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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0311800 |
| Transcript ID | LotjaGi2g1v0311800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Microtubule-associated protein TORTIFOLIA1; TAIR: AT1G27210.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q93ZH1|TORL4_ARATH TORTIFOLIA1-like protein 4; TrEMBL-Plants: tr|G7K6Y7|G7K6Y7_MEDTR Microtubule-associated TORTIFOLIA-like protein; Found in the gene: LotjaGi2g1v0311800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78606651..78610885) extracted from Lotus japonicus Gifu genome v1.2.
CGTCTCGATATAAAAACCCACTGATAACGATAACTCGTTTTCACGCCAAACAACTCTTCCAAACTCTGCCGCCAAAAAAT CCACCCTCAAACGCACCGTTTAGCCTCTTCCGTCTCCTTCACCGCCGTGTCGCGAATGCTGAGTCACTGACTCGCCGCCG CAGAACTCAAACACCACAATGTCCTACCGGCGTCACTCCCTCAGCGGCCCACCTCAACTCATCAGCTCCGGGTCGACTCA GGAGCTCCGGCAACGAGTCACCGCGTGCCTCAACAAGCTCTCCGACCGCGACACTCTCGCCTGCGCCACCGCGGAGCTTG AATCCATCGCTCGAACGCTAACCCATGACTCGTTCTCCTCCTTCCTCTCCTGCATTCACAACACGGATTCCTCTTCCAAA TCGCCGGTTCGGAAGCAATGCGTTCACCTCTTGACCCTCCTCTCGCGTTTCCACGGTGACGCGCTCTCACCGTTCCTCTC CAAGATGATCTCCACCGTCCTCCTCCGCCTCCGGGACACCGATTCCGCCGTCCGATCCGCATGCGTCGACGCCGTCTCCG CCATGTCGTCGCGGATCACCCGGCCGTCGTTCTCCGTTTCGTTCCTGAAGCCTTTCATGGACGCCCTGGCGCAGGAGCAG GACGGTAACTCTCAGATCGGTGCCGCGCTCTGCCTTGCTGCGGCGGTTGAGGCTGCGCCGGACCCGGATGTTGAGTCTCT CCGGCGGAGCGCGCTGCCGAGGCTGGGGAAGCTCTTGAAGAAAGACACGTGTAAGGCGAGGGCGGCGCTGCTGGTGCTGG TCGGAAGCGTGGTTGCCGCCGGAGGCGCTGCGAGCCGTGGAGTATTGGAGTGGTTGGTGCCGTCCCTCGTTGAGTTCCTG AGCAGTGAGGATTGGACGGTGAGAAAGGCCTCGGCGGAGGCATTGGGGAAGGTGGCTTCTGTAGAGAAAGGCTTGGCGTC GCAGCATAAGGTTCTGTGCGTGGATTCATTGCAGAATCGAAGGTTTGATAAGGTGGGTTGATCTTCCTTTGCTGAGTTTT TCAATGTTAGATTATACAGTTCTGAAGATGGTGAAACCGAACAAGAAAAACATGAAAAGTAGTAATAGTGTTGAAATTTG ATATGAATAGTGGTACTATTGTTGCAGGTTAAAGTGGTTCGGGAGACTATGAATCTTACTTTGGAAATGTGGAAGGAGGT GACTAATGTATCTGAGGATGTTCCTGCTCCGGTTAAGTCCGCATGTGCTTCAGTTGGTAAGGTTCTTTATCCATGTTGGG ATTCCATTACCATTAGTATCACTGTTCCAGTTTGGCTGAATTTAGATTTAGATTTAAGAATGTTCATGATATGAGAATTA TCATAGTTGTGACTTGGGAATCAGTTCGGTATCGGGTATCCCCTTATTATTATCATAGTTGTGACTTGGGAATCCAGATT TAAGAATGTTGGTAAATTTTATTTACAACGCATTTTTCACTTTGTTAAAACATCTAGCTGATCAAAAGTGTTTACATTTC CAATCTTGAAGTTAACATCTCTTTCATGTAATTGTTTCTATATTTTGTTTATATGTTCACCGTTGAAGGAATGAAGCTTT TGTAAGTGCTGGTGAAGTAATGTTATTGATTCTTTGTGTTGGCTTTTTCTTATTGGCACAGAGGATGGTAAAGGTCAGTG TGTCGCTAAAAGTTCACCTTGTATTGGGCCTAAATCTTCTCAATCGAAGAAAACAGTCCCTTCCAGCAGGTCCCCTCCAT CTACAGCTTCATTTGTATCCTCCATCAAAAGAGAGGGGGCTCTAAAGAGTAACAACAAGGATTTGCGAGTGAGGGCAATG CATCAGCAGAATCACAGTGAAATCTCTGATGAGAAACTTGATACTCCAGTATTAAAGCTGCCCCCCTCAAACATCTCTTT GGAAGATGATATTAAAAGGTGTGATTTTGAAGCTTCTAAGCCAGCTCCATATCAAAATGGGGTAAATTCAAGGGTAGATA TCAAGTGTGTTCTCTTTAGCAAGATGTCTGATGAGAAAGTGAGGAAATTTGGTGGTTCGAAACCGCGTGTGGTTCCATGT TATGACGATGATGATCTTGACACAGATGTCAGAGTCAGCAATGTAAGTGAAGCTTGTGAGAGCTCACAAGATGTTGAGGA TTTGTCTTTGATCCGTGAACAGCTAATTCAAATTGAAAACCAGCAATCAAATCTATTAGAACTCCTCCAGGTATATTGTC TTGAATCTTTTCTTTTTTATGACAACATCTTTAGGCCAGTAATGTTCCTGTGTAATTTGAATTTGGAAGTATTCATATCG TGTTTTTCTACTATTCTCTGTTCCTAATTTTCTGACAGTCTGACATGCTTGATTTATTGATACTCCCCCTGGTCCCCGTT TTGTTAGTTCTGGCATTTATAACCTGTGTAATGAACAAGACATTGCTTAACTGTTTGAAGATATGACGAACAAGGCTCAT CTCTTACTTTCTCTTAATATGAGGGATGACATGCTATTTCCATATATGTTCACCATCTCATATAGTCCTTTTCAACCCCC CCCCCCCCCCCCCCCCTTGTGTTTTTGGGCACACAAAGTTAAGTCCTTAGAAAGTGTATAACAATCCTGACCCCTGAGCT AGCTTTTGGGGTAAACTTAGGCATAACCTGAATTGTTATTTGTAAGATGGTATCAGAGTCTATCATAGACTTGTTTATTG GACCACCCACAGATGTCCAGTCATGTAATCTTCACGCTCTAGGTGTCCATCCGCGGGCGTGACGGGGATGTTAAGTTCTT ATGAAGTGTAGAGCATTCCTCACCCCTGAGCTAACATAGACCGGACCCGAAATCTAAGAAACAGTGCAATTAGCAAATTG TGATAAATTCCCTACGGTGTTAAAACCTTATCTGTTAGATGTTTCTACTTTCTCCTAAAAATTAAAAGAAAGTCGTGGAA GTTTATATTTCTGACTTATATCCTCATATTTGAATAAATAGAGATTTATTGGAAGCTCCCAGACTGGGATGAATTCTCTG GAGACACGTGTATATGGTCTAGAGATGGCCCTAGATGAAATATCACATGATTTGGCATTATCAAGTGGCAGGATTCCCAA TACTGATGCCATAGAAGACACATGTTGTAAGCTACCTGGGACTGATTTTCTGAGTTCTAAATTCTGGAAAAGGAATGAAG GTCGGTATTCCACATCACGGAGGTTCTCTTTGGGAAGCTCAGCATCACCAACTGCTGTGCATAATGCAACTGATGGAAAT GGAAGCAGAGAAGTATTAACTGCAAATAACAAAAAAAATCAGCACCGTAGGGGCGGGGGTAGATTTTTGGTAAATCCATT GGCAGAAGTTCAGAGCGATTTGAAGGAGCATCTAGGGCAGCATTCGTACAAAATGTCTACAAACATGGTTCAAGATGCCG AGAGACCACAAGTTAACAGTGCCTGCAGATTTGGTGGCATTTCTTCAACTAGTGGAGCACTGAGGAACCAGAATATCAGG TAACATGTGTGATTTAGTAATTGTTTGTATTATAACACTCTGAATTGTTTATGTAAGAGACAATCTGACAATTTTGTTGT ACTTTTATTCAGGTCATCCGTGTAGGGAAGATTGCATGTCTCAATGGCTATTTAATTGCAGAAAGCATCAAAGGCTCTTT GTAGATGAACCCACAAAAATCAATATTCTTGCCTGTTGGCCAAGGTCTCAATGCAGTAGAGTTGTTTGCTTTAAAGCACT TATTAGAACAGGCTACTTTGTCCGAAATTGTCCACATGAAGGCAGAGTCAGCAGCGTTTGGATTCGGATGGTAAAACAGG CGCAGGAATTTTCTTGATGTGTAGCTTAAAGGAGGAAATGTGTTCCAGGCGAAGGAGTTTTCTTGATATGTATCATAATT ATATTGTCTTTGCCATCGTCTTTAGAAATAGAAAAGAATGCTTGTGCTGTGATATTAGTAGAGTTCTAAGCCTCTTTATG TTGGTTGAATTTGAGCATATGGGGTGCGCGCGCTGAAAATAATCTTTGAGGTATTTGGCATGTTGAGCATATCCAGGGGA AGCTCGTTATTGTAGCCACAAGGGTGAAAATCAAAGTTTAACTTATTTAAGGTCACTTTTTAGGAGTATAATAATAAAGA AAACCCATAACATTCCTCAGGGACTTCACTCATTAAATATTCTTAGAGATAATTTCTCATCAGTGCCGATATCTA
CDS sequence (LotjaGi2g1v0311800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTACCGGCGTCACTCCCTCAGCGGCCCACCTCAACTCATCAGCTCCGGGTCGACTCAGGAGCTCCGGCAACGAGT CACCGCGTGCCTCAACAAGCTCTCCGACCGCGACACTCTCGCCTGCGCCACCGCGGAGCTTGAATCCATCGCTCGAACGC TAACCCATGACTCGTTCTCCTCCTTCCTCTCCTGCATTCACAACACGGATTCCTCTTCCAAATCGCCGGTTCGGAAGCAA TGCGTTCACCTCTTGACCCTCCTCTCGCGTTTCCACGGTGACGCGCTCTCACCGTTCCTCTCCAAGATGATCTCCACCGT CCTCCTCCGCCTCCGGGACACCGATTCCGCCGTCCGATCCGCATGCGTCGACGCCGTCTCCGCCATGTCGTCGCGGATCA CCCGGCCGTCGTTCTCCGTTTCGTTCCTGAAGCCTTTCATGGACGCCCTGGCGCAGGAGCAGGACGGTAACTCTCAGATC GGTGCCGCGCTCTGCCTTGCTGCGGCGGTTGAGGCTGCGCCGGACCCGGATGTTGAGTCTCTCCGGCGGAGCGCGCTGCC GAGGCTGGGGAAGCTCTTGAAGAAAGACACGTGTAAGGCGAGGGCGGCGCTGCTGGTGCTGGTCGGAAGCGTGGTTGCCG CCGGAGGCGCTGCGAGCCGTGGAGTATTGGAGTGGTTGGTGCCGTCCCTCGTTGAGTTCCTGAGCAGTGAGGATTGGACG GTGAGAAAGGCCTCGGCGGAGGCATTGGGGAAGGTGGCTTCTGTAGAGAAAGGCTTGGCGTCGCAGCATAAGGTTCTGTG CGTGGATTCATTGCAGAATCGAAGGTTTGATAAGGTTAAAGTGGTTCGGGAGACTATGAATCTTACTTTGGAAATGTGGA AGGAGGTGACTAATGTATCTGAGGATGTTCCTGCTCCGGTTAAGTCCGCATGTGCTTCAGTTGAGGATGGTAAAGGTCAG TGTGTCGCTAAAAGTTCACCTTGTATTGGGCCTAAATCTTCTCAATCGAAGAAAACAGTCCCTTCCAGCAGGTCCCCTCC ATCTACAGCTTCATTTGTATCCTCCATCAAAAGAGAGGGGGCTCTAAAGAGTAACAACAAGGATTTGCGAGTGAGGGCAA TGCATCAGCAGAATCACAGTGAAATCTCTGATGAGAAACTTGATACTCCAGTATTAAAGCTGCCCCCCTCAAACATCTCT TTGGAAGATGATATTAAAAGGTGTGATTTTGAAGCTTCTAAGCCAGCTCCATATCAAAATGGGGTAAATTCAAGGGTAGA TATCAAGTGTGTTCTCTTTAGCAAGATGTCTGATGAGAAAGTGAGGAAATTTGGTGGTTCGAAACCGCGTGTGGTTCCAT GTTATGACGATGATGATCTTGACACAGATGTCAGAGTCAGCAATGTAAGTGAAGCTTGTGAGAGCTCACAAGATGTTGAG GATTTGTCTTTGATCCGTGAACAGCTAATTCAAATTGAAAACCAGCAATCAAATCTATTAGAACTCCTCCAGAGATTTAT TGGAAGCTCCCAGACTGGGATGAATTCTCTGGAGACACGTGTATATGGTCTAGAGATGGCCCTAGATGAAATATCACATG ATTTGGCATTATCAAGTGGCAGGATTCCCAATACTGATGCCATAGAAGACACATGTTGTAAGCTACCTGGGACTGATTTT CTGAGTTCTAAATTCTGGAAAAGGAATGAAGGTCGGTATTCCACATCACGGAGGTTCTCTTTGGGAAGCTCAGCATCACC AACTGCTGTGCATAATGCAACTGATGGAAATGGAAGCAGAGAAGTATTAACTGCAAATAACAAAAAAAATCAGCACCGTA GGGGCGGGGGTAGATTTTTGGTAAATCCATTGGCAGAAGTTCAGAGCGATTTGAAGGAGCATCTAGGGCAGCATTCGTAC AAAATGTCTACAAACATGGTTCAAGATGCCGAGAGACCACAAGTTAACAGTGCCTGCAGATTTGGTGGCATTTCTTCAAC TAGTGGAGCACTGAGGAACCAGAATATCAGGTCATCCGTGTAG
Protein sequence (LotjaGi2g1v0311800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSYRRHSLSGPPQLISSGSTQELRQRVTACLNKLSDRDTLACATAELESIARTLTHDSFSSFLSCIHNTDSSSKSPVRKQ CVHLLTLLSRFHGDALSPFLSKMISTVLLRLRDTDSAVRSACVDAVSAMSSRITRPSFSVSFLKPFMDALAQEQDGNSQI GAALCLAAAVEAAPDPDVESLRRSALPRLGKLLKKDTCKARAALLVLVGSVVAAGGAASRGVLEWLVPSLVEFLSSEDWT VRKASAEALGKVASVEKGLASQHKVLCVDSLQNRRFDKVKVVRETMNLTLEMWKEVTNVSEDVPAPVKSACASVEDGKGQ CVAKSSPCIGPKSSQSKKTVPSSRSPPSTASFVSSIKREGALKSNNKDLRVRAMHQQNHSEISDEKLDTPVLKLPPSNIS LEDDIKRCDFEASKPAPYQNGVNSRVDIKCVLFSKMSDEKVRKFGGSKPRVVPCYDDDDLDTDVRVSNVSEACESSQDVE DLSLIREQLIQIENQQSNLLELLQRFIGSSQTGMNSLETRVYGLEMALDEISHDLALSSGRIPNTDAIEDTCCKLPGTDF LSSKFWKRNEGRYSTSRRFSLGSSASPTAVHNATDGNGSREVLTANNKKNQHRRGGGRFLVNPLAEVQSDLKEHLGQHSY KMSTNMVQDAERPQVNSACRFGGISSTSGALRNQNIRSSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 201 | 201 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 12 | 294 | 283 | 8.3E-17 | ||
| PANTHER | 12 | 674 | 663 | 0.0 | ||
| PANTHER | 12 | 674 | 663 | 0.0 | – | |
| SUPERFAMILY | 25 | 287 | 263 | 2.84E-27 | ||
| Phobius | 202 | 223 | 22 | - | – | |
| Phobius | 224 | 680 | 457 | - | – | |
| Pfam | 226 | 255 | 30 | 1.7E-5 | ||
| ProSiteProfiles | 226 | 264 | 39 | 9.815 | ||
| MobiDBLite | 323 | 357 | 35 | - | – | |
| MobiDBLite | 327 | 357 | 31 | - | – | |
| Coils | 485 | 505 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. |
Expression pattern of LotjaGi2g1v0311800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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