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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0297200 |
| Transcript ID | LotjaGi2g1v0297200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-protein ligase, putative; TAIR: AT1G69330.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8K0W3|RN208_MOUSE RING finger protein 208; TrEMBL-Plants: tr|I1JEB9|I1JEB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0297200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77206495..77208734) extracted from Lotus japonicus Gifu genome v1.2.
GTTGACAGTAGTTATGACCAAATAGGCCATGCCTGCCAGCCCCATCATTCCCAAAACCAAAACCTTCTCCGACGACGTCG TTCCCTCTCTTCTTCTTCTTCTCCTCATATATAACTCACCTCACCACCTTCTTCTTCTTCTTCTTCCTCTTGCAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGTGACAGAGGGAGAGCGCGATCTTCTTCCATCGATCTCTACTCTTTCCTCTCAC CTTTTTCCAGATTCCTCCAATTTTCCGATTCATCCCCGAGATGCCATTCGCTTCCCTCTCAAATCACCTGCTTCACTCTC ACGGTAAGATTTTCCATTTCCACTTCGCGCGATTCCAGCACCAATACCTAGATTTTTCATTTTCCCAATTTCGTTAGTTT CTTTCAGCTCATGAACAAGAAGATAATGCGAATTAGGTTTTCAATTTTTGTCAAATTATAATTGCATTAATTCATCTCAG ATTTAAATAAAAAATAGTTAATCAATCGTTATAATTTGGGATTCAAGTTTATGGACAGAAGCTTAATCAACTTATAGAAT ATTGTAGCCTTTCAATTTTGTGAAGAATCTTATGGTTATGTTATGTATTAGTTGTATTAGAACCAAGAGGTGCTGTTTAT AATTTGATATGATATATACACTCATAGTACTTGGAAATTTGGTTAGCTTTTCTTTCTGCATTTAAATCTCAGATGTCATT GATTTTATTTATATAAATTGTAAAGCAGTCTAATGAAAATTAAGTTATTTATTTATTTATTTATTTATATAGATTTTGAT TGAGGCGGCGGCTGCGGCTAATTAGGGAAAGAGTGACTGCTGGTTTCGCGGGAAAGTGGTTCTATTGCTGGATAATGGCT GTGACATTTCTGTGATTACTGATTGCTGCCTTTGCGTTCTAAATTTTTTCGTCTTTCACGATGTGGAGTTTCGCGTCGCG AGCCTTTACGAGCATTACAAAGAAAAGGCGCTCCGCGGAGCCGAGTCATACTTCTGCAGAATGCTCGGATGATGAGGTTT GCTCTAATGCCAGCAGAGATGAAGGGCTAGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAATGTGCCTTAT GTGTTGTGGTGCGGCCACACCTTGTGTAAAAATTGTGTCCTTGGACTTCAGTGGGCTATGGTGAAATTTCCTACTCAGCA AGTCAGGGTTCCTCTCTTCATTTGTTGTCCATGGTGCCACCTGTTATCGTTCCGGCTCATTTACAAGGGGAATTTGAAAT TTCCTCGTAAGAACTACTTCCTTCTTTGGATGGTTGAGAGTCGGAACGGTGATAGGCACAAGCATTCCTCTTGTGTGGAT AGCCAACCAAATTGGTCTCCCAAATGCAACCTTCTGGGAAGTCAAGGTACTACTTGTAACCTTAGAAGGGCCTCCCCAAT TATTCGTCGTTCTGGACAGTCGGGATCCAACAGTGAGGTTGGTATCAGTGATGGAGAGAGACACAATTTCTCCCTACATA AATCTCTGGATTTCTTCATTCATTTTACATCCAAGTTCCCACTAGTCATCATTTTCCTTTTGATTGCCTTTTTCATCATT CCCTGCAGTGCTGTCATTTTAGTCATTTACTTGCTACTCACTATTCTTTTTGCTATCCCATCATTCCTCGTATTGTACTT TGCATTCCCTACGATCCAGAGGCTGATAACCGAAATAACATCTTAAGATGCAGCCTCACTTCTACGGACAATGGCAGCGT GTGAGTTCAACTTCAACAAATTCCACTATATACGTTTGGGTTGATTGTTCTAACCTCTACCTTATGGTATTTTTTTTTTG TTATTTGTAGGTGGTCATGTTTTTATGGTTCTTCTTTCTTTTGTAGTTATGCCATTTTCACATCAAATTCAAGATAAAAA TCTTGAATAGAACTTTGCTCTGGGCAGTTGTAATTTGCTTTTTAATTCCTTTTTTCTCTTGAAGTGGGTGATTAACTATT GTACAAAGGAACAAGGATTACAGGCTAAAATTTTATGTGCCAAATGGCTTTGGATATGTGATTACGTGTAGAATATGTTT CTTGCAATATTAATATTTGGAAGTGTAGGCTTGATAACCTGCGTTTCGTGTCATTTTGGCTTAATATTTTTTGCGTTTAC TTGAATTGCCAGATTAAATTCACTTGAATATAGTAGCTTACCTATCCATGCTACTTGTTTGGGTTCTCTTAAATTCAAAC
CDS sequence (LotjaGi2g1v0297200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGTTTCGCGTCGCGAGCCTTTACGAGCATTACAAAGAAAAGGCGCTCCGCGGAGCCGAGTCATACTTCTGCAGA ATGCTCGGATGATGAGGTTTGCTCTAATGCCAGCAGAGATGAAGGGCTAGAGTGTCCAATATGCTGGGAATCTTTCAACA TTGTTGAGAATGTGCCTTATGTGTTGTGGTGCGGCCACACCTTGTGTAAAAATTGTGTCCTTGGACTTCAGTGGGCTATG GTGAAATTTCCTACTCAGCAAGTCAGGGTTCCTCTCTTCATTTGTTGTCCATGGTGCCACCTGTTATCGTTCCGGCTCAT TTACAAGGGGAATTTGAAATTTCCTCGTAAGAACTACTTCCTTCTTTGGATGGTTGAGAGTCGGAACGGTGATAGGCACA AGCATTCCTCTTGTGTGGATAGCCAACCAAATTGGTCTCCCAAATGCAACCTTCTGGGAAGTCAAGGTACTACTTGTAAC CTTAGAAGGGCCTCCCCAATTATTCGTCGTTCTGGACAGTCGGGATCCAACAGTGAGGTTGGTATCAGTGATGGAGAGAG ACACAATTTCTCCCTACATAAATCTCTGGATTTCTTCATTCATTTTACATCCAAGTTCCCACTAGTCATCATTTTCCTTT TGATTGCCTTTTTCATCATTCCCTGCAGTGCTGTCATTTTAGTCATTTACTTGCTACTCACTATTCTTTTTGCTATCCCA TCATTCCTCGTATTGTACTTTGCATTCCCTACGATCCAGAGGCTGATAACCGAAATAACATCTTAA
Protein sequence (LotjaGi2g1v0297200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWSFASRAFTSITKKRRSAEPSHTSAECSDDEVCSNASRDEGLECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWAM VKFPTQQVRVPLFICCPWCHLLSFRLIYKGNLKFPRKNYFLLWMVESRNGDRHKHSSCVDSQPNWSPKCNLLGSQGTTCN LRRASPIIRRSGQSGSNSEVGISDGERHNFSLHKSLDFFIHFTSKFPLVIIFLLIAFFIIPCSAVILVIYLLLTILFAIP SFLVLYFAFPTIQRLITEITS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 261 | 261 | 8.4E-137 | – | |
| PANTHER | 1 | 261 | 261 | 8.4E-137 | – | |
| Phobius | 1 | 89 | 89 | - | – | |
| Gene3D | 33 | 138 | 106 | 1.9E-10 | ||
| SUPERFAMILY | 40 | 102 | 63 | 9.42E-9 | – | |
| Pfam | 45 | 85 | 41 | 2.6E-7 | ||
| ProSiteProfiles | 45 | 100 | 56 | 9.76 | ||
| ProSitePatterns | 64 | 73 | 10 | - | ||
| Phobius | 90 | 108 | 19 | - | – | |
| Phobius | 109 | 197 | 89 | - | – | |
| Phobius | 198 | 220 | 23 | - | – | |
| TMHMM | 198 | 220 | 23 | - | – | |
| Phobius | 221 | 225 | 5 | - | – | |
| TMHMM | 225 | 247 | 23 | - | – | |
| Phobius | 226 | 249 | 24 | - | – | |
| Phobius | 250 | 261 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0297200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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