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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0328900 |
| Transcript ID | LotjaGi2g1v0328900.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80420163..80423974) extracted from Lotus japonicus Gifu genome v1.2.
AGTAATGTCACAAGAGACTCTTACACACCACTTCACTTCTGTTTCATTTGCCATTTATGATCAAACAATTAGACACCATT TCTCTAAGTATATGGTTTTCTTATTTGTTTTATGTTAATCTATTTTGGTTTTCATAATTCACTGTTATAATTGCTTTTTC TTACCAAAGACCATGTAATAATGATAATGATGTATGTTTGCAATTCTATCAGTTCTGTGTGAGAGCTTCAGCTAGTAGCA CCGATGATGGGGAAAGGACAATTATAAGGAAAGAGAAAGATGAGTGGAAGATCAAATACTCAAGCAAGAAACCAGTAACC CCTTTGCTGGACACAATCAACTACCCAGCTCATATGAAGAATCTTTCCACACAGGTAAACCATTTGAAACTGGTTATCAT TTAATTAGTCTTGGAGGCCATGTGAACTGAAGATCTTGCATAAATTTATTCAATCTAAATCACAAGTTATATTAAAATAA TAACAAAGATATAAAAATTCAAACTATATTCATTTGAATACTAGTTTAGGCTTTTGATTGGTTAAAAGAAATAGTCAAAC AGACACTGTACTGTATTTATGCAAGAATAATTCTGAAATGTTACCTATCCAGGCTGGTGCATCAGTTATTTGTCTCTAGT TAGTTTCTGATTTTTTGTCTTTAAAACATTATGCATGTATTTGTCAGGATCTTGAACAACTTGCTGCAGAGCTAAGGGCA GACATTGTACACACTGTTTCCAACTCTGGTGGGCATCTTAGCTCAAGCTTAGGAGTAGTGGAATTAACAGTGGCTCTGCA TCATGTTTTCAACACCCCAGAAGACAAGATTATATGGGATGTGGGGCACCAGGTCAGTCTATGATTCTCTTCTTTGTTCC TGTTTCTGAATAGAAATCAAATGGAATAATAAAAAGGTAACTTAAACTGCATTCATGCAGTGAAATTTGCAAATTTGCTC TTACAAAGAAATTTATGGCATGTTCGATTACTGGTTTGTGAAACATAAACATGAAAGAAGGATTTGATTTTAACAATTAA AAATTGAGGGGCTATCAAAAAATTATTGGGGGATCAAAATCATACATCAACCGTATTAAAGGGACCAAAAGCGCAATTAA GAAAGAAAAACTTGTTTGGTAGGAATTGTATTGAAAAATTAATTTTAAAAATAGATTTTGTTTTTAGTTTTTAAAACTAA AATTTAAAAAATATTTCATGGCTTTTTCTGTTTTTAATTTTCCAGCCATAAGTTTTTAACTTCACAAAATATCTCATTCA AGCCGTTTTTCTTATGAAAAATATTTTTTTAAACTTGTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC TTAAAAATTGATAAGAGAACCAAAGAAGCCCTTCATCTTTATTTCCCTTTTTACATGTCTTTTCTATAGCTGTCAAGTGT CACTTATTGTGTAAGATGGTCTCAGATGCAATAAAATTGCAGGCATATGCACACAAGATTCTCACAGGTAGAAGGTCTAG GATGCCCACTATTAGGAAAACCTTGGGACTAGCAGGCTTTCCTAAGAGAGACGAAAGCGTACATGATGCTTTTGGGACAG GGCATAGTTCTACAAGTATATCTGCTGGTCTTGGTAAGATAATCTTAAACATCAAACATTTTATGAAACACGTGCACACA TCCAAGAATCTCAAAAGGCTGGACAACAAACCTCAATGTTCTCAGTTTTTGTACAAAAAATTGTAGGCATGGCAGTTGCA AGGGATATACTAGGAAAGAACAACAGTGTCATCTCAGTGATCGGAGATGGGGCAATGACCGCTGGCCAAGCTTATGAAGC CCTGAACAATGCAGGATTCCTTGACTGTAACATGATAGTTATACTTAACGACAACAAGCAAGTCTCTTTACCAACTGCTA CAGTTGATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTAGTACTTTAGCCAAAATTCAAGCAAGTACAGAATTTCGCAAA CTCAGAGAAGCTGCAAAAGTATACTTCTCAAACTTTTCTTATAAAAAAGAACTTAGGGTTTCATTTCTTGTGTCAAATTT CATTAGACCGTGGCATCTGACTCCAATTTTATTTGATAAAGACCATTACAAAGCAAATAGGAGGACAGACGCACCAGGTT GCGGCAAAGGTAGATGAGTATGCAAGAGGTATGATCAGTGCATCCGGCTCTACACTTTTTGAGGAGCTCGGCTTATACTA CATCGGCCCTGTGGATGGTCACGACATTGAAGGTCTGGTCACCATTCTTGAAAAGGTGAAGGCAATGCCTGTCCCTGGTC CAATTTTGATTCATATTGTAACAGAGAAAGGGAAGGGATACCCACCAGCAGAAGCAGCTGCTGATAAAATGCACGGTGAG AATCGAACTTTATTTATTTTGTCTTAACAGGATTATTAGCAGAAACTCTGAAAGGAGGCTCATATTGTCACACTTTCAGG TGTTGTTAAGTTTGAACCAGCAACAGGCCGTCAGTTTAAGCCAAAATCCTCTACTTTGTCATATACCCAGTACTTTGCTG AGTCATTGATCAAGGAAGCTGAAATAGACAACAAGATAGTAGGGATTCACGCCGCAATGGGTGGGGGAACAGGTCTAAAT TATTTCCAGAAAAGGTTTCCAGACCGCTGTTTTGATGTGGGGATAGCTGAACAACACGCCATTACATTTGCAGCTGGATT AGCCGCAGAAGGTCTCAAGCCATTTTGTGCCATCTATTCATCATTCCTGCAACGTGGATATGATCAGGTTAGCCAACAAC AATAGACAAATATAGCAGATACTAATTTTATTCTAGTGTTTCTGTTAAACTGTCACAAATCATCTCACATTTTGTAATTT GAATTGTGTATGAAGGTGGTCCATGATGTAGATCTTCAGAAACTACCAGTTCGATTTGCTATTGACCGAGCTGGTTTGGT TGGAGCTGATGGACCAACCCACTGTGGAGCATTTGATATCACATTCATGGCCAGCTTGCCCAACATGGTGGTCATGGCTC CATCTGATGAAGCTGAACTGATGCACATGGTTGCGACAGCAGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTTCCA AGGGGCAACGGGATTGGAGCCACCTTGCCGCTCAATAACAAAGGAACTCCACTTGAGGTTAGCATGAGTAACGAACAGGC ATTTTCCATACTTAATGCTAATAGATAAGTAATTAAATGGGGATTTTTTTGCTTATATAGATAGGAAAGGGCAAAATTCT GACAGAAGGCAGCAGAGTTGCCATTTTAGGATATGGTTCTGCAGTTCAACAATGCTTGCACGCAGCACAAATTCTCGAAG AACATGACATTTCTGTGACAGTCGCTGATGCAAGGTTTTGCAAACCCTTGGATATTGATCTCATTAAGCTATTGGCTAAG GAGCACGAGTTTGTCATCACAGTGGAAGAAGGTTCTATCGGAGGTTTTGGATCACATGTTTCACAGTTCCTAAGCATAGC TGGCCTCCTGGATGGACCGCTGAAGGTAAACCTTCCTTTTATGTCGACAGGTCACTCTTTCCATGATTTTTGTTTTCAGC TTCTTAGTTCTACTACATGGCTCCATTTCTCTAGTTGGTAATCCTCATTTGACATTTTCCTGCAGTGGAGAGCAATGACA CTTCCTGACAGATACATAGAGCATGGATCACCACAAGATCAGATGGATGAAGCGGGACTTACATCAAAGCATATTGTAGC AACAGTCTTGTCTCTTCTGGAAAGGCCAAAAGAAGCTCTCTTATTCAAGTAA
CDS sequence (LotjaGi2g1v0328900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACAAGAGACTCTTACACACCACTTCACTTCTGTTTCATTTGCCATTTATGATCAAACAATTAGACACCATTTCTC TAAGTATATGTTCTGTGTGAGAGCTTCAGCTAGTAGCACCGATGATGGGGAAAGGACAATTATAAGGAAAGAGAAAGATG AGTGGAAGATCAAATACTCAAGCAAGAAACCAGTAACCCCTTTGCTGGACACAATCAACTACCCAGCTCATATGAAGAAT CTTTCCACACAGGATCTTGAACAACTTGCTGCAGAGCTAAGGGCAGACATTGTACACACTGTTTCCAACTCTGGTGGGCA TCTTAGCTCAAGCTTAGGAGTAGTGGAATTAACAGTGGCTCTGCATCATGTTTTCAACACCCCAGAAGACAAGATTATAT GGGATGTGGGGCACCAGGCATATGCACACAAGATTCTCACAGGTAGAAGGTCTAGGATGCCCACTATTAGGAAAACCTTG GGACTAGCAGGCTTTCCTAAGAGAGACGAAAGCGTACATGATGCTTTTGGGACAGGGCATAGTTCTACAAGTATATCTGC TGGTCTTGGCATGGCAGTTGCAAGGGATATACTAGGAAAGAACAACAGTGTCATCTCAGTGATCGGAGATGGGGCAATGA CCGCTGGCCAAGCTTATGAAGCCCTGAACAATGCAGGATTCCTTGACTGTAACATGATAGTTATACTTAACGACAACAAG CAAGTCTCTTTACCAACTGCTACAGTTGATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTAGTACTTTAGCCAAAATTCA AGCAAGTACAGAATTTCGCAAACTCAGAGAAGCTGCAAAAACCATTACAAAGCAAATAGGAGGACAGACGCACCAGGTTG CGGCAAAGGTAGATGAGTATGCAAGAGGTATGATCAGTGCATCCGGCTCTACACTTTTTGAGGAGCTCGGCTTATACTAC ATCGGCCCTGTGGATGGTCACGACATTGAAGGTCTGGTCACCATTCTTGAAAAGGTGAAGGCAATGCCTGTCCCTGGTCC AATTTTGATTCATATTGTAACAGAGAAAGGGAAGGGATACCCACCAGCAGAAGCAGCTGCTGATAAAATGCACGGTGTTG TTAAGTTTGAACCAGCAACAGGCCGTCAGTTTAAGCCAAAATCCTCTACTTTGTCATATACCCAGTACTTTGCTGAGTCA TTGATCAAGGAAGCTGAAATAGACAACAAGATAGTAGGGATTCACGCCGCAATGGGTGGGGGAACAGGTCTAAATTATTT CCAGAAAAGGTTTCCAGACCGCTGTTTTGATGTGGGGATAGCTGAACAACACGCCATTACATTTGCAGCTGGATTAGCCG CAGAAGGTCTCAAGCCATTTTGTGCCATCTATTCATCATTCCTGCAACGTGGATATGATCAGGTGGTCCATGATGTAGAT CTTCAGAAACTACCAGTTCGATTTGCTATTGACCGAGCTGGTTTGGTTGGAGCTGATGGACCAACCCACTGTGGAGCATT TGATATCACATTCATGGCCAGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCTGAACTGATGCACATGGTTG CGACAGCAGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTTCCAAGGGGCAACGGGATTGGAGCCACCTTGCCGCTC AATAACAAAGGAACTCCACTTGAGATAGGAAAGGGCAAAATTCTGACAGAAGGCAGCAGAGTTGCCATTTTAGGATATGG TTCTGCAGTTCAACAATGCTTGCACGCAGCACAAATTCTCGAAGAACATGACATTTCTGTGACAGTCGCTGATGCAAGGT TTTGCAAACCCTTGGATATTGATCTCATTAAGCTATTGGCTAAGGAGCACGAGTTTGTCATCACAGTGGAAGAAGGTTCT ATCGGAGGTTTTGGATCACATGTTTCACAGTTCCTAAGCATAGCTGGCCTCCTGGATGGACCGCTGAAGTGGAGAGCAAT GACACTTCCTGACAGATACATAGAGCATGGATCACCACAAGATCAGATGGATGAAGCGGGACTTACATCAAAGCATATTG TAGCAACAGTCTTGTCTCTTCTGGAAAGGCCAAAAGAAGCTCTCTTATTCAAGTAA
Protein sequence (LotjaGi2g1v0328900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQETLTHHFTSVSFAIYDQTIRHHFSKYMFCVRASASSTDDGERTIIRKEKDEWKIKYSSKKPVTPLLDTINYPAHMKN LSTQDLEQLAAELRADIVHTVSNSGGHLSSSLGVVELTVALHHVFNTPEDKIIWDVGHQAYAHKILTGRRSRMPTIRKTL GLAGFPKRDESVHDAFGTGHSSTSISAGLGMAVARDILGKNNSVISVIGDGAMTAGQAYEALNNAGFLDCNMIVILNDNK QVSLPTATVDGPATPVGALSSTLAKIQASTEFRKLREAAKTITKQIGGQTHQVAAKVDEYARGMISASGSTLFEELGLYY IGPVDGHDIEGLVTILEKVKAMPVPGPILIHIVTEKGKGYPPAEAAADKMHGVVKFEPATGRQFKPKSSTLSYTQYFAES LIKEAEIDNKIVGIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAITFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVD LQKLPVRFAIDRAGLVGADGPTHCGAFDITFMASLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGATLPL NNKGTPLEIGKGKILTEGSRVAILGYGSAVQQCLHAAQILEEHDISVTVADARFCKPLDIDLIKLLAKEHEFVITVEEGS IGGFGSHVSQFLSIAGLLDGPLKWRAMTLPDRYIEHGSPQDQMDEAGLTSKHIVATVLSLLERPKEALLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 711 | 695 | 0.0 | – | |
| PANTHER | 17 | 711 | 695 | 0.0 | ||
| SUPERFAMILY | 65 | 453 | 389 | 1.54E-72 | ||
| Hamap | 68 | 702 | 635 | 42.062 | ||
| Pfam | 69 | 354 | 286 | 2.1E-111 | ||
| TIGRFAM | 71 | 701 | 631 | 1.9E-231 | ||
| ProSitePatterns | 94 | 113 | 20 | - | ||
| CDD | 105 | 360 | 256 | 4.80238E-115 | ||
| Gene3D | 388 | 560 | 173 | 1.6E-65 | – | |
| SUPERFAMILY | 388 | 579 | 192 | 5.44E-59 | ||
| Pfam | 391 | 552 | 162 | 9.0E-41 | ||
| SMART | 391 | 556 | 166 | 8.1E-68 | ||
| CDD | 397 | 550 | 154 | 1.73407E-71 | – | |
| ProSitePatterns | 497 | 513 | 17 | - | ||
| SUPERFAMILY | 565 | 701 | 137 | 2.62E-36 | ||
| Gene3D | 570 | 702 | 133 | 5.0E-36 | ||
| Pfam | 570 | 693 | 124 | 8.8E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi2g1v0328900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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