATTCATGATTAGATCTAATGATTATTATTTATTCCTACCATTTTCACATAAAAAGAC AATTCTCATATGATAAATCTCTCCTTAGTCTATTATGTGGGTTTCATCAGATCTAGTTCTTCCATCTGAGTTTTGGTGTC TTCTCCATCTTAATTTCCCCACTCATCTGGGTTTTATCAGATCTGATTCTCACATTGTTTATCATCTTATTCCATGGGTC TTATTGTCCATGGATTACCTCTAATTTCAGCACCGGAGAAATGACTAAAACTCTAAATGTAACTTGAAATTTATTTTATC TTAGTCTTCTCAAAC
CDS sequence (LotjaGi2g1v0197000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCTCAATCTACCAATCTATGGGTCTTGTTGGGACTTGGTTTGGCTGGAATCTTCCTCATGACCAGAAAGCTCAA GAAGCGTTCAATCAAGCAAGACTTTGGTGCTTTCATCCACAAGCTTCTGCTTCTTCCTCCTCCTCAACCTGCTCCTCCCA AAGCTCCTCACCCTCTCACTTCCCTCAACTTCGCCGTCTCTGACCTATTTGACATAGATGGACATGTGACCACGTTTGGG CATCCAGAGTGGGCAAGGACGCATGAAGCTGCTTCCCAGACATCACCTGTGGTTTCTGCTCTGGTTGAAGGAGGTGCAAC CTGCATTGGGACAACTGTTGTGGATGAACTGGCATATGGTATTAGTGGTGAAAATAAACAGTATGGAACACCAACTAATC CTGCTGTGCCTGCTCGGGTACCGGGTGGCTCCTCTAGTGGTGCTGCTGTGGCTGTTGCTTCTAATTTAGTTGACTTTGCA CTAGGTATTGATACCATCGGAGGGGTGAGACTACCGGCCGGATTTTGTGGCATTTTGGGATTTCGGCCTTCATATGGGGC TGTTTCTCATATTGGAATCATACCTGTTTCGAAAAGTCTGGAGACTGTTGGTTGGTTTGCTAGGGATCCTAATATTTTGC GACGTGTTGGACATATACTTCTCCAAGCACCATTTGTAGTTCAACGCAGTCCTCGTCAAATAATTATAGCTGATGATTGT TTTCAACAGTTGAATGTTCCTCTTGATAGGAGTTCTCAGGTGGTGATCCAATCCACTGAGAAGCTTTTTGGAAGACAAGT ATTGAAGCATATAAATCTTGAGGAGTTTTTATGTAATAAACTTCCTAGTTTGAAAAAACTCTCTAGTCAGCAACAAAATG GTGAACTGAAAGCTCCTTCATTGAAGTCACTTGCAAAAATCATGCAGTTTCTGCAAAGGCATGAATTTAGACTCACACAT GAGGAGTGGATGAGTATAGTAAAGCCTGAGCTTCATCCAGCTGTCTCAGCAGATCTGCAAGAAAAGTTTGAGGTTTCTGA TGTAGATGTTGAGAACTATAGATCTGTTAGAAATGAGATGCGTGATGCTGTCAATTCTCTTTTGAAGGATGAAGGAATAT TGGTCATCCCAACTGTAGCTAATCCTCCTCCAAAATTGGGAGGGAAGGAGATCATATCAGAGGACTATCGGAGCAATGCA TTAAGTCTGCTGAGTATTGCAAGCATATCTGGTTGCTGTCAGGTCGCAATACCATTTGGATTTTATGACAAGTGTCCAGT TTCAGTGTCCTTGATAGCCCGGCAAGGTGGTGATCGTTTTCTACTGGACACACTACAGACCATGTATTCAACTATCCAGG AGCAGGTTGAAATTGCTGCTGAAACTAAACTGTCAAGAAATGTTATTACTCAAGAACAATCTGCTGAAATTGCCAAAGAG AAGGGAAACCAAGCCTACAAAGATAAGCAGTGGCAGAAAGCTATTGGATTTTATACAGAAGCTATCAAACTTAGTGGCAA TAATGCAACATACTACAATAACAGAGCTCAAGCATTCCTAGAACTTGGGAGTTATCTCCAAGCAGAGGCAGATTGCACAA ATGCAATTAGCATCGACAAAAAGAATGTGAAAGCCTATTTTCGTAGAGGTAGAGCAAGAGAGATGCTAGGCTACTACAAG GATGCAATTGATGATTTTAAATACGCCCTTGTACTTGAGCCGACCAACAAAATGGCAGCCTCAGCTGCTGAAAGATTGAG GAAGCTATTCCGGTAG
Protein sequence (LotjaGi2g1v0197000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASQSTNLWVLLGLGLAGIFLMTRKLKKRSIKQDFGAFIHKLLLLPPPQPAPPKAPHPLTSLNFAVSDLFDIDGHVTTFG HPEWARTHEAASQTSPVVSALVEGGATCIGTTVVDELAYGISGENKQYGTPTNPAVPARVPGGSSSGAAVAVASNLVDFA LGIDTIGGVRLPAGFCGILGFRPSYGAVSHIGIIPVSKSLETVGWFARDPNILRRVGHILLQAPFVVQRSPRQIIIADDC FQQLNVPLDRSSQVVIQSTEKLFGRQVLKHINLEEFLCNKLPSLKKLSSQQQNGELKAPSLKSLAKIMQFLQRHEFRLTH EEWMSIVKPELHPAVSADLQEKFEVSDVDVENYRSVRNEMRDAVNSLLKDEGILVIPTVANPPPKLGGKEIISEDYRSNA LSLLSIASISGCCQVAIPFGFYDKCPVSVSLIARQGGDRFLLDTLQTMYSTIQEQVEIAAETKLSRNVITQEQSAEIAKE KGNQAYKDKQWQKAIGFYTEAIKLSGNNATYYNNRAQAFLELGSYLQAEADCTNAISIDKKNVKAYFRRGRAREMLGYYK DAIDDFKYALVLEPTNKMAASAAERLRKLFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 3 | 550 | 548 | 8.4E-248 | – | |
| Phobius | 6 | 23 | 18 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 24 | 591 | 568 | - | – | |
| SUPERFAMILY | 33 | 445 | 413 | 1.03E-76 | ||
| Gene3D | 48 | 466 | 419 | 3.8E-77 | ||
| Pfam | 53 | 209 | 157 | 2.1E-42 | ||
| Pfam | 350 | 442 | 93 | 5.6E-7 | ||
| Gene3D | 467 | 591 | 125 | 7.4E-40 | ||
| SUPERFAMILY | 473 | 580 | 108 | 5.96E-30 | ||
| ProSiteProfiles | 475 | 508 | 34 | 7.582 | ||
| SMART | 475 | 508 | 34 | 0.027 | ||
| ProSiteProfiles | 475 | 576 | 102 | 22.566 | ||
| ProSiteProfiles | 509 | 542 | 34 | 6.962 | ||
| SMART | 509 | 542 | 34 | 4.7E-4 | ||
| ProSiteProfiles | 543 | 576 | 34 | 11.092 | ||
| SMART | 543 | 576 | 34 | 4.9E-4 | ||
| Pfam | 544 | 576 | 33 | 1.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0197000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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