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LotjaGi2g1v0356500.2

Overview

Field Value
Gene ID LotjaGi2g1v0356500
Transcript ID LotjaGi2g1v0356500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi2g1v0356500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:83296752..83298863) extracted from Lotus japonicus Gifu genome v1.2.

ATGCGCAAAGTGAAGTATACCCAGCAGAATTTCCATGACAAGCTCTCTGCGATCATTGATGAGTTTCCTCGGATGGATGA TATTCATCCTTTCTATGGAGATCTCCTCCATGTGCTCTACAACAAAGATCATTACAAGCTTGCGCTTGGACAGATCAATA CCGCGAGGAATCTTATTGGGAAGATTGCGAAAGACTATGTGAAGTTGTTGAAGTATGGTGACTCGCTGTATCGGTGCAAG AGCCTGAAGGTTGCTGCCCTTGGTCGCATGTGTACTGTGCTTAAGAGGATTGCTCCGAGTTTGGCTTACCTCGAACAGAT TCGACAACACATGGCTAGGCTTCCGGCGATTGATCCAAATACAAGGACTGTCTTGATTTGTGGATACCCCAATGTTGGCA AGAGCTCATTCATTAATAAGATTACTAGAGCTGATGTGGAAGTGCAGCCCTATGCTTTCACTACAAAGTCTCTCTTTGTA GGTCATACAGACTATAAGTACCTAAGGTACCAAGTAATTGACACACCGGGGATTTTGGACAGGCCTTTCGAAGACCGCAA TATTATTGAAATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCTGCAATATTGTTTTTCTTGGACATCTCTGGTTCTT GTGGTTACAGTATTGCTCAGCAAGCAGCCCTATTTCACAGCATTAAGTCATTGTTTCTGAACAAGCCGTTGATTATAGTA TGCAACAAGACTGACTTGCAACCACTGGAGGGGATATCTGAGGAAGACATGAAGTTGGTAATGGAGATGAAATCTGAAGC CTTGAAGACTATAGTTGGCCAAGGAGGTGAGGCTACAGATGATGACAGTGTGCTGTTGACCATGAGCACTTTGACAGAGG AAGGGGTAATTGCAGTGAAAAATGCAGCATGTGAGAGGCTATTGAATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAA ATTAATGATTGCTTGAATAGGTTTCATGTTGCTATCCCAAAGCCACGTGACCAGAAAGAAAGGCCACCATGTATTCCTGC AGCAGTTTTAGAGGCTAAAGCTAAGCAAGCGGCTGAGAAGGAAAAGAGAAAAACTGAGAAGGATCTGGAGGAGGAAAATG GAGGGGCGGGTGTATACTCAATGAACCTGAGAAAGCATTATATTTTAGCCAATGATGAATGGAAAGAAGATATACTGCCA GAAATTTTGGATGGACACAATGTGTACGATTACATTGATGTTGATATTTTACAGAGGCTTGAAGAGTTGGAAAGAGAAGA GGGGTTAAGACTGGCAGAAGAGGAAGATGATGATTTTGAGATAGATGGAACTGGTTTGGCACCAGAACAACTAGCAACTT TAGCTGAGATTAGGAAAAGGAAAAAATTGCTCATCCAACAGCATAGGATAAAAAAGAGCACTGCCGAGAGCCGACCAATA GTTCCAAGGAAATTTGACAAAGACAAGAAGTTCACATCAGAAAGAATGGGAAGGGACTTTTCATCTGTGGGGCTTGATCC CACTTTGGCAATCAAGAGAGCGCGTAGCAGATCTGTCTCTGTGAGAGGTCGGAAAAGGGAAAGAAGTGCTGATGGTGGAG ATGGAATGGATATTGATGGTGACACACCTAGCAAGAAGCTGCGTCTAAGTAGATCCAGGTCCAGGTCAGTGTCACGCCCA CCCAATGAAGTTGTGCCTGGAGAAGGCTTCAGAGATTCTGCTCAAAAGGGCAAGGCAATTAAACTTGCCAAGAAATCTGT CAAAAAGAGAAACAAGGAAGCCCGTCGTGGAGAAGCTGATAGGGTCATACCTAATCTGAAGCCCAAGCATTTGTATTCTG GGAAGCGCTCGACTGGGAAAACTGATAGGCGTTAAACAGGTTATGTTCTTTGCCTTCACTGCTAGATTTAGTTATCATGT ACATGTAGGCACTCAGCAAAAATATCATTTGGCTGCTCATGTAGTAGTTGAATGTTGATTTTTTCACATAATCTCAGTTT TATTCATTCGTAGTTGATTTCTTTTGCGGATGTTTCAGATTTGCCTAATTGTATACATTTTAATTTTTTATGTTCGACGA TTTTCAGTATTCACCAACCACCTATTCAGTAA 

CDS sequence (LotjaGi2g1v0356500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCGCAAAGTGAAGTATACCCAGCAGAATTTCCATGACAAGCTCTCTGCGATCATTGATGAGTTTCCTCGGATGGATGA TATTCATCCTTTCTATGGAGATCTCCTCCATGTGCTCTACAACAAAGATCATTACAAGCTTGCGCTTGGACAGATCAATA CCGCGAGGAATCTTATTGGGAAGATTGCGAAAGACTATGTGAAGTTGTTGAAGTATGGTGACTCGCTGTATCGGTGCAAG AGCCTGAAGGTTGCTGCCCTTGGTCGCATGTGTACTGTGCTTAAGAGGATTGCTCCGAGTTTGGCTTACCTCGAACAGAT TCGACAACACATGGCTAGGCTTCCGGCGATTGATCCAAATACAAGGACTGTCTTGATTTGTGGATACCCCAATGTTGGCA AGAGCTCATTCATTAATAAGATTACTAGAGCTGATGTGGAAGTGCAGCCCTATGCTTTCACTACAAAGTCTCTCTTTGTA GGTCATACAGACTATAAGTACCTAAGGTACCAAGTAATTGACACACCGGGGATTTTGGACAGGCCTTTCGAAGACCGCAA TATTATTGAAATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCTGCAATATTGTTTTTCTTGGACATCTCTGGTTCTT GTGGTTACAGTATTGCTCAGCAAGCAGCCCTATTTCACAGCATTAAGTCATTGTTTCTGAACAAGCCGTTGATTATAGTA TGCAACAAGACTGACTTGCAACCACTGGAGGGGATATCTGAGGAAGACATGAAGTTGGTAATGGAGATGAAATCTGAAGC CTTGAAGACTATAGTTGGCCAAGGAGGTGAGGCTACAGATGATGACAGTGTGCTGTTGACCATGAGCACTTTGACAGAGG AAGGGGTAATTGCAGTGAAAAATGCAGCATGTGAGAGGCTATTGAATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAA ATTAATGATTGCTTGAATAGGTTTCATGTTGCTATCCCAAAGCCACGTGACCAGAAAGAAAGGCCACCATGTATTCCTGC AGCAGTTTTAGAGGCTAAAGCTAAGCAAGCGGCTGAGAAGGAAAAGAGAAAAACTGAGAAGGATCTGGAGGAGGAAAATG GAGGGGCGGGTGTATACTCAATGAACCTGAGAAAGCATTATATTTTAGCCAATGATGAATGGAAAGAAGATATACTGCCA GAAATTTTGGATGGACACAATGTGTACGATTACATTGATGTTGATATTTTACAGAGGCTTGAAGAGTTGGAAAGAGAAGA GGGGTTAAGACTGGCAGAAGAGGAAGATGATGATTTTGAGATAGATGGAACTGGTTTGGCACCAGAACAACTAGCAACTT TAGCTGAGATTAGGAAAAGGAAAAAATTGCTCATCCAACAGCATAGGATAAAAAAGAGCACTGCCGAGAGCCGACCAATA GTTCCAAGGAAATTTGACAAAGACAAGAAGTTCACATCAGAAAGAATGGGAAGGGACTTTTCATCTGTGGGGCTTGATCC CACTTTGGCAATCAAGAGAGCGCGTAGCAGATCTGTCTCTGTGAGAGGTCGGAAAAGGGAAAGAAGTGCTGATGGTGGAG ATGGAATGGATATTGATGGTGACACACCTAGCAAGAAGCTGCGTCTAAGTAGATCCAGGTCCAGGTCAGTGTCACGCCCA CCCAATGAAGTTGTGCCTGGAGAAGGCTTCAGAGATTCTGCTCAAAAGGGCAAGGCAATTAAACTTGCCAAGAAATCTGT CAAAAAGAGAAACAAGGAAGCCCGTCGTGGAGAAGCTGATAGGGTCATACCTAATCTGAAGCCCAAGCATTTGTATTCTG GGAAGCGCTCGACTGGGAAAACTGATAGGCGTTAA 

Protein sequence (LotjaGi2g1v0356500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRKVKYTQQNFHDKLSAIIDEFPRMDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCK SLKVAALGRMCTVLKRIAPSLAYLEQIRQHMARLPAIDPNTRTVLICGYPNVGKSSFINKITRADVEVQPYAFTTKSLFV GHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDISGSCGYSIAQQAALFHSIKSLFLNKPLIIV CNKTDLQPLEGISEEDMKLVMEMKSEALKTIVGQGGEATDDDSVLLTMSTLTEEGVIAVKNAACERLLNQRVEIKMKSKK INDCLNRFHVAIPKPRDQKERPPCIPAAVLEAKAKQAAEKEKRKTEKDLEEENGGAGVYSMNLRKHYILANDEWKEDILP EILDGHNVYDYIDVDILQRLEELEREEGLRLAEEEDDDFEIDGTGLAPEQLATLAEIRKRKKLLIQQHRIKKSTAESRPI VPRKFDKDKKFTSERMGRDFSSVGLDPTLAIKRARSRSVSVRGRKRERSADGGDGMDIDGDTPSKKLRLSRSRSRSVSRP PNEVVPGEGFRDSAQKGKAIKLAKKSVKKRNKEARRGEADRVIPNLKPKHLYSGKRSTGKTDRR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam 1 118 118 6.2E-41
PIRSF 1 624 624 5.3E-240
Gene3D 1 114 114 1.8E-45
PANTHER 1 624 624 3.5E-296
PANTHER 1 624 624 3.5E-296
SUPERFAMILY 2 263 262 3.62E-38
Gene3D 115 326 212 3.0E-57
ProSiteProfiles 122 308 187 39.197
CDD 122 308 187 9.64719E-98
PRINTS 124 144 21 2.0E-8
PRINTS 145 163 19 2.0E-8
PRINTS 172 187 16 2.0E-8
Pfam 189 245 57 1.6E-24
Coils 347 375 29 -
Pfam 363 416 54 2.2E-27
Coils 417 437 21 -
MobiDBLite 515 624 110 -
MobiDBLite 523 548 26 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Cellular component Nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0356500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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