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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0244000 |
| Transcript ID | LotjaGi2g1v0244000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase DB10; TAIR: AT5G14610.2 DEAD box RNA helicase family protein; Swiss-Prot: sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46; TrEMBL-Plants: tr|K7KNL8|K7KNL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0244000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70765907..70772067) extracted from Lotus japonicus Gifu genome v1.2.
TTCATACAACCCAAGACAATCATAATTTTGGTTAAGTTGGGTCAGGCCTAGACATGATCCAGCAGCCACCATCCATCCAA ATCCAATACAATCAAACTGGGCCTAATGACACTCAACCATAGTCAAGAATCCAAACTTCCAACAGCTAACCATAGTCACT CACCCATAACCCAACCTTTCACTTTCCCTTATAATAATATCTTCTTCATTTCTACTTCCACCTATAAATAACCAAACGAT CATTCATCGCTGCTGCTTCCTCTTCCTCTCACCCTCGACCGTTTCCGACGTGTGCCGCAGGGGTTTGCGATTCGAAGCCG AACCCTGAATTGGAGATAGAGAGAGAAACACCAGTTTCTAGAGAGAGAAACACCCACTTCTCGCTCATCTACAGGTACCA TTCGATTCGATTCGGTTTTCGTTTGAATTGATTTTTTTCCTCTGTGTTAATTGCGCGCATTGCTTGCACCGTTCCATTAC GAGCTAGATCTGAGTGTGAATTTCTAGGGTTTGCTTGTTGGGAAACACTGCTACCCCATGCTGGGTTGTGATTTTGATTG AATCTAGGGCTTGGTTTATTGAAATAGTTTTGTGCTGCATGCATTTGTTTGAGCTTGATTTGGGTTTTCTGGTCGCGATT TTTGTAATCAGAAGTGTTTTATACGCTGGATTGATAACTTGCTTTTGTTCATGGTGTGAATCGGTCGCTTGTTTTGCTCA ACGTACTGTGTAAACTTACAAATTTGAAGTTGTTGCTTGGTTAGATTTGCTGGGATTTTTCTTTCTAGATATGCGGGGAA ATGTTTGATTTGTGGGCAATAATAGATGTTATGAATTTATAGAATCGAATGTTTTAATTTGAGGATGTAACTTTTGCTAG GGTCACTGTGAAAATGAAATATAATTGCTCTTTTAGGGTTCTTATTACTGTAATAATTTTTTATTTTAGTTTTTGGTGTG GTTTCTGATTGTGTTTTTATTCTGTTTGTCTTGTTAGAATTATATTTTCGATTCACTTGCTATGGCCGCCACAGCTACTG CCACAGTGGGTCCGCGATATGCACCACCCGACCCGACTCTACCTAAACCATGGAGGGGTCTTGTGGATGGCAAGACTGGG TATCTTTACTTTTGGAACCCTGAGACTAATGTTACCCAGTATGAGAGGCCTACAAGCTCCGCTGCCCCGCCAAAGTCTTC GGTGCCCAGTTCTTCTGTCCAGGTTCAACAATCATCTCAGCGTGCTCGCAGTCCGGATTTGAAGGACAGGTATGATAGAA ATGGAGGTGGTGGGTCAAATGACAGTGGATCACGGAACCATCAGGTTAGTGCTCGACTTTCTCTGTTGTTATTTGGACAT GTTAATATTTGAAACCTAGCATAACCTGTAGCACTTGGAATTTTTAGACATAGACTGTATGGTGTATTCTACCAATTGGT ATGTCATTTGCTATCAGTGATTTTTATGCATCTTTTATGTTCATTTTGAATCATTAGTTCCGTTATCCTTATGAGTCTTG TAAATAATGGGGAATGAGATGATGTTTGTCTTATTGAACTAAAACATTATTCACTAAACTTGTATTGAATAATTTCATTA TCTTTTTTCTTAAATGGACGCTAAAGATGTTTGGAAATTATATCTACTATACACCATGCTGCTAGAATAAAAAGAAGGCA GTGTTTAAGATTTAGCTGTACATTTTTCTCAATCCTAGTCTGTCTGGGGATTTATTTTACTTTTGTTTTGTATTAGAGTT CCAAAGAGGGAAGTTTTAGTTCTCATCCAAATGGAACACATGCTACTGGAAATGTTAGTTCTGTCAAAGATCAAGGGGCA TCAGATGCTGGAGCTGGACTAAGCCCAGAGTCTTATCGGCGTCGGCATGAAATAACTGTTTCTGTAAGTATATATTGGAT TTTTTGTGGCAAGTAATTATATCACACTGCTATAATTTTGAACTGTACATTATATATATTTATATTACACTACTCTGTTT CATGAACTGGACATCTTGCATCTGTTATCAACCTTGGTGATGCAAAAAATTATTCCCTTACATCTTTTAAGAATATATTT GGAAAATGTGTCCCCACAATTAAGTTTTTCTTTTTTTCCCCTCTTAATGTTTCTAGGGAGATAATGTGCCGCCACCTTTT ACATCATTTGGGTCCACTGGCTTACCACCGGAAATTCTTAAAGAGGTATCAGCTTCTATACTCTTTTTTTCACATCTTTC TTCAGTAGTGGCAGTTAGGAGGTTATGGAAGTTTCTGATCCTGTTGTTTCTTGCGCAAAACTCTGATTCCTGAAGCTCTA ATTTTTAAGTTTCAGGCTCATGATGATTCTTTTGCCATCTTTACTTTTTTTTTTCGTAGGTGCGATATTTGCTCCTGGAG AAGGAGCTAATGTCGTACACTGTGGTGCCCTCTTTTGTGGGGCTTGCATTTAGTTTGGACTTTGGAGCGCCCTTTATGGT GGACCAATTGTTTGGAAGGGCTTTCCGAATCATCCAAGTTCGTGGCTGGGACTGCCGTTGGTCATGATTCAGTCTGCCAC TTGGTCTGTTCGGAAGAAGAGGCCTCCTCATGCGCTAGCTTGCATCAGCAAGCAATGGTGGCTTGCATATGGGGGGATGA TGCTTCTTCCGGCAATAACCACTCCTCTATAAGTCCCAAATGAAACCAATCTCCTGGATTTTCCTTTTTTAGGTACAAAA TGCTGGGTTCTCAGCCCCTACTCCAATTCAGGCTCAGTCATGGCCCATTGCTCTTCAAAGCAGAGATATAGTTGCCATTG CAAAAACAGGTTCAGGGAAAACTTTGGGATATTTAATCCCAGCATTTTTTCACCTCAAGCGTACTGGCAATAACTCCAAA ATGGGTCCAACTGTTTTGGTACTTTCACCAACTAGAGAGTTGGCAACGCAAATACAAGATGAAGCTGTGAAGTTTGGGAA ATCATCTAGAATTTCTTGTGTGGTAAGTAACTATCTGCTCTTTTTCTTTTGGACTTCTTATATCTTCCTTTCATGTAAGA TGTACACTGAGATTATTGTTTCACTTCACTGAAATTTGAGATTGTGAAACAAATTTTGCTTGAAGCATAATTCTTCATTG GATTGCTTGTTCTAGTAGGTTCCTATAGTTAAACTGATCTAGAATAAAACTGGCTGCTATTTAGTGTCCTATGCTGGGTT TGCTTATAATTATTTATTAATTAACTATTATTTTTTCCCTAGTGTTTGTATGGAGGAGCACCAAAGGGTCCTCAGTTGAG AGATATTGAACGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATAAGTC TTCATCAAATCTCTTACCTTGTGCTAGATGAGGCAGACAGAATGCTTGACATGGGTTTTGAACCTCAAATTAGGAAGATT GTGAATGAGGTGCCTGCACGCAGGCAAACTCTCATGTATACTGCGACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGA TCTGCTGGTCAATCCTGTTCAGGTTAACATCGGAAATGTAGATGAGCTTGTTGCCAACAAATCCATTACCCAGGTTTTAT AATGCCTTTTTAGCCTATATCATTTACTTCATTCAATTACTATTTTTTCTTTAGACCCTCTATTACTATCAGAGGATTGT TATTAACTGTGATCAATCCATTTTTAATGTTATTAAAACAGCATATTGAAGTATTGCCACCAACAGACAAACACCGTCGA CTGGAGCAGATTTTGCGGTCTCAGGATCAAGGATCCAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACT TGCTCGTAATCTTACGCGCCAGTTTGGAGCTGCTGCTATACACGGGGACAAATCCCAGGCTGAGAGGGATCATGTGTTGA GTCAGTTTCGAACTGGGAGGTCTCCGGTGCTTGTAGCCACTGATGTTGCAGCTCGAGGACTAGACATTAAAGACATTAGG TTGGTAACTATTTGGGTTCATTGTGTTGTTTATTATTCCGAGGCCATTATGTTGATACACTACTTAGTTCACTGACACTG TGCATGCTGAAGTATTATGTTTTTCCATGAATGTTTACTGGATGTACTTTATTGTTTAGGACTAATGAGAACACTGACCA TAAATGTTTTTCAGGGTGGTTGTCAACTATGACTTTCCTACTGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGG GAGGGCTGGAGCCACTGGTTTAGCTTACACTTTCTTTGCGGAGCAGGATGCTAAATATGCTTCAGATTTGATCAAAGTCT TGGAAGGTGCAAACCAGCGTGTCCCGTCAGAACTTCGTGATATGTCAACACGGGGTGGTGGGATGAACAGATCCAGACGC TGGGGTTCAGGTGGACGGGGTGACTCTGGATATGGCGCAAGGAATGACTCTGGATATGGTGGAAGAGGTAGTGATTCTGG ATATGGTGGAAGAGGTGGGTTTGGGACTGCTGCTTCTGGCAGGGGTGGAGGCCGTGGATTTGACAATGATTCACAAAGGT TAGTTTAATTTATTTTTAGTTACATTTTTTTCTATTTTTCACTTGAAAAACTTAGTGCCTTATTACATATGTAAGAGGAA TTGGGTTTTGTAAAAGAATCCTCGCATTCTTGAGTAATGGTCACAAATGTGTTGTCTGGTGGTATAGGAATGATCGTGGT CGAAGTCCTGAGAGGGGTGGTTCTAGCTGGAGTGATCGCTTCAAAAGTGGTGACCGCGATCGTAGTCGTAGTCCTGACAG GGCTGCACCATCTCAAAATACTCAATTCAGCTTTCACCAAGCAATGATGGAACGACGTGGAGGGGATAGTGATCGTAGTA AGAGCCTTAACCGTGACCGTAGTCGCAGTCCTGGTCCTCATAAACAGGAGAGGGCCCCAGCAGTTCGTGAAGGTTACAGT TTTCATGGATCAATGATGGGACAAGGGCAGCGTGATGACAGTCGTAAATCTGCACGTAGTCCTCACCGAAGTTCACCATC CTCCCCTGGTGGTGGTAGGTCTAACAATAACCCTCAGAAAGGGTGGGGAGGATCTCATCCTTCTTACAATGGAGAAGTGG AGGAAGGGATGATTCCTGAAGAAGGAATGATATGTTAAGGATTTGGCTATCCCTGCCATGATGCGATATGTTAAGGTTTG CACATGTTGAAGGTTATTTTGCTCAAGGCATTGCTGCTTGAACACAGGTAATTTAGGATATGGTAGTGGAATTCATGGTA AATGTATATTTTGTGGGGCTTAGCAGAAGCCTCAAAATGGCATAGGTGAAGAACCTAGTATCGAATATGTTATGTTTTTG TTATTTTGGGAAAAGTCGAGTTTATATGGAACCTTTGCTAACTTTATGTTTCCAGACAATGAGGACTGAAATTAATCAGA CACTAAAGTATTTGTATACTTTGTTTTGGGTAAAGAAAGTGGTGAACAAATTTGACGCTCTTATTATTTTGGGTGATTAT TTACCATCTGTCTCTACAGGCTTCGGCCTTAATTTTCTAGTTTGTTGTTGTCTTTTAAATGTGTGAAGGGCTGGTGAACT TATTTGTTAAATATACTCTTAATTGTTTTAATTGGGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATAT GGTATCAGAGCCTATCCTAGATCTAGTTGTTGTTTGTTGTGGAGACCTCCCATTATTGGGCCACCCGTTGTTGTTGATCC CACGTTCCAGGTTGTTCAGTCGTGGACGTGAGGGGGTGTGTTAGAAGTTCCACATTGGCTAGAGATAGAACATAGATAGC CTTTATAAGGGTAGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATAACTTG AAAGTAGGAGAAATTGTATTATTACTTCTTAATCATAATACAAAGGGTAATTACATTATATAGAAGAAGACTAATCCTAA ATAAGGAAATAACTAATTATGTACACAATCTCCTAATAAGAGAATAATTCTCCTAATACTGAATATAATCTTCTAATAAT AATTCTTATATTAATTCCTTATTTACAACACCCCCCCTCAAGCTGGTGAATGAATATCTATCATTCCCAGCTTGCAAGTA A
CDS sequence (LotjaGi2g1v0244000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCACAGCTACTGCCACAGTGGGTCCGCGATATGCACCACCCGACCCGACTCTACCTAAACCATGGAGGGGTCT TGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAACCCTGAGACTAATGTTACCCAGTATGAGAGGCCTACAAGCTCCG CTGCCCCGCCAAAGTCTTCGGTGCCCAGTTCTTCTGTCCAGGTTCAACAATCATCTCAGCGTGCTCGCAGTCCGGATTTG AAGGACAGGTATGATAGAAATGGAGGTGGTGGGTCAAATGACAGTGGATCACGGAACCATCAGAGTTCCAAAGAGGGAAG TTTTAGTTCTCATCCAAATGGAACACATGCTACTGGAAATGTTAGTTCTGTCAAAGATCAAGGGGCATCAGATGCTGGAG CTGGACTAAGCCCAGAGTCTTATCGGCGTCGGCATGAAATAACTGTTTCTGGAGATAATGTGCCGCCACCTTTTACATCA TTTGGGTCCACTGGCTTACCACCGGAAATTCTTAAAGAGGTACAAAATGCTGGGTTCTCAGCCCCTACTCCAATTCAGGC TCAGTCATGGCCCATTGCTCTTCAAAGCAGAGATATAGTTGCCATTGCAAAAACAGGTTCAGGGAAAACTTTGGGATATT TAATCCCAGCATTTTTTCACCTCAAGCGTACTGGCAATAACTCCAAAATGGGTCCAACTGTTTTGGTACTTTCACCAACT AGAGAGTTGGCAACGCAAATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCTAGAATTTCTTGTGTGTGTTTGTATGG AGGAGCACCAAAGGGTCCTCAGTTGAGAGATATTGAACGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATG ATATTCTTGAGATGAGAAGAATAAGTCTTCATCAAATCTCTTACCTTGTGCTAGATGAGGCAGACAGAATGCTTGACATG GGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCTGCACGCAGGCAAACTCTCATGTATACTGCGACATGGCC TAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTTAACATCGGAAATGTAGATGAGCTTGTTG CCAACAAATCCATTACCCAGCATATTGAAGTATTGCCACCAACAGACAAACACCGTCGACTGGAGCAGATTTTGCGGTCT CAGGATCAAGGATCCAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACGCGCCA GTTTGGAGCTGCTGCTATACACGGGGACAAATCCCAGGCTGAGAGGGATCATGTGTTGAGTCAGTTTCGAACTGGGAGGT CTCCGGTGCTTGTAGCCACTGATGTTGCAGCTCGAGGACTAGACATTAAAGACATTAGGGTGGTTGTCAACTATGACTTT CCTACTGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTTTAGCTTACACTTTCTT TGCGGAGCAGGATGCTAAATATGCTTCAGATTTGATCAAAGTCTTGGAAGGTGCAAACCAGCGTGTCCCGTCAGAACTTC GTGATATGTCAACACGGGGTGGTGGGATGAACAGATCCAGACGCTGGGGTTCAGGTGGACGGGGTGACTCTGGATATGGC GCAAGGAATGACTCTGGATATGGTGGAAGAGGTAGTGATTCTGGATATGGTGGAAGAGGTGGGTTTGGGACTGCTGCTTC TGGCAGGGGTGGAGGCCGTGGATTTGACAATGATTCACAAAGGAATGATCGTGGTCGAAGTCCTGAGAGGGGTGGTTCTA GCTGGAGTGATCGCTTCAAAAGTGGTGACCGCGATCGTAGTCGTAGTCCTGACAGGGCTGCACCATCTCAAAATACTCAA TTCAGCTTTCACCAAGCAATGATGGAACGACGTGGAGGGGATAGTGATCGTAGTAAGAGCCTTAACCGTGACCGTAGTCG CAGTCCTGGTCCTCATAAACAGGAGAGGGCCCCAGCAGTTCGTGAAGGTTACAGTTTTCATGGATCAATGATGGGACAAG GGCAGCGTGATGACAGTCGTAAATCTGCACGTAGTCCTCACCGAAGTTCACCATCCTCCCCTGGTGGTGGTAGGTCTAAC AATAACCCTCAGAAAGGGTGGGGAGGATCTCATCCTTCTTACAATGGAGAAGTGGAGGAAGGGATGATTCCTGAAGAAGG AATGATATGTTAA
Protein sequence (LotjaGi2g1v0244000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATATATVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTSSAAPPKSSVPSSSVQVQQSSQRARSPDL KDRYDRNGGGGSNDSGSRNHQSSKEGSFSSHPNGTHATGNVSSVKDQGASDAGAGLSPESYRRRHEITVSGDNVPPPFTS FGSTGLPPEILKEVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFFHLKRTGNNSKMGPTVLVLSPT RELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIERGADIVVATPGRLNDILEMRRISLHQISYLVLDEADRMLDM GFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLPPTDKHRRLEQILRS QDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDF PTGVEDYVHRIGRTGRAGATGLAYTFFAEQDAKYASDLIKVLEGANQRVPSELRDMSTRGGGMNRSRRWGSGGRGDSGYG ARNDSGYGGRGSDSGYGGRGGFGTAASGRGGGRGFDNDSQRNDRGRSPERGGSSWSDRFKSGDRDRSRSPDRAAPSQNTQ FSFHQAMMERRGGDSDRSKSLNRDRSRSPGPHKQERAPAVREGYSFHGSMMGQGQRDDSRKSARSPHRSSPSSPGGGRSN NNPQKGWGGSHPSYNGEVEEGMIPEEGMIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| SUPERFAMILY | 12 | 52 | 41 | 3.42E-8 | ||
| Gene3D | 16 | 68 | 53 | 4.3E-6 | – | |
| ProSiteProfiles | 18 | 52 | 35 | 11.191 | ||
| SMART | 19 | 52 | 34 | 2.5E-5 | ||
| CDD | 21 | 51 | 31 | 3.17473E-4 | ||
| ProSitePatterns | 24 | 50 | 27 | - | ||
| MobiDBLite | 47 | 140 | 94 | - | – | |
| MobiDBLite | 47 | 75 | 29 | - | – | |
| MobiDBLite | 90 | 127 | 38 | - | – | |
| PANTHER | 91 | 696 | 606 | 4.9E-269 | – | |
| PANTHER | 91 | 696 | 606 | 4.9E-269 | – | |
| Gene3D | 134 | 366 | 233 | 2.2E-86 | – | |
| ProSiteProfiles | 159 | 187 | 29 | 11.8 | ||
| CDD | 170 | 365 | 196 | 4.98505E-106 | – | |
| SMART | 178 | 381 | 204 | 3.0E-65 | ||
| Pfam | 183 | 353 | 171 | 1.6E-49 | ||
| ProSiteProfiles | 190 | 364 | 175 | 30.34 | ||
| SUPERFAMILY | 231 | 515 | 285 | 4.3E-75 | ||
| ProSitePatterns | 310 | 318 | 9 | - | ||
| Gene3D | 367 | 540 | 174 | 4.2E-60 | – | |
| CDD | 378 | 507 | 130 | 6.993E-63 | – | |
| Pfam | 390 | 498 | 109 | 4.6E-34 | ||
| ProSiteProfiles | 393 | 537 | 145 | 25.855 | ||
| SMART | 418 | 498 | 81 | 4.2E-34 | ||
| MobiDBLite | 530 | 750 | 221 | - | – | |
| MobiDBLite | 596 | 631 | 36 | - | – | |
| MobiDBLite | 649 | 680 | 32 | - | – | |
| MobiDBLite | 706 | 729 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0244000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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