Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0278900 |
Transcript ID | LotjaGi2g1v0278900.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.2 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75034450..75039345) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTATGGTTGATGAGCCACTATATCCAATAGCAGTGCTTATAGACGAGCTGAAAAACGATGACATCCAGCTGCGGTT GAACTCAATTCGCAAGCTATCCACGATTGCTCGTGCGCTTGGGGAGGAGCGAACTCGTAAGGAGTTGATACCGTTTTTGG GTGAGAATAATGATGATGATGACGAGGTGCTTCTTGCAATGGCGGAAGAGTTGGGGGTTTTCATTCCGTTTGTTGGGGGA GTGGAGCATGCCCACGTGTTGCTCCCGCCTTTGGAGACGCTTTGCACTGTTGAGGAAACGTGTGTGAGGGATAAAGCTGT GGAATCACTTTGTCGAATTGGACCTCAGATGAGGGAGAGTGATTTGGTTGAGTATTTCATTCCTCTGGTCAAGGTAACTT TATTTTGTTTCACTGATATAAACATATTTATTATTACCATATGTTTAAAACATTTGGAATGTTTGTACAAAAGAAATTTT CATTGGTCATGCTAGGTTCTTGTGCCTATCCTGGTTCTGATTATCACATTCATTTATTTTTCTAGAATTTTAAAAATTAT TTTATATGAACAAATTGGTAGTCTTCTTATGAAATAGAATGTTCTTGATTAATTCTACTGATTAACTCTGTGTTAGAAAC GAGAATATCTAGAAATTATCTTGTAACATCATTATGGTATCTTAGATAATCTCTTAAGAGAGGTTTCCTTAATTCATTAC ATTTCCTGATTTGTTTTCTTATTTGATTTTGGTTATGATTAGGAGTCTATTGCAAGTACAAATAGTGATTAGTGCTTTGG GTTTTGTATCACATCAATATATATTATAGAATATTATTCAGTCTATTTTATCTTTTACTTCTTTCATTACCTAAATCCCT ACATTTTCAACAACTTGAATGATGCCTATATCTTGCTTATGTCACACTACTATTTGCCTGCAGTATCTAACTCCTTGGTG GTGGTGCTAATTGCTAAATGGTTGATTTATTGTAGAGAATGTTCATTAGTTATGATATGTTGAATTTATCCTGTTAGTCT GGTAGTTTAACATCTTGCTGAATATATGTTTTGCATTTTGTTTCAGAGATTGGCAGCAGGTGAATGGTTCACTGCCCGAG TGTCTGCATGTGGACTAGTTCATATTGTTTACCCAAGTGCACCAGAAATGTCAAAGACAGAGTTGAGATCAATATACAGT CAGCTGTGTCAAGATGACATGCCAATGGTTAGAAGGTCTGCTGCATCAAATCTTGGGAAGTTTGCTGCAACTGTTGAATA TGCTCATTTGAAGGCAGACATCATGTCAATTTTTGAGGATCTTACTAAGGATGGTAATTGAATATGCATTTCTATAAAAA GTTTGTCAATTGAGTCCATAACGTATTTTCCTAGACACAAGTGGAGTTTTAAATATGTAATTTAGTTTTTGACTTGTTTC AGATCAAGACTCCGTTAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGCAAGCTGTTGGAGCCACAAGACTGTATCA CTCACATACTTCCAGTGATCGTTAACTTCTCGCAGGTGCATCTTTAGGAGTGGATAAAACTATAGGTGTATACATACGTA GTTACGTACATATATTTATGTATGGATGTATTATATTTAGCTCCTCTCCTATCAGGTGTTATATGTGTGTGTGTATGATG TGCACTTACCAAAAATATCTCAAGATATATGATTTAATGCAGTACAATGATTTTAAAGATAATGATACGCAATACTAACC ACTATAATTATACTGTTATAGATATATTTAATTTCATCAAAATATCATTACTGCAGTGTAATGATAATGTGATATTTTAT TGACGAATAGTAAACTTATAATTATGTATTCTATATTTTTTAATTTCACCTTCTATTTCCTTCTTGTTTAGTTAAAACTT CCTATCAGGGAAAAGGAAAATAATAATTTAAACTATTCAGTCTCTTCCCTTCCCCTTCATTTTTATTTATGCCTGTATTT ATGTATTATATATATGTGGAATGTTGTGTCTGTGTCATGTACAGCAAGTGACACTTATGAATTGATTTATGATTTTTTTA TCTGATTTGATTTTGCTTGATCCTGTATAGGATAAGTCTTGGCGTGTGCGATATATGGTTGCAAATCAATTGTATGAGCT CTGCGAAGCTGTTGGCCCTGAACCTACCAGGTATTTTGTTTTGGCTAATTATTAGACATGCTGCAGATCTTTCTATCATA TAATTCATGACCATAGTGGGGCGGTCATGAAAATTTTTATATGCTAACACTTATGATTCTTCTACTGGTTTCCTCTTATA TTTACTAAGCTACTGATTCAGTCTCCACTCTCCAGTCATTAGATCTACTTATGTTTGTTAAGTTTTCTCTCATGATATTG TTTTTTTATGAAGAACGGAATTGGTCCCTGCTTATGTGCGGTTGCTTCGAGACAATGAGGCTGAAGTACGGATTGCAGCT GCAGGGAAAGTGACAAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGGTGTG CATGTCTTTTGTTTTGATCATGAATTTCAGTATTCTTAAATTTACATTTGCAGGTTTAAATACTTTGCAACAACTTTTGC AGGAATTGTCATCTGATTCTTCGCAGCATGTTCGCTCTGCTCTGGCATCAGTAATAATGGGAATGGCTCCAGTATTAGGA AAGGTAAGGTACAAGTGTCAAATAGCATCTTTGTATTTATTAAGACTTTTATATAGGGTCTACTGCATTATGAATGTATT ACTTTTCATTCTGCAACGGATGCCGTGGCAATGTTGTTTAACCTTTTCTCCTTGTTCTCCGTTTTTGATCGATTTATCGA GGAACTACTACCTATTATTCGTTTTCTTCATTGCAGGATGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTT GAAGGATGAATTTCCTGATGTGCGCCTAAACATCATAAGCAAGCTTGATCAAGTGAATCAGGTTTATAAACTTCTGAAGT GGGTTTTATGTGCAAATTGCTTTATACTCGTTGACAACCTGTTTCTTTTTCTCTGGTGATGCTATTATTTCTGGCATAGT TTATGGCCTTATGCCTGCATGCAGCTCTCTACTCGCATACAAAATATAAAGCATATAAAGAAATGAAAACTTTTACAGAT GTTGATCTAGTCATACTTGCAGGTTATTGGAATCGATTTGTTATCTCAATCTTTACTACCAGCCATTGTTGAGCTTGCTG AGGACAGGCATTGGAGGGTTCGGCTTGCAATCATAGAGTATATACCCTTATTGGCAAGCCAATTGGGGGTTGGGTTTTTT GACGATAAGCTTGGTGCTCTTTGCATGCAGTGGTTACTGGACAAGGTTTGAGGACAACATTTCCTTGCTCATTTTAGCAT ATTTTAGGGGGCCCTTTCTTCCACATGAATGTGGTTGTCAACTGCCTTATTGTTTCTTGCAGGTTCATTCAATTCGTGAG GCAGCTGCTAACAACTTGAAGCGCCTGGCAGAAGAATTTGGTCCTGAATGGGCTATGCAGCACATAATTCCACAGGTTAA TGTGTCGGCATAGTTTATTGTTTTCTTATCGTGCACCAACATCAACATGTCTCTGTATGATATTATGAATGTGTTTGTGT GGGTGTATGTCTATCTCTTATTGTCTTTTATTTGAAGTTTCTTTACCTGTTTTACTTGACATTTTGATTTGGATACATTT CATTGCTTACAATATGATGGAATTTTAGAAAATCGCATAAACCTTAGTGGATGAAGAAAAAGCCTCGTGCTGGATCAGTA CAAATGTAACTCTTTTGAGTAAAGTATAAGTTACAGAGAAGCTGATATATCTTAAGGAGTTCTTTAGTTCTGGATTATCA TTTTTGCATTTTTTTTTGTTAATAATCCAGATATAAATTTTATTAGCTTGTGTGGAGAATTATATTCTAGTAACCAATTT GTAGATATATCTTGTGTGGTATTAAAATTGCTTGAAAGTGTCATTAAGGTTCTTAAGCGTGGTATCTTGAACAAGATAAA TACTTCAATCAATTGGAGTGTGTAAGTGTAATGAATGAGTGTCAATTGGAAGTACAGATGGGGACACAGTAGTGTCACTA GTCTTGATTGAGACTGAGAAGCTTGCACTCATCTTATCTTGTTCCAGTTTAAGTATACAAGTTTCCTTCAAAGGGAGTTG TGGTATAATGAAACTATATGTTGTTGTGCTTGTGGTACTTGGTTAAATAGGATGTCATCGACATAGAGATAAAATAATCA CTCATGAGCATAGGAATTTCACCTCTGGGCTCTGGCTAGAAATAGTTAATCTAGATTTATATTTCATTCTATGTCACTTG GCTTCAGGAATTTCACCTCTGGGCTCTGGCTAGAAAGCTCATAGTTATGGTTTCTTTCTCTCCAAGCTTGCTTCTGTCCT CTGCTAAAGCTTTTTTGCCAGTTCCTCTGTAACATAATTTCTTGTGTTTCTGTGTCCCCCCTTTGCGGGGTCTAATTTTC ATATTGAAATACCTGCTTTTGATCTTTTGTTCTAATATTTTTTTCTGCTGATCTCTCAGATGTAACTCACTAATAGCAGT ATTGCATGTATGAAACACAGGTTTTGGAGATGATTAGCAATCCACACTATTTGTATCGGATGACCGTTCTTTATGCTATC TCTTTGCTTGCTCCTGTCATGGGCTCTGAAATCACAAGCTCAAAATTATTGCCTGTTGTTGTTGCTGCATCAAAAGACAG GTATTTCAATCTTCTTTAAATTTAAGTGTGGCTCTACTACAGTTTAAGTTTTAGCTTTCAAACTGCTGTCTGTTTGCTTC TGTGTAGAGTACCCAA
CDS sequence (LotjaGi2g1v0278900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTATGGTTGATGAGCCACTATATCCAATAGCAGTGCTTATAGACGAGCTGAAAAACGATGACATCCAGCTGCGGTT GAACTCAATTCGCAAGCTATCCACGATTGCTCGTGCGCTTGGGGAGGAGCGAACTCGTAAGGAGTTGATACCGTTTTTGG GTGAGAATAATGATGATGATGACGAGGTGCTTCTTGCAATGGCGGAAGAGTTGGGGGTTTTCATTCCGTTTGTTGGGGGA GTGGAGCATGCCCACGTGTTGCTCCCGCCTTTGGAGACGCTTTGCACTGTTGAGGAAACGTGTGTGAGGGATAAAGCTGT GGAATCACTTTGTCGAATTGGACCTCAGATGAGGGAGAGTGATTTGGTTGAGTATTTCATTCCTCTGGTCAAGAGATTGG CAGCAGGTGAATGGTTCACTGCCCGAGTGTCTGCATGTGGACTAGTTCATATTGTTTACCCAAGTGCACCAGAAATGTCA AAGACAGAGTTGAGATCAATATACAGTCAGCTGTGTCAAGATGACATGCCAATGGTTAGAAGGTCTGCTGCATCAAATCT TGGGAAGTTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCAGACATCATGTCAATTTTTGAGGATCTTACTAAGGATG ATCAAGACTCCGTTAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGCAAGCTGTTGGAGCCACAAGACTGTATCACT CACATACTTCCAGTGATCGTTAACTTCTCGCAGGATAAGTCTTGGCGTGTGCGATATATGGTTGCAAATCAATTGTATGA GCTCTGCGAAGCTGTTGGCCCTGAACCTACCAGAACGGAATTGGTCCCTGCTTATGTGCGGTTGCTTCGAGACAATGAGG CTGAAGTACGGATTGCAGCTGCAGGGAAAGTGACAAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATT CTTCCTTGTGTGAAGGAATTGTCATCTGATTCTTCGCAGCATGTTCGCTCTGCTCTGGCATCAGTAATAATGGGAATGGC TCCAGTATTAGGAAAGGATGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCTGATG TGCGCCTAAACATCATAAGCAAGCTTGATCAAGTGAATCAGGTTATTGGAATCGATTTGTTATCTCAATCTTTACTACCA GCCATTGTTGAGCTTGCTGAGGACAGGCATTGGAGGGTTCGGCTTGCAATCATAGAGTATATACCCTTATTGGCAAGCCA ATTGGGGGTTGGGTTTTTTGACGATAAGCTTGGTGCTCTTTGCATGCAGTGGTTACTGGACAAGGTTCATTCAATTCGTG AGGCAGCTGCTAACAACTTGAAGCGCCTGGCAGAAGAATTTGGTCCTGAATGGGCTATGCAGCACATAATTCCACAGGTT TTGGAGATGATTAGCAATCCACACTATTTGTATCGGATGACCGTTCTTTATGCTATCTCTTTGCTTGCTCCTGTCATGGG CTCTGAAATCACAAGCTCAAAATTATTGCCTGTTGTTGTTGCTGCATCAAAAGACAGGTATTTCAATCTTCTTTAA
Protein sequence (LotjaGi2g1v0278900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLGENNDDDDEVLLAMAEELGVFIPFVGG VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGPQMRESDLVEYFIPLVKRLAAGEWFTARVSACGLVHIVYPSAPEMS KTELRSIYSQLCQDDMPMVRRSAASNLGKFAATVEYAHLKADIMSIFEDLTKDDQDSVRLLAVEGCAALGKLLEPQDCIT HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPDLAIQHI LPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLLDKVHSIREAAANNLKRLAEEFGPEWAMQHIIPQV LEMISNPHYLYRMTVLYAISLLAPVMGSEITSSKLLPVVVAASKDRYFNLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 530 | 530 | 0.0 | – | |
PANTHER | 1 | 530 | 530 | 0.0 | – | |
Phobius | 1 | 488 | 488 | - | – | |
Gene3D | 2 | 530 | 529 | 1.1E-229 | ||
SUPERFAMILY | 8 | 528 | 521 | 9.28E-94 | ||
ProSiteProfiles | 10 | 48 | 39 | 9.899 | ||
ProSiteProfiles | 87 | 125 | 39 | 8.606 | ||
ProSiteProfiles | 164 | 202 | 39 | 9.056 | ||
ProSiteProfiles | 203 | 241 | 39 | 9.674 | ||
ProSiteProfiles | 242 | 280 | 39 | 13.693 | ||
Pfam | 242 | 270 | 29 | 1.4E-4 | ||
ProSiteProfiles | 281 | 319 | 39 | 12.878 | ||
ProSiteProfiles | 320 | 358 | 39 | 12.147 | ||
ProSiteProfiles | 359 | 397 | 39 | 12.765 | ||
Pfam | 361 | 461 | 101 | 9.9E-11 | – | |
ProSiteProfiles | 398 | 436 | 39 | 11.669 | ||
Coils | 446 | 466 | 21 | - | – | |
ProSiteProfiles | 476 | 514 | 39 | 10.349 | ||
Phobius | 489 | 507 | 19 | - | – | |
Phobius | 508 | 531 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0278900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…