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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0263600 |
| Transcript ID | LotjaGi2g1v0263600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-type E3 ubiquitin ligase; TAIR: AT3G29270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|C6TIH4|C6TIH4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0263600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73296677..73297477) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGAACTTTGCATCAAACTGCATTGCTGGAAATGTGGAACTGAAAAATGATTCTTCAAAGCTAACTCATTCTGGTTC GGAATGTTCTGATGACGAGACTTCTGTTGTGGGCAGAGAGGAAGGACTGGAATGCCCGGTATGCTGGGAATCTTTCAATA TTGTGGAAAATGTACCCTATGTTTTATGGTGTGGCCATACCCTTTGTAAAAATTGTATCCTCGGATTGCAATGGGCTGTT GTGAAGTTTCCGACGTTGCCAGTTCAACTTCCGCTTTTTATCTCCTGCCCATGGTGCAACCTTTTATCCTTTCGTTTAGT TTATCGGGGAAATCTTAAGTTCCCTCGCAAGAACTACTTCCTTCTTTGGATGGTTGAGAGCATGAATGGCGATAGAGTAA AATCACATTCAACTTTCTGTGGGGATAATCAACAAAACTGGCCAATCAAAGACAACTCAACCACAGGAAGCCAGGTATAC AATGGTAGCCTTCGGAGGGGGCAAGTTCGCCAGCCAGAGACACATAATTCCATTCAGTATCATGGTCATACTGGCAACTA CCTCAGTATGCAAAGATTGCATATTTCTCTGCGAAAGTCACTGATTTTCTTTGTCCAGTTAACAGCTAAGTTTCCATTGG TCATCATATTTCTTTTGATTATTTTGTATGCAATACCAGCCAGTGCAGTCATTTTGGCTCTGTATATACTCATTACAATT CTGTTTGCTCTCCCATCATTTCTCATCTTGTACTTCTCATATCCTAGTTTGGATTGGCTTGTCAGGGAAATCATCACCTG A
CDS sequence (LotjaGi2g1v0263600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAACTTTGCATCAAACTGCATTGCTGGAAATGTGGAACTGAAAAATGATTCTTCAAAGCTAACTCATTCTGGTTC GGAATGTTCTGATGACGAGACTTCTGTTGTGGGCAGAGAGGAAGGACTGGAATGCCCGGTATGCTGGGAATCTTTCAATA TTGTGGAAAATGTACCCTATGTTTTATGGTGTGGCCATACCCTTTGTAAAAATTGTATCCTCGGATTGCAATGGGCTGTT GTGAAGTTTCCGACGTTGCCAGTTCAACTTCCGCTTTTTATCTCCTGCCCATGGTGCAACCTTTTATCCTTTCGTTTAGT TTATCGGGGAAATCTTAAGTTCCCTCGCAAGAACTACTTCCTTCTTTGGATGGTTGAGAGCATGAATGGCGATAGAGTAA AATCACATTCAACTTTCTGTGGGGATAATCAACAAAACTGGCCAATCAAAGACAACTCAACCACAGGAAGCCAGGTATAC AATGGTAGCCTTCGGAGGGGGCAAGTTCGCCAGCCAGAGACACATAATTCCATTCAGTATCATGGTCATACTGGCAACTA CCTCAGTATGCAAAGATTGCATATTTCTCTGCGAAAGTCACTGATTTTCTTTGTCCAGTTAACAGCTAAGTTTCCATTGG TCATCATATTTCTTTTGATTATTTTGTATGCAATACCAGCCAGTGCAGTCATTTTGGCTCTGTATATACTCATTACAATT CTGTTTGCTCTCCCATCATTTCTCATCTTGTACTTCTCATATCCTAGTTTGGATTGGCTTGTCAGGGAAATCATCACCTG A
Protein sequence (LotjaGi2g1v0263600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWNFASNCIAGNVELKNDSSKLTHSGSECSDDETSVVGREEGLECPVCWESFNIVENVPYVLWCGHTLCKNCILGLQWAV VKFPTLPVQLPLFISCPWCNLLSFRLVYRGNLKFPRKNYFLLWMVESMNGDRVKSHSTFCGDNQQNWPIKDNSTTGSQVY NGSLRRGQVRQPETHNSIQYHGHTGNYLSMQRLHISLRKSLIFFVQLTAKFPLVIIFLLIILYAIPASAVILALYILITI LFALPSFLILYFSYPSLDWLVREIIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 7.4E-142 | – | |
| Phobius | 1 | 87 | 87 | - | – | |
| PANTHER | 1 | 266 | 266 | 7.4E-142 | – | |
| Gene3D | 34 | 138 | 105 | 1.8E-11 | ||
| SUPERFAMILY | 40 | 103 | 64 | 2.54E-10 | – | |
| Pfam | 45 | 86 | 42 | 6.5E-8 | ||
| ProSiteProfiles | 45 | 100 | 56 | 10.144 | ||
| ProSitePatterns | 64 | 73 | 10 | - | ||
| Phobius | 88 | 108 | 21 | - | – | |
| Phobius | 109 | 200 | 92 | - | – | |
| Phobius | 201 | 225 | 25 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 226 | 230 | 5 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 231 | 252 | 22 | - | – | |
| Phobius | 253 | 266 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0263600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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