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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0273100 |
| Transcript ID | LotjaGi2g1v0273100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G22960.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960, mitochondrial; TrEMBL-Plants: tr|A0A1J7HQM4|A0A1J7HQM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74394886..74400414) extracted from Lotus japonicus Gifu genome v1.2.
CTTGGTTTGGTTGAATGATCACAAATCAAACTTGAATCCAACAAGAAAAGTGAGCATTTAACCAAAAGAAGAAAAAACTT GACAAGGATATAGGCACAACGTGTTCGGGTTGTAAAAGAGGCTCCGAAAATGCCACGGGTGCGGGTGTTTCACTCGTTTT TTCCACTCCCACACCAAACCCATCACAACACCCTAAAACCTGCACCACCGTCCCCGCCACTCAGCCGCCGTTGATTGATG GCATCGCCGCCACCACCGCCCAATCAATGACCCTCTCTTTCAGATTCTTCTCCACTCCAGCAGCCACAGCCCTCAAATCT CGCTTCCTCTTCTCCTTCAGCACATGCTCCTCAACCCACCACGACGCCGTTTCACGCCCTTCCCCCGTTTCCGATCACTT GCGCGCCGCGGTTTCCCAGCCTGAGCTTCTCGTCCGGGTCCTCCACTCGGTCCGAACCCGACCCGGAACTGCTCTCAGAT TCTTCCGTTGGGTCGAGAGGCAACCCGGGTTTACTGGGTCTGAATCGGCGTTCGCCGCCATCCTCGATATTCTCGCCAGG AACGGTTGGATGAGGTCTGCGTATTGGGTCATGGAGAAGAATGTGGTTGCTGTGAAAATGGAGGATGCTGTCATGGATGT TTTGGTTAGTGGTTCTTCTTCTTCTTCTTCTTCTTCTTCGGTTAAGCTTCTTGATTTGTTGCTTTTTATTCTGTCGAAAA AATCGATGCTCGAGAAGTGTTTGTTGGTTTTCTACAAGATGATTCATAATGGGTTGTTACCTGGTGTGAGGAATTGCAAT AGGGTTCTTAGGATGCTTAGGGATAGGAACATGGTGAATGAAGCTAGTGAGGTTTTTAATGTGATGATTGAGTGTGGGAT AAGACCTACCACTGTTACTTATAACACCTTGATGGATTCGTTTTGCAAGGAAGGGGAGGTTCAGCGCGCGGTTGAGCTTC TCACTCGAATGCGGCTAACCAGGTGTGCTCCCGATGATGTGACGTATAATATTTTGGTGAATGGTTGGTCTAACAAAGGG GAGTTGGAGCAGGCGAGGAAACTGATTGAGGAGATGTTGAAATTGGGGCTGAAGGTTTCGGCTTACACGTATAACCCGCT GATTCGCGGGTATCGTGAGAAAGGGCTGCATGAGGAAGCAGCGGATGTATGGGAGATGTTGGATAGAGAAGCTTTGTCTA CTGTGGCGACCTACAATACGATTATGTGTGGTCTTTGCAAGTGTGGAAGGGTGAGTGATGCAAGGCCGCTGTTAGATGAT ATGATGAATAAAAATGTGATGCCGGACTTGGTTTCCTATAATACTCTAATTTATGGTTACAGCAGGTTGGGCAACATGGG GGAGGCTTTTCACTTGTTTGATGAGTTGAGATATAGAAGTCTTGTTCCCACTGTTGTGACCTATAATACGCTTATAGACG GTCTTTGCAGATTGGGGGACATGGATAAAGCCAGGCGGTTAAAAGATGATATGATCAGACACGGACCTCATCCTGATGTA TTTACTTTTACAACTCTTGTCAGAGGATTTTGCATCACGGGGAACTTACCAATGGCTAAGGAGCTATTTGAAGAGATGCT TCATAGAGGATTGCAGCCAGATCGTCTTGCATACACAACTCGGATAGTGGGTGAACTGAAACTTGGTGACCCATTTAAGG CTTTTGGTATGCAGGAAGAAATGCTTGCCAACTTTCCTCCTGATTTGATCGTATATAATATCTTCATCGATGGGCTTTAT AAATTGGGCAATTTGAAAGAAGCCAATGAACTTGTGCATAAAATGCTCCACGAAGGACTTGTTCCAGATCATGTAACATA TACTAGCAACATCCATGCTCACTTGATGGCTGGGCATCTTAGGAAGGCTAGTGCGGTGTTCCGTATGATGTTGGAGAAAG GGATATTACCTTCAGTTGTTACTTATACAGTTTTGATTCATTCATATGCAGTTAGGGGCAGGCTGCAACTTGCTCTTAAG TACTTTTTTGAGATGCAAGAGAAGGGTGTTGATCCAAATGTGATCACCTACAATGCTTTAATCAATGGATTTTGCAAAGT GAGAAAAATGGATCTGGCATACAGTTTTTTTGCGGAAATGCAAGCAAAGGGTATTTATGCAAATAAGTACACCTACACCA TTTTAATAAATGAGAACTGCAACTTAGGCCGATGGCAGGAGGCTTTGAGGTTGTATAGGGAAATGCGAGATAGAGAAATT GAACCTGATTCTTGCACACATAGTGCACTATTGTTGAAGCATCTAAACAAAGACTATAAATTCCATGCACTTCAGCATCT TGAGAGTGTAATTGGAGGTGGTGAATAAACTTATGATGTAAAGGTGAAGGAATGATTATTTGTTATTCTGGTTTTGGCAT TCCCATATGACTGATGACATCCCTACATTTGGATGGGTTTTTGCCTCGTTGAGGTGTGAAGTTCCTGAGACATAATCGTG TATATTTATGTGTCTGTCATGGTAAGAATTCCCTTTTTTTCCTTAGATACTTGATACCTCCTGTAACCATTATATTCCTC TGGCCTTGATACATTTTCGATTTGTTTACAGGATAAGATGCCAATGGTTGTTTCTGATGATTGATGGCCAAACTTCAACT GTTCAAATGTTTTCACACGTTAAATACTCTGTCTGGTTAATACTTGGAAGAGTGTGGATCAACAAAGATTCAGAGATATG TCACATTAATGACATTATGCATAGAAGGCTAGTGGTATACAGATTAAACTCACTCCTCTGTCAAAATATTTTAAATTAAT TTTTGACATAGACCCCTTCCCAGACCCGTGTATGCAGAAGCTTTGTGCACCGGGCTGCCCTTTTTTGACATAATCATACC CCATTATTTTAATTCATTTTTCATAGTCCTCTTGGGGAAGAGTTTTTTTTTTTTACAATGGTGCTTATTCTTTGCATGAT AATTGTGATTATCATTTGTAAGCCTAGTGATACACATTTTGTATCCATCAAAACTTGTATAATGCTTGGAATAAAAAGTT AGATCCCTTCTGTGCTCTGTTGTCATTGAATGCACAACAAACTTATATTCATTAGTAAACTTATTATGGCTTAAATATGT TATTAGTCCCTATATTTGTATGGCTTTGTTATCTTAGTCCCTAACAACTTTTCTTTATAGTCCTTGTCCCTAATTGTTTC AAAGGAATGTTTTAGTTCCTCATCATACTAAACCTTTGTTAAATAGTGACATGGCTAACTGAGTTGCCTATCATACTTGC CAACACGTCCATAATAATCCACATAGGATATTGGAACTGCTCTCATCTTACACATGTCATCAAAGAGCAGGGCACTTCTC ACATGATTTGGGTGTCTTCTTCAATCTATAGAAATAGAAACCTTTTGATATTGATGCGGATTTGAATTAATATATGGATG CTGATTTGATTTGTTTTTATTTTTCTTATTTGTTTCAGTAATATGCAGATTTGATTTGTTAGGTTAATTTAGGATTTTTC TATTTTTATTATTATATCTTTATTAGTTTGGATTGGATTGTCCGGGGACATATGGGTTGGGGAGGGGAAGGGATCAATCC CTGGAGTGTAATTTATCTTCCCGATGTACCAAAAAAAAGTTAGGATTGGATTGTTTTCTTTATTAGATAGAATATAATTG TTTCTTATCTTATTGGATAAGATCTTAGGATCTTTTTCCTTTAATTGGATAGGATTCTAGTTTCCCCATTTCCTTGTACT CAACCCTTGTGAAAAGGAGATTTCAGAATTGAATAAAATCAATCAAGAATTTCTAAAAAATTGTGTGCAACTAAAAAGGG CTTTGTCAAGGATGATTTGCTTCTCTTATTCAAAGTAGGTCGCAAGAAGGATACCTCTGTGTCCAAACCTGTGACTGGAT CCTCCGCTAAGGTTCATAACACCTTTCCGCGCCATACATATTTGTGTAGGAAGCAAGACATTCTCAGGTACACCATCAAC TTTAAGCAAGAGGGTGTGTGTGTTTTGAATGGGTTGAGAAGGAGCGTTATCATGTTCTAATGTTGCGGTTTAAAATTGGG GAGATGCATACAAAAGAAACTCACAAACTAGAGAGAAAATGTGAACCTTGTTTTACAGTTAGTTGCTCAATCACTTAATT TTCATCAGGAGGTTGCTATATATTGGGTCCTTCAAGTTATAATTGTGTCCTAAACATGGATTTGTATTGTTGATGAAAAT TGCCCATCATTAGTAGTGAGAAGTGGAAGTTTGTAACTTTTTTCTAGTTTGTGAAATTGAAGCTTAATAAACTGTATTAT TTGTTTATTTTAACCTATCAGAGCTCATCACTTGCAGGATTCTGGACTTTTATAGATCCATTGACAACATTAGAGAAATT TTCCAATTTAATGTTGCTTGAGTTATCAAACTTGAGATTTCAAATTGCACTATGTAATAAATTAGCTATGCAGCAATTAT ATTACTTTTAACTAGTATGTCTGTCCATGTAATGGCAGTAAATGCTTAAGAATGGTATGTACATGGAATTGAATAGGGTA ACATGATATTCATTCAACGACAATGTTTGGTGGAAGTTGATGGTCTCATTATAATGATCATATTTAAGCAGTCTTCCAGT TTTATGTCCCCTTGTTCTTTTGTTCTCTTTATTCCTCTTGATAGTTGTATCAATTATGTACTGTATTTGTTGTTCCTAGG TATGAACTTCTTTCAACTCATGTTGGCATTAATTATTTATGAAGCTGTCTTGATTAAGTAGATGCGTATTGGTGCTTTGA TATTTCCTCTATTATAAATAGTGTTTTGAATTATTTTATATGATTAATAACTCTGAGCAACTGTCTTAACTGGTTTCTTT CGTATATGTGGTTTTTATTACAAATTTTGATGCTATTAGAAATTGTAAATACGATCAGTTTTTCTGCTACAAATTTATAT TATGCGTCAGGTTTTATTTGAGAGTGTTTTTATATTCTGAATTTTAAGCTCTACATGAGTTTAGGTTTAGGATTTTGTCT CACTTGCTTGTCACATGACTGACATGAGTACAGAGGACTACATCGCTGCGTCCACTTGAGGAAATTCACTTTCATCTGCT ACTTATGTTCTTTCGGCGTGGATTAGCTTGGAAACCAAAGACCTGTTGCCTTGTTTTGCTTGTGTTGATCCAGAAATAAA ATTCAACAATGACTCAGATATTGTGATTAGACTTCTTCTAGCAAGCTAAACAAGGCCATGGTTTGTTGGTTTTTGATGCT AGAAGAGAGGTTTCCCTTTTGATAATAGCCTTAAAATCTCCAAGCCTTGGCCATGGCCTTTCTCACCACTTTGTATGCAC TCCTTTGTGTGCAGTAGAGAATCTTTGGCTGCCATACATACAATTAGGACCTTATAAAATTCATCCAAAATTTGAGTTGC ACTGAAAAGTGTTTACTGGGTCACATGAGGTTGGACCAATATTTCAATACATTTATGTAGAACTTGCAAGCCTCCTAGAT TATGTCCTA
CDS sequence (LotjaGi2g1v0273100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCTCTCTTTCAGATTCTTCTCCACTCCAGCAGCCACAGCCCTCAAATCTCGCTTCCTCTTCTCCTTCAGCACATG CTCCTCAACCCACCACGACGCCGTTTCACGCCCTTCCCCCGTTTCCGATCACTTGCGCGCCGCGGTTTCCCAGCCTGAGC TTCTCGTCCGGGTCCTCCACTCGGTCCGAACCCGACCCGGAACTGCTCTCAGATTCTTCCGTTGGGTCGAGAGGCAACCC GGGTTTACTGGGTCTGAATCGGCGTTCGCCGCCATCCTCGATATTCTCGCCAGGAACGGTTGGATGAGGTCTGCGTATTG GGTCATGGAGAAGAATGTGGTTGCTGTGAAAATGGAGGATGCTGTCATGGATGTTTTGGTTAGTGGTTCTTCTTCTTCTT CTTCTTCTTCTTCGGTTAAGCTTCTTGATTTGTTGCTTTTTATTCTGTCGAAAAAATCGATGCTCGAGAAGTGTTTGTTG GTTTTCTACAAGATGATTCATAATGGGTTGTTACCTGGTGTGAGGAATTGCAATAGGGTTCTTAGGATGCTTAGGGATAG GAACATGGTGAATGAAGCTAGTGAGGTTTTTAATGTGATGATTGAGTGTGGGATAAGACCTACCACTGTTACTTATAACA CCTTGATGGATTCGTTTTGCAAGGAAGGGGAGGTTCAGCGCGCGGTTGAGCTTCTCACTCGAATGCGGCTAACCAGGTGT GCTCCCGATGATGTGACGTATAATATTTTGGTGAATGGTTGGTCTAACAAAGGGGAGTTGGAGCAGGCGAGGAAACTGAT TGAGGAGATGTTGAAATTGGGGCTGAAGGTTTCGGCTTACACGTATAACCCGCTGATTCGCGGGTATCGTGAGAAAGGGC TGCATGAGGAAGCAGCGGATGTATGGGAGATGTTGGATAGAGAAGCTTTGTCTACTGTGGCGACCTACAATACGATTATG TGTGGTCTTTGCAAGTGTGGAAGGGTGAGTGATGCAAGGCCGCTGTTAGATGATATGATGAATAAAAATGTGATGCCGGA CTTGGTTTCCTATAATACTCTAATTTATGGTTACAGCAGGTTGGGCAACATGGGGGAGGCTTTTCACTTGTTTGATGAGT TGAGATATAGAAGTCTTGTTCCCACTGTTGTGACCTATAATACGCTTATAGACGGTCTTTGCAGATTGGGGGACATGGAT AAAGCCAGGCGGTTAAAAGATGATATGATCAGACACGGACCTCATCCTGATGTATTTACTTTTACAACTCTTGTCAGAGG ATTTTGCATCACGGGGAACTTACCAATGGCTAAGGAGCTATTTGAAGAGATGCTTCATAGAGGATTGCAGCCAGATCGTC TTGCATACACAACTCGGATAGTGGGTGAACTGAAACTTGGTGACCCATTTAAGGCTTTTGGTATGCAGGAAGAAATGCTT GCCAACTTTCCTCCTGATTTGATCGTATATAATATCTTCATCGATGGGCTTTATAAATTGGGCAATTTGAAAGAAGCCAA TGAACTTGTGCATAAAATGCTCCACGAAGGACTTGTTCCAGATCATGTAACATATACTAGCAACATCCATGCTCACTTGA TGGCTGGGCATCTTAGGAAGGCTAGTGCGGTGTTCCGTATGATGTTGGAGAAAGGGATATTACCTTCAGTTGTTACTTAT ACAGTTTTGATTCATTCATATGCAGTTAGGGGCAGGCTGCAACTTGCTCTTAAGTACTTTTTTGAGATGCAAGAGAAGGG TGTTGATCCAAATGTGATCACCTACAATGCTTTAATCAATGGATTTTGCAAAGTGAGAAAAATGGATCTGGCATACAGTT TTTTTGCGGAAATGCAAGCAAAGGGTATTTATGCAAATAAGTACACCTACACCATTTTAATAAATGAGAACTGCAACTTA GGCCGATGGCAGGAGGCTTTGAGGTTGTATAGGGAAATGCGAGATAGAGAAATTGAACCTGATTCTTGCACACATAGTGC ACTATTGTTGAAGCATCTAAACAAAGACTATAAATTCCATGCACTTCAGCATCTTGAGAGTGTAATTGGAGGTGGTGAAT AA
Protein sequence (LotjaGi2g1v0273100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLSFRFFSTPAATALKSRFLFSFSTCSSTHHDAVSRPSPVSDHLRAAVSQPELLVRVLHSVRTRPGTALRFFRWVERQP GFTGSESAFAAILDILARNGWMRSAYWVMEKNVVAVKMEDAVMDVLVSGSSSSSSSSSVKLLDLLLFILSKKSMLEKCLL VFYKMIHNGLLPGVRNCNRVLRMLRDRNMVNEASEVFNVMIECGIRPTTVTYNTLMDSFCKEGEVQRAVELLTRMRLTRC APDDVTYNILVNGWSNKGELEQARKLIEEMLKLGLKVSAYTYNPLIRGYREKGLHEEAADVWEMLDREALSTVATYNTIM CGLCKCGRVSDARPLLDDMMNKNVMPDLVSYNTLIYGYSRLGNMGEAFHLFDELRYRSLVPTVVTYNTLIDGLCRLGDMD KARRLKDDMIRHGPHPDVFTFTTLVRGFCITGNLPMAKELFEEMLHRGLQPDRLAYTTRIVGELKLGDPFKAFGMQEEML ANFPPDLIVYNIFIDGLYKLGNLKEANELVHKMLHEGLVPDHVTYTSNIHAHLMAGHLRKASAVFRMMLEKGILPSVVTY TVLIHSYAVRGRLQLALKYFFEMQEKGVDPNVITYNALINGFCKVRKMDLAYSFFAEMQAKGIYANKYTYTILINENCNL GRWQEALRLYREMRDREIEPDSCTHSALLLKHLNKDYKFHALQHLESVIGGGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| PANTHER | 68 | 266 | 199 | 3.6E-137 | – | |
| ProSiteProfiles | 85 | 120 | 36 | 5.36 | ||
| ProSiteProfiles | 138 | 172 | 35 | 7.3 | ||
| Gene3D | 139 | 309 | 171 | 1.7E-40 | ||
| ProSiteProfiles | 173 | 207 | 35 | 8.605 | ||
| TIGRFAM | 177 | 208 | 32 | 0.0029 | ||
| Pfam | 207 | 253 | 47 | 6.2E-15 | ||
| ProSiteProfiles | 208 | 242 | 35 | 12.167 | ||
| TIGRFAM | 210 | 243 | 34 | 4.4E-9 | ||
| SUPERFAMILY | 238 | 652 | 415 | 2.88E-7 | ||
| PANTHER | 239 | 376 | 138 | 3.6E-137 | – | |
| ProSiteProfiles | 243 | 277 | 35 | 11.992 | ||
| TIGRFAM | 245 | 278 | 34 | 2.4E-6 | ||
| ProSiteProfiles | 278 | 308 | 31 | 8.857 | ||
| TIGRFAM | 280 | 305 | 26 | 0.0012 | ||
| Pfam | 280 | 306 | 27 | 0.0066 | ||
| Gene3D | 310 | 376 | 67 | 3.5E-19 | ||
| ProSiteProfiles | 312 | 346 | 35 | 12.211 | ||
| Pfam | 313 | 351 | 39 | 6.1E-10 | ||
| TIGRFAM | 315 | 347 | 33 | 9.1E-8 | ||
| ProSiteProfiles | 347 | 381 | 35 | 12.244 | ||
| TIGRFAM | 349 | 382 | 34 | 5.3E-7 | ||
| PANTHER | 370 | 533 | 164 | 3.6E-137 | – | |
| Gene3D | 377 | 463 | 87 | 2.0E-25 | ||
| Pfam | 381 | 429 | 49 | 1.7E-17 | ||
| ProSiteProfiles | 382 | 416 | 35 | 13.197 | ||
| TIGRFAM | 384 | 418 | 35 | 2.4E-10 | ||
| ProSiteProfiles | 417 | 451 | 35 | 12.781 | ||
| TIGRFAM | 419 | 452 | 34 | 4.0E-7 | ||
| ProSiteProfiles | 452 | 482 | 31 | 5.568 | ||
| Gene3D | 464 | 574 | 111 | 9.6E-29 | ||
| Pfam | 483 | 513 | 31 | 7.5E-6 | ||
| ProSiteProfiles | 486 | 520 | 35 | 11.652 | ||
| TIGRFAM | 488 | 521 | 34 | 3.0E-7 | ||
| PANTHER | 517 | 671 | 155 | 3.6E-137 | – | |
| Pfam | 520 | 568 | 49 | 3.0E-11 | ||
| ProSiteProfiles | 521 | 555 | 35 | 10.665 | ||
| TIGRFAM | 523 | 556 | 34 | 4.0E-5 | ||
| ProSiteProfiles | 556 | 590 | 35 | 12.036 | ||
| TIGRFAM | 558 | 592 | 35 | 3.7E-8 | ||
| Gene3D | 580 | 660 | 81 | 2.8E-25 | ||
| Pfam | 590 | 639 | 50 | 5.6E-18 | ||
| ProSiteProfiles | 591 | 625 | 35 | 12.474 | ||
| TIGRFAM | 593 | 626 | 34 | 2.7E-9 | ||
| ProSiteProfiles | 626 | 660 | 35 | 12.715 | ||
| TIGRFAM | 628 | 662 | 35 | 7.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0273100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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