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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0226200 |
| Transcript ID | LotjaGi2g1v0226200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein 3; TAIR: AT4G29380.2 protein kinase family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54S77|VPS15_DICDI Probable serine/threonine-protein kinase vps15; TrEMBL-Plants: tr|A0A0B2PYS8|A0A0B2PYS8_GLYSO Putative serine/threonine-protein kinase vps15; Found in the gene: LotjaGi2g1v0226200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68335462..68339918) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTCAGCACATGATTCAGTTAGAACCAGAGTCTCGATTTTCTGCGGAAAGATACTTAAAGGAATATGCTGCAGTTGT ATTCCCAACCTATTTTTCGCCATTTTTGCATGATTTTTACCGTTGCTGGAGTCCTCTTCATTCTGATATGAGGGTATATG GCTTTACTGAAATATGTTTGTCATTAGTTATTTTATGCTTTCTCTAAAAAGCTCCCTCTATGCACAAGGTCCAGGGGGCC GGACCCACTTTGTGGGTCTAATGTATGCAGCCTTACCTTGCATTTTTGCATGTCACATGGCAGCAACCTTACCATTGCTC CGAGGTTCGCCCTCTCATTTGATGCTTTCTCTGACTTACTTATTTTGTATTGATACCGTGTGAACAATTTATGTAGGTTT TGCTATGCCAGAGTGCTTTCCAGGAGATACTGAAACAAATGATGAACACGCATTCATCTAATGATGCAGGTGTTACTTCT GGGGAACTTTTGGAAGAGATGTTTGCTAAAGAAAGTGTAAGTTTCATGAAGGACTCACTGATGAAAAGAGAGGACATAGG CAAAGGCTTAGTTCATGACAATTATGAACTTCTTGGTGATATTAATAGCCTCCTGAGGGATGCTAAAATAAATAAGTATC CATCTGGTCCCAGACATGTAACAGGAAATGCACACAATTCTACCTTTCCTGAAAATCTAAAAAGTTTGCAGTCGCCTGGT GAATTGCTTCAAACTATCTCCAATGCATTTCGAGGAAATGATCATCCCTTTCTGAAAAGTATTACCATGAATGATTTAAA TACATTGATGTCTGAGTATGATAGTCAATCAGATACATTTGGAATGCCTTTTCTGCCAGTACTAAAGGATAGCATGAGAT GCGAAGGCATGGTTTTGATAACTTCTTTGCTCTGCTCGTGCATACGCAATGTCAAGTTGCCTCACCTGAGGAGGGCTGCT GTACTCTTGTTGAAGGCTTCCGCCCTATATATTGACGATGAAGATCGTTTGCAGCGTGTTATCCCATATGTGATTGCAAT GATTTCTGATCCAGCAGCAATTGTTCGTTGTGCTGCTTTGGAGACTTTGTGTGACATTCTGCCCTTAGTGCGAGATTTTC CTCCCAGTGATGCAAAGATATTTCCCGAGTACATTCTTCCTATGCTCTCTATGCTTCCTGATGATCCAGAGGAAAGTGTG AGGATATGCTATGCCAGCAATATAGCTAAGCTGGCACTAACTGCTTATGGATTCTTGATACACTCAATAAGCTTGAGTGA GGCAGGTGTCCTTGATGAATTGAGTTCACCACAGAAGCCATTGATATCATCTACTCAGACCTCTGGAAGAGTGAAGAGGA TACATAGTGATGTCCAACTTTTGCAGCTGAGGAAATCAATTGCAGAGGTTGTCCAAGAACTTGTCATGGGTCCAAAGCAA ACACCAAATATTAGGAGAGCACTTCTTCAGGACATTGCTAAACTGTGCTACTTCTTTGGTGTGAGACAGAGTAATGACTC TCTCTTACCTATCCTTCCTGCTTTCTTAAATGATCGGGATGAGCAATTAAGGGCAGTGTTCTATGAAAAAATTGTTTATG TCTGCTTTTTTGTGGGTGAAAGAAGTGTTGAAGAATATCTTTTACCTTACATTGAGCAAGCTTTAAGTGACATGACGGAA GCTGTCATTGTTAGAGCATTAGAATGTTTGGCTATTCTATGCAAAAGTGGGTTCTTCCGGAAGAGGATATTGCTTCAAAT GATAGAACGTGCCTTTCCTTTGTTGTGCTATCCTAGTGAATGGGTACGAAGATCAGTGGTCTCTTTCATTGCTGCTAGCA GTGAAAGCTTAGGTGCAGTAGATTCTTATGTTTTTCTTGCTCCTGTTATACGGCCTTTCCTCCGTAGACAACCTGTGTCT CTTGCTTCCGAGAAAGCTCTTTTGTCATGTTTAAAACCTCGGGTTTCAAGACAGGTTTTCTATGAAGTCTTGGAGAATTC CAGGAGTTCAGACATGTTAGAAAGACAGAGGAAGATATGGTATAGTTCATCACAATCTAAGCTTTGGGAAATGGATTTAC TGAAAAAAGGAATTGATGAGTTGGACTCGTTAAAGAACTGGAGTGACAAGCAACAGGGTCCTGGGGTTCAACAAGCTGTT GGCACTGCCTTTCAAGAGCCAGGCCTAACTGATTGTGACAAAGCTGAGGCAAAATTGAGAGATATTGGGGCCTTTATGCA TAGTGATAGCAATATTGTGGGTCATCGTGATTCCCAGGGCTTGGAAAAGTTACAGTTTTCAGGGTTTATGTCACCAACTT TTAGTGGTGTGAACAGTTTGACATATGAAAAGCCATCAGAAGGCATACCTTTGTACTCCTTCAGTGTAGACAGACGAGGA ATGGGAATACCTCCTGCAGCATCTGATTCTCCTCTACAAATGAATTCTCTGGGTGTTAGTTCATCTGCGATGCCTTGGGT TAATCCACTTAGTAAGTCCTTTAGTTTGGCTAATTCAGTTCCAGCTCCGAAGCTATTTTCAGGTTCTTTCAGCATCACCA ATGGTTCAAAACAGTTCCACAGAGTGGTACATGAACCAGATTCCAGGGAAAATGAGCCAGCCTATGTTAATAGCACATTT CAAGACGCAGGATCATCTTCTAATAGTAAAGGTACTTCACTTTCACCAGAAGATGCTACTGCCCAAACTGATCTATCAGG ATTTTCATCTTTTGCTCGGACATCCATTCCCGATTCTGGTTGGAGGCCACGTGGGGTGTTGGTTGCACACCTCCAGGAGC ACCGTTCAGCTGTCAGTGACATAGCGATTTCTTCTGATCAAAGCTTCTTTGTGAGTGCATCTGATGACTCTACAGTTAAG ATTTGGGATTCCAGGAAACTGGAAAAAGACATTTCATTCAGGTCAAAGCTAACTTATCACCTGGAGGGAAGCCGTGCATT ATGTGCGGCAATGCTTCCAGGTTCTGCACAAGTAATAGTTGGAGCATCTGATGGATTTATTCATATGTTTTCTGTTGATC ATATCTCTAGAGGTCTAGGGAATGTTGTTGAGAAGTATTCAGGTATTGCTGACATCACAAAGAAGGATATTAAGGAAGGT GCCATACTCTGCCTTTCAAATTGCCCTCTGGATAATTATACCGTTATGTATAGCACCCAGAACTGTGGTGTTCATCTGTG GGATACTAGGTCAAATTCCAATACCTGGACCCTGAAAGCTACTCCTGAGGAGGGCTATGCTTCTTCTCTGGCATCAGGGC CTTGTGGCAATTGGTTTGTATCAGGATCATCCAGGGGTGTCATTACACTTTGGGATCTGAGGTTTCTTGTACCTGTGAAC TCTTGGAAGTGTTCTCTCTCTTGCCCTATCGAAAAGATGTGCCTCTTTCTTCCTCCGAATGCTTCTCTGTCTTCAACTGC TAGGCCCCTTGTTTATGTGGCTGCTGGCTCCAATGAAGTTTCTCTTTGGAATGCAGAGAATGGTAGTTGTCACCAGGTAT GGGGCCGTTTTAGTTGTTTATGGATAGTCAAAGCAGTATGTGCTACAACAAAACCCAGTGCAACTAATTTCTGTTTCAAC TATGTACTAGGAGCTTTGTATATTTTATAAATTATATGAGCTGGTTCCATGACGTTTATGACATGAACCTCTATCCAGGT TGCATAGAAGTTATAACTTCGTGGAATCACATGATATTTCATACTGATATTACTGTGATTATTGTTCTGTTCATTTAACA AATCTTCTTGCAGGTACTGAGGATGGCCAATTATGACAGTGATGCAGAAATGTCTGATCTGCCTTGGGCCTTATCCAGAC CTTCAACTAAGACAACTTCTCAATCTGATCCAAGACGAAATGTTAATCGCAAGTATGGAGTTGATGAGTTAAATGAGCCT CCTCCTCGTCTTCCTGGTATCCGTTCTTTACTTCCCTTGCCAGGGGGTGATTTATTGACTGGGGGCACTGATTTAAAGAT ACGTCGATGGGATCATTACAGGTTTGTGATGAATTTCAATCTTGCTTACTCGTTTTTCCTGCAAAACTGGTCTAATTGAA ATTGCCTATATTTTTTTTTGATCCAGTCCTGACAGAAGTTACTGCATTTGTGGACCAAACATAAAAGGAGTAGGAAGTGA TGATTTTTACGAAACAAAATCTAGTTTTGGAGTGCAAGTTGTACAGGTAATTTATGTTTCAGTAGATTGTTCAGAATATC GGCAGGCATAGATTTAACCTTCTTCTACTTTCATAAACAGGAGACAAAAAGACGTCCTCTTACAACCAAGGTGACAGCGA AGGCAATCCTTGCTGCTGCTGCTACTGATTCTGCCGGGTGCCATCGTGATTCTATTGTTTCTTTGGCTTCTGTTAAGTTA ACCCAGAGACTCTTACTGTCCAGTGGTAGAGATGGAGCCATCAAGGTCTGGAGATAA
CDS sequence (LotjaGi2g1v0226200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAGCACATGATTCAGTTAGAACCAGAGTCTCGATTTTCTGCGGAAAGATACTTAAAGGAATATGCTGCAGTTGT ATTCCCAACCTATTTTTCGCCATTTTTGCATGATTTTTACCGTTGCTGGAGTCCTCTTCATTCTGATATGAGGGTTTTGC TATGCCAGAGTGCTTTCCAGGAGATACTGAAACAAATGATGAACACGCATTCATCTAATGATGCAGGTGTTACTTCTGGG GAACTTTTGGAAGAGATGTTTGCTAAAGAAAGTGTAAGTTTCATGAAGGACTCACTGATGAAAAGAGAGGACATAGGCAA AGGCTTAGTTCATGACAATTATGAACTTCTTGGTGATATTAATAGCCTCCTGAGGGATGCTAAAATAAATAAGTATCCAT CTGGTCCCAGACATGTAACAGGAAATGCACACAATTCTACCTTTCCTGAAAATCTAAAAAGTTTGCAGTCGCCTGGTGAA TTGCTTCAAACTATCTCCAATGCATTTCGAGGAAATGATCATCCCTTTCTGAAAAGTATTACCATGAATGATTTAAATAC ATTGATGTCTGAGTATGATAGTCAATCAGATACATTTGGAATGCCTTTTCTGCCAGTACTAAAGGATAGCATGAGATGCG AAGGCATGGTTTTGATAACTTCTTTGCTCTGCTCGTGCATACGCAATGTCAAGTTGCCTCACCTGAGGAGGGCTGCTGTA CTCTTGTTGAAGGCTTCCGCCCTATATATTGACGATGAAGATCGTTTGCAGCGTGTTATCCCATATGTGATTGCAATGAT TTCTGATCCAGCAGCAATTGTTCGTTGTGCTGCTTTGGAGACTTTGTGTGACATTCTGCCCTTAGTGCGAGATTTTCCTC CCAGTGATGCAAAGATATTTCCCGAGTACATTCTTCCTATGCTCTCTATGCTTCCTGATGATCCAGAGGAAAGTGTGAGG ATATGCTATGCCAGCAATATAGCTAAGCTGGCACTAACTGCTTATGGATTCTTGATACACTCAATAAGCTTGAGTGAGGC AGGTGTCCTTGATGAATTGAGTTCACCACAGAAGCCATTGATATCATCTACTCAGACCTCTGGAAGAGTGAAGAGGATAC ATAGTGATGTCCAACTTTTGCAGCTGAGGAAATCAATTGCAGAGGTTGTCCAAGAACTTGTCATGGGTCCAAAGCAAACA CCAAATATTAGGAGAGCACTTCTTCAGGACATTGCTAAACTGTGCTACTTCTTTGGTGTGAGACAGAGTAATGACTCTCT CTTACCTATCCTTCCTGCTTTCTTAAATGATCGGGATGAGCAATTAAGGGCAGTGTTCTATGAAAAAATTGTTTATGTCT GCTTTTTTGTGGGTGAAAGAAGTGTTGAAGAATATCTTTTACCTTACATTGAGCAAGCTTTAAGTGACATGACGGAAGCT GTCATTGTTAGAGCATTAGAATGTTTGGCTATTCTATGCAAAAGTGGGTTCTTCCGGAAGAGGATATTGCTTCAAATGAT AGAACGTGCCTTTCCTTTGTTGTGCTATCCTAGTGAATGGGTACGAAGATCAGTGGTCTCTTTCATTGCTGCTAGCAGTG AAAGCTTAGGTGCAGTAGATTCTTATGTTTTTCTTGCTCCTGTTATACGGCCTTTCCTCCGTAGACAACCTGTGTCTCTT GCTTCCGAGAAAGCTCTTTTGTCATGTTTAAAACCTCGGGTTTCAAGACAGGTTTTCTATGAAGTCTTGGAGAATTCCAG GAGTTCAGACATGTTAGAAAGACAGAGGAAGATATGGTATAGTTCATCACAATCTAAGCTTTGGGAAATGGATTTACTGA AAAAAGGAATTGATGAGTTGGACTCGTTAAAGAACTGGAGTGACAAGCAACAGGGTCCTGGGGTTCAACAAGCTGTTGGC ACTGCCTTTCAAGAGCCAGGCCTAACTGATTGTGACAAAGCTGAGGCAAAATTGAGAGATATTGGGGCCTTTATGCATAG TGATAGCAATATTGTGGGTCATCGTGATTCCCAGGGCTTGGAAAAGTTACAGTTTTCAGGGTTTATGTCACCAACTTTTA GTGGTGTGAACAGTTTGACATATGAAAAGCCATCAGAAGGCATACCTTTGTACTCCTTCAGTGTAGACAGACGAGGAATG GGAATACCTCCTGCAGCATCTGATTCTCCTCTACAAATGAATTCTCTGGGTGTTAGTTCATCTGCGATGCCTTGGGTTAA TCCACTTAGTAAGTCCTTTAGTTTGGCTAATTCAGTTCCAGCTCCGAAGCTATTTTCAGGTTCTTTCAGCATCACCAATG GTTCAAAACAGTTCCACAGAGTGGTACATGAACCAGATTCCAGGGAAAATGAGCCAGCCTATGTTAATAGCACATTTCAA GACGCAGGATCATCTTCTAATAGTAAAGGTACTTCACTTTCACCAGAAGATGCTACTGCCCAAACTGATCTATCAGGATT TTCATCTTTTGCTCGGACATCCATTCCCGATTCTGGTTGGAGGCCACGTGGGGTGTTGGTTGCACACCTCCAGGAGCACC GTTCAGCTGTCAGTGACATAGCGATTTCTTCTGATCAAAGCTTCTTTGTGAGTGCATCTGATGACTCTACAGTTAAGATT TGGGATTCCAGGAAACTGGAAAAAGACATTTCATTCAGGTCAAAGCTAACTTATCACCTGGAGGGAAGCCGTGCATTATG TGCGGCAATGCTTCCAGGTTCTGCACAAGTAATAGTTGGAGCATCTGATGGATTTATTCATATGTTTTCTGTTGATCATA TCTCTAGAGGTCTAGGGAATGTTGTTGAGAAGTATTCAGGTATTGCTGACATCACAAAGAAGGATATTAAGGAAGGTGCC ATACTCTGCCTTTCAAATTGCCCTCTGGATAATTATACCGTTATGTATAGCACCCAGAACTGTGGTGTTCATCTGTGGGA TACTAGGTCAAATTCCAATACCTGGACCCTGAAAGCTACTCCTGAGGAGGGCTATGCTTCTTCTCTGGCATCAGGGCCTT GTGGCAATTGGTTTGTATCAGGATCATCCAGGGGTGTCATTACACTTTGGGATCTGAGGTTTCTTGTACCTGTGAACTCT TGGAAGTGTTCTCTCTCTTGCCCTATCGAAAAGATGTGCCTCTTTCTTCCTCCGAATGCTTCTCTGTCTTCAACTGCTAG GCCCCTTGTTTATGTGGCTGCTGGCTCCAATGAAGTTTCTCTTTGGAATGCAGAGAATGGTAGTTGTCACCAGGTACTGA GGATGGCCAATTATGACAGTGATGCAGAAATGTCTGATCTGCCTTGGGCCTTATCCAGACCTTCAACTAAGACAACTTCT CAATCTGATCCAAGACGAAATGTTAATCGCAAGTATGGAGTTGATGAGTTAAATGAGCCTCCTCCTCGTCTTCCTGGTAT CCGTTCTTTACTTCCCTTGCCAGGGGGTGATTTATTGACTGGGGGCACTGATTTAAAGATACGTCGATGGGATCATTACA GTCCTGACAGAAGTTACTGCATTTGTGGACCAAACATAAAAGGAGTAGGAAGTGATGATTTTTACGAAACAAAATCTAGT TTTGGAGTGCAAGTTGTACAGGAGACAAAAAGACGTCCTCTTACAACCAAGGTGACAGCGAAGGCAATCCTTGCTGCTGC TGCTACTGATTCTGCCGGGTGCCATCGTGATTCTATTGTTTCTTTGGCTTCTGTTAAGTTAACCCAGAGACTCTTACTGT CCAGTGGTAGAGATGGAGCCATCAAGGTCTGGAGATAA
Protein sequence (LotjaGi2g1v0226200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQHMIQLEPESRFSAERYLKEYAAVVFPTYFSPFLHDFYRCWSPLHSDMRVLLCQSAFQEILKQMMNTHSSNDAGVTSG ELLEEMFAKESVSFMKDSLMKREDIGKGLVHDNYELLGDINSLLRDAKINKYPSGPRHVTGNAHNSTFPENLKSLQSPGE LLQTISNAFRGNDHPFLKSITMNDLNTLMSEYDSQSDTFGMPFLPVLKDSMRCEGMVLITSLLCSCIRNVKLPHLRRAAV LLLKASALYIDDEDRLQRVIPYVIAMISDPAAIVRCAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVR ICYASNIAKLALTAYGFLIHSISLSEAGVLDELSSPQKPLISSTQTSGRVKRIHSDVQLLQLRKSIAEVVQELVMGPKQT PNIRRALLQDIAKLCYFFGVRQSNDSLLPILPAFLNDRDEQLRAVFYEKIVYVCFFVGERSVEEYLLPYIEQALSDMTEA VIVRALECLAILCKSGFFRKRILLQMIERAFPLLCYPSEWVRRSVVSFIAASSESLGAVDSYVFLAPVIRPFLRRQPVSL ASEKALLSCLKPRVSRQVFYEVLENSRSSDMLERQRKIWYSSSQSKLWEMDLLKKGIDELDSLKNWSDKQQGPGVQQAVG TAFQEPGLTDCDKAEAKLRDIGAFMHSDSNIVGHRDSQGLEKLQFSGFMSPTFSGVNSLTYEKPSEGIPLYSFSVDRRGM GIPPAASDSPLQMNSLGVSSSAMPWVNPLSKSFSLANSVPAPKLFSGSFSITNGSKQFHRVVHEPDSRENEPAYVNSTFQ DAGSSSNSKGTSLSPEDATAQTDLSGFSSFARTSIPDSGWRPRGVLVAHLQEHRSAVSDIAISSDQSFFVSASDDSTVKI WDSRKLEKDISFRSKLTYHLEGSRALCAAMLPGSAQVIVGASDGFIHMFSVDHISRGLGNVVEKYSGIADITKKDIKEGA ILCLSNCPLDNYTVMYSTQNCGVHLWDTRSNSNTWTLKATPEEGYASSLASGPCGNWFVSGSSRGVITLWDLRFLVPVNS WKCSLSCPIEKMCLFLPPNASLSSTARPLVYVAAGSNEVSLWNAENGSCHQVLRMANYDSDAEMSDLPWALSRPSTKTTS QSDPRRNVNRKYGVDELNEPPPRLPGIRSLLPLPGGDLLTGGTDLKIRRWDHYSPDRSYCICGPNIKGVGSDDFYETKSS FGVQVVQETKRRPLTTKVTAKAILAAAATDSAGCHRDSIVSLASVKLTQRLLLSSGRDGAIKVWR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1265 | 1265 | 0.0 | – | |
| SUPERFAMILY | 10 | 555 | 546 | 2.74E-33 | ||
| Gene3D | 204 | 579 | 376 | 6.4E-21 | ||
| Pfam | 259 | 287 | 29 | 9.6E-4 | ||
| ProSiteProfiles | 427 | 465 | 39 | 9.14 | ||
| MobiDBLite | 797 | 820 | 24 | - | – | |
| Gene3D | 809 | 1265 | 457 | 6.5E-88 | ||
| SMART | 843 | 882 | 40 | 7.1E-9 | ||
| SUPERFAMILY | 844 | 1265 | 422 | 7.63E-35 | ||
| Pfam | 846 | 882 | 37 | 2.3E-6 | ||
| ProSiteProfiles | 850 | 1040 | 191 | 14.107 | ||
| ProSiteProfiles | 850 | 882 | 33 | 14.953 | ||
| SMART | 893 | 930 | 38 | 9.8 | ||
| SMART | 990 | 1031 | 42 | 0.36 | ||
| MobiDBLite | 1109 | 1145 | 37 | - | – | |
| MobiDBLite | 1111 | 1127 | 17 | - | – | |
| SMART | 1137 | 1171 | 35 | 140.0 | ||
| SMART | 1225 | 1265 | 41 | 2.5 | ||
| ProSiteProfiles | 1232 | 1265 | 34 | 9.362 | ||
| ProSiteProfiles | 1232 | 1265 | 34 | 9.506 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0226200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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