Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0367400 |
| Transcript ID | LotjaGi2g1v0367400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0367400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86476681..86481084) extracted from Lotus japonicus Gifu genome v1.2.
AAACAGAAGCCAAAGTCCACAACCAACGCCATAGCCCATCTCAAGCTTGTAGCATCCGCCAAAAAGGGAAAGAACCAACA TCGGAAAAGACGTCGTTGCACCCATCACCTCACCCCGAGAGGAAATAGGACTCCGACAAAAAAGATGATCAAGATCCTCC GCATGAGCAGAACGTCTAACCACATTGTAAGTTTGTAACTACCCCAAGGTTGTGTCACTCACTCCTTAAATTAGTGGAAA TCGCATCCTTACTAATAAGGCAAAAAAAATGCCAATCTTTTACATTGTGTTACCTCATTTTACTCAAAATATACCCTCCA CTAAATTTTTTTCCTAGAGTTAACTCACCTCATATTTATGATTGGATGATAATAAAATTCATCCGATTGACGACAAATCC AACCCGAATTTTTATCATTGAATCAGATTAGGTTGGATGGTTTCATTGGATTGACCCGGCCATGTGCACCCTACATAAGA GCATGTTGTTGACTCGTCCTAACCCAATGAAGCTCCTCCGTCTTTCAACCTGTCTCCGAAACCGCTTGTCGCCGCCGAAC GTCATCATCCGCGGCTTCACCGCCGTTGGGAACTTACAGTCAGAATCAAAGAAGGTGGGGGGCGCGTTTGAGTTGTTGAA AGCAGGGACCGAGAAGGGTGTGGAGTCAAATTCAGTTTCGGGAAGGAGGATCAGAGAGGCTGAGCAGGTGGTTGATGAGA CAACAACTTACAACGCTCTTGTTCTTGCATATTGCTGTGATGAGAGGGTTGATGAGGCTATGGGGATTTTAAGGTGCATG ACTGAGAGGGGTTTGAAGCCAAATTTGATTTCCTTCAATGCAGTTGTTCAGGGTTTATGCGGGAAAGGGAGGATGGAAGA GGCTGAGGAGGTGGTTGAAGAGATGAATCAAAAGGATTTGGCCCCTGATGAGAGGACTTACACGTCTCTCATTCATTTGT TCTGCGACAAGGGGCACCCTGGTAAGGCTCGCAAGGTTTTGAGTGAAATGATTGATAGTGGGTTTTCGCCTTCGGTTGCT ACATACAACAGGCTTATTCGTCGGTTGAGGCTTGAGGATGCTGTGGGGGTTTTTAGGGGCATGACTGAGAGGGATTTGTC CCCTGATGTTGTTACTTATAACACTCTTATTTCTAAGTTTTGCAAACTCAAGGAGCCCGACCTGGAGAAGGCGTTTGAAA TGAAGGCGGAGATGGTTCACAAGGGCATCTTGCCCGATGCTGACACATATGAGCCGCTTATACGTACCCTGTGCCTGCAG CAAAGACTGTCGGAAGCTTATGATCTCTTCAGAGAGATGCTGCGCTGGGGTGTGTCCCCAAATAACGAAACTTATACTGG TTTGATGAATGCTTATCGTATCGAAGGTCAGTTCAGTAAGGCTTTTCATTTGCAAGATGAAATGACACACAAGGGTTTTT TGCCTGGTTTTGTTACTGGGTTTTCGCCGTCTCATGTTACATACAACGCCATTATTTATGGCCTTTGCTTATTGGGCCGG GCTGAGGAGGCTCTGGGGGTTTTGAGGGGCATGCCTGAGATCGGGTTGTCCCCTGATGCTGTTAGTTATTGCACTGTTAT ATTAGGGTTTTGCCGAATCCGGGAGCCAGGGAAGGCGTATGAGTTGAAGGTGGAGGTAGATGAAAATATGATCTCGTGGC TGGGGATCTGGGGGCTGTTTGAAGACACACGAAAATCACTTATGCAAGGCCTGTCGAATGAGGATACCTTTTCTAGTTTG ATGAATGATTATTTAGCTCAAGGTAACTTGGAAAAGGCTTTTGACCTGAAATTTGAAATGTCACACTATGGTTATTTGCC AGAGTATGTTTACTATAGTATATTTGTGAATGGACTTAATAAGAAAGCTAGGACAAGGGAAGCTAAGGAACATCTTTTGT TTTTGATTTCTCATTGGCATTTGCTGTATTTTATAATATATGATTCTCTGATAGAGAACTGCAGTAATAATGAATTTAAG AGTGTGGTAGGGCTTGTCAAAGGTTTCGGAATGAGGGGTTTAGTGAATGAAGCCGCCAGAGCTCGTGTCACAATGTTTGA GGGGAATTATAAGCCAGATGGAGCCGTTTATAATTTATTAATATTTGAACATTCTAGATGTCGTAATGTTCATAAGGCGT ATGATATGTACATGGAGATGGTGCATTATGGTTTTGCTCCTCATATGTTCTCTGTACGTGCTCTTATTTGGGCTCTATAT CATGGTGGAAGGTACAATAAGATGATTTGGGTAATTCAAAACACATTGAGGAGCTGTAATCTCAATGATTCCGAGCTACT TAAAGTACTTAATGAAATTGACGTCAAGGAAGGTGAAACTGGGGCTCTTGAGGTTGTGCTAGCTGAAATAGCCATGGATG GGCTGTTACTTGATGGTGGAAAGTGTTCATATGCTTCAGCAAGAACCTAATATATTTGGTTTTTCTTATTTCTCTTGATA TATATATTTGCTCTGCATTATTTCTTGAGGCCTGACCATATAATTGTGCAAATATGATATAACAACTATAATGCTCGAGA TGCTATAAAAGCTTCATTAATGCTAGAGATACTTCAAGCCTGCATGTTTTTTGATATTTTATATGTAATCTGGTTCTGTT CCCCCATTTCTTATATTCTGTTCTGAAAATGGAGAAGAAATGTTGGATTTAGTTTTCTATTTGGTGAAAAATGTTTAGGC ATACTGGTTCTGAAGTAGAAGTGCTTCAGTTCAGTTTGAAAGGGTTTGACTTAGCTAATTCTTTTCTATTTCCTTATACA TAACATTTTTGGTCAATTTCATTATGATGTTAAGTTTGATGTTGTACATGCTTTGTGTTTTTGGCATATGTGACCTTTTC CCAGGCAGAAGCTTTACAAGCCCTGCACTTATGTTATCGAAAGGTGATGAATACTAATCATATTTCTATAACACTGGTTG GGTAAGTTCTCTCAATAATGGTGTGAACTCATGATTTAACCCTCACAATGCTTTGGTTCAAAAGTTGCGTTTGCTTAAAC AGTTTAATTAAGCGCATACTGTGATGAATACTAATCATATTTCTATAACACTGTTATGGTTTGGATCAGATGACCAATGG AGGTTTATTAATACATAATAGTAATACTATATGTATGCATCATATAGCCCTTGGATCATTGCGCATGTTTATTATCCATA ATACTAATGCAGTGACATTCAATTTCTCCTCTCTCCTTTTTTGTTTTAATCCTCTCTTTTTTCTGCAATAGCATGTTTCT GTGCATAGCAAGTTTCCATATTATGACTTTTTTCGGGGACAAATTTAAGTCCCTTTATGGGAAAGATTCCTGATTCCATC AAAAGGTAAATAATTATATTAACTCCAACTATTGTGGTTTTCCTGTGATCTAATACTGTTAGAAACTGAAATTAGGCCTT AGGGAAATACAGAAACTCACTTCCAAACTGCATTTGTACGATATTGATGTTGAATAATAAATTATCATGAAGCGAACAAG TGAATGGAGGTTGTGGTGACTATAATCTAGAGGCAGCATGAGGTATGGAGGTTGTGATTCCCTGCTTACAGTGGAATTTT ACCCTTATGTCTGGAGATATGATTGTCTCCCCTCCTCTCTGTTCCTGAAGCAGAGGATGTATCACTAGATCTTGAGACCA TTAGGCTGTTGGGTATTCATTGATGGTCTTAGTATCTAGTTGAGCATATCATAAATCTATCACCCTATCTCTGTCCAATT CTGGAGCCATTGATTCCATAAATCTATCACCCTATCTCTCCCTATTGGTCATAAACTCATAGTGCTTACACAAATATTTA ATCACTGTAGAAACTATTATCTTCTTCCAATCCTATAACCATTTAATTTCATCTGCCTCCTTGGTGCCTTGTTTGAATTT GACTGGGTATTGGTGTTCCATTTGGTCATCAGAAAATTAATAGAAAAGTGAAAAGGATGGAAAGTCATGGCATATTACCC CCCCCCCCCCCCCTCTCAATTATCATGTGATTACAAGATGTATGCTTTGTTTAAACTTTAAACATGTTGACTTCGTTTAA GGCTTAGATTATTGATTATTTGCCTGATCTGATCTCTTTATGTTCCCCCTCCCTCCATGTCCTTCTTCCACTCTTTTCAC GTGAATTGTTATTAACTGATATGTCTTAATCGTTCGGCCATATTTTTCTTTCTCAGATGAATCCGTTAGTTGAGCATATC AGGGGAACCGAGCGGTGGACGCGTTAGCTACTTTATCTTTTTCTTTGGGTGACTTTGTTTGGATTGAGGAGATTCCTCAA CAGTTATTTGGCATTGTCCAATCTGATGTAATGGCATTTAGGCCTCTCGTTTCTTCTTAATTGAATGGAGTTGGTTTCAA AATT
CDS sequence (LotjaGi2g1v0367400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCACCCTACATAAGAGCATGTTGTTGACTCGTCCTAACCCAATGAAGCTCCTCCGTCTTTCAACCTGTCTCCGAAA CCGCTTGTCGCCGCCGAACGTCATCATCCGCGGCTTCACCGCCGTTGGGAACTTACAGTCAGAATCAAAGAAGGTGGGGG GCGCGTTTGAGTTGTTGAAAGCAGGGACCGAGAAGGGTGTGGAGTCAAATTCAGTTTCGGGAAGGAGGATCAGAGAGGCT GAGCAGGTGGTTGATGAGACAACAACTTACAACGCTCTTGTTCTTGCATATTGCTGTGATGAGAGGGTTGATGAGGCTAT GGGGATTTTAAGGTGCATGACTGAGAGGGGTTTGAAGCCAAATTTGATTTCCTTCAATGCAGTTGTTCAGGGTTTATGCG GGAAAGGGAGGATGGAAGAGGCTGAGGAGGTGGTTGAAGAGATGAATCAAAAGGATTTGGCCCCTGATGAGAGGACTTAC ACGTCTCTCATTCATTTGTTCTGCGACAAGGGGCACCCTGGTAAGGCTCGCAAGGTTTTGAGTGAAATGATTGATAGTGG GTTTTCGCCTTCGGTTGCTACATACAACAGGCTTATTCGTCGGTTGAGGCTTGAGGATGCTGTGGGGGTTTTTAGGGGCA TGACTGAGAGGGATTTGTCCCCTGATGTTGTTACTTATAACACTCTTATTTCTAAGTTTTGCAAACTCAAGGAGCCCGAC CTGGAGAAGGCGTTTGAAATGAAGGCGGAGATGGTTCACAAGGGCATCTTGCCCGATGCTGACACATATGAGCCGCTTAT ACGTACCCTGTGCCTGCAGCAAAGACTGTCGGAAGCTTATGATCTCTTCAGAGAGATGCTGCGCTGGGGTGTGTCCCCAA ATAACGAAACTTATACTGGTTTGATGAATGCTTATCGTATCGAAGGTCAGTTCAGTAAGGCTTTTCATTTGCAAGATGAA ATGACACACAAGGGTTTTTTGCCTGGTTTTGTTACTGGGTTTTCGCCGTCTCATGTTACATACAACGCCATTATTTATGG CCTTTGCTTATTGGGCCGGGCTGAGGAGGCTCTGGGGGTTTTGAGGGGCATGCCTGAGATCGGGTTGTCCCCTGATGCTG TTAGTTATTGCACTGTTATATTAGGGTTTTGCCGAATCCGGGAGCCAGGGAAGGCGTATGAGTTGAAGGTGGAGGTAGAT GAAAATATGATCTCGTGGCTGGGGATCTGGGGGCTGTTTGAAGACACACGAAAATCACTTATGCAAGGCCTGTCGAATGA GGATACCTTTTCTAGTTTGATGAATGATTATTTAGCTCAAGGTAACTTGGAAAAGGCTTTTGACCTGAAATTTGAAATGT CACACTATGGTTATTTGCCAGAGTATGTTTACTATAGTATATTTGTGAATGGACTTAATAAGAAAGCTAGGACAAGGGAA GCTAAGGAACATCTTTTGTTTTTGATTTCTCATTGGCATTTGCTGTATTTTATAATATATGATTCTCTGATAGAGAACTG CAGTAATAATGAATTTAAGAGTGTGGTAGGGCTTGTCAAAGGTTTCGGAATGAGGGGTTTAGTGAATGAAGCCGCCAGAG CTCGTGTCACAATGTTTGAGGGGAATTATAAGCCAGATGGAGCCGTTTATAATTTATTAATATTTGAACATTCTAGATGT CGTAATGTTCATAAGGCGTATGATATGTACATGGAGATGGTGCATTATGGTTTTGCTCCTCATATGTTCTCTGTACGTGC TCTTATTTGGGCTCTATATCATGGTGGAAGGTACAATAAGATGATTTGGGTAATTCAAAACACATTGAGGAGCTGTAATC TCAATGATTCCGAGCTACTTAAAGTACTTAATGAAATTGACGTCAAGGAAGGTGAAACTGGGGCTCTTGAGGTTGTGCTA GCTGAAATAGCCATGGATGGGCTGTTACTTGATGGTGGAAAGTGTTCATATGCTTCAGCAAGAACCTAA
Protein sequence (LotjaGi2g1v0367400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCTLHKSMLLTRPNPMKLLRLSTCLRNRLSPPNVIIRGFTAVGNLQSESKKVGGAFELLKAGTEKGVESNSVSGRRIREA EQVVDETTTYNALVLAYCCDERVDEAMGILRCMTERGLKPNLISFNAVVQGLCGKGRMEEAEEVVEEMNQKDLAPDERTY TSLIHLFCDKGHPGKARKVLSEMIDSGFSPSVATYNRLIRRLRLEDAVGVFRGMTERDLSPDVVTYNTLISKFCKLKEPD LEKAFEMKAEMVHKGILPDADTYEPLIRTLCLQQRLSEAYDLFREMLRWGVSPNNETYTGLMNAYRIEGQFSKAFHLQDE MTHKGFLPGFVTGFSPSHVTYNAIIYGLCLLGRAEEALGVLRGMPEIGLSPDAVSYCTVILGFCRIREPGKAYELKVEVD ENMISWLGIWGLFEDTRKSLMQGLSNEDTFSSLMNDYLAQGNLEKAFDLKFEMSHYGYLPEYVYYSIFVNGLNKKARTRE AKEHLLFLISHWHLLYFIIYDSLIENCSNNEFKSVVGLVKGFGMRGLVNEAARARVTMFEGNYKPDGAVYNLLIFEHSRC RNVHKAYDMYMEMVHYGFAPHMFSVRALIWALYHGGRYNKMIWVIQNTLRSCNLNDSELLKVLNEIDVKEGETGALEVVL AEIAMDGLLLDGGKCSYASART
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 484 | 484 | - | – | |
| Gene3D | 71 | 168 | 98 | 1.5E-26 | ||
| PANTHER | 82 | 200 | 119 | 2.1E-91 | – | |
| PANTHER | 82 | 200 | 119 | 2.1E-91 | – | |
| SUPERFAMILY | 85 | 363 | 279 | 1.61E-5 | ||
| ProSiteProfiles | 86 | 120 | 35 | 11.444 | ||
| TIGRFAM | 89 | 121 | 33 | 7.5E-5 | ||
| Pfam | 89 | 118 | 30 | 1.2E-5 | ||
| Pfam | 120 | 168 | 49 | 1.4E-13 | ||
| ProSiteProfiles | 121 | 155 | 35 | 12.332 | ||
| TIGRFAM | 123 | 157 | 35 | 8.9E-7 | ||
| ProSiteProfiles | 156 | 190 | 35 | 12.671 | ||
| TIGRFAM | 159 | 192 | 34 | 6.8E-8 | ||
| Gene3D | 169 | 328 | 160 | 5.6E-41 | ||
| PANTHER | 175 | 239 | 65 | 2.1E-91 | – | |
| PANTHER | 175 | 239 | 65 | 2.1E-91 | – | |
| PANTHER | 206 | 332 | 127 | 2.1E-91 | – | |
| PANTHER | 206 | 332 | 127 | 2.1E-91 | – | |
| Pfam | 221 | 271 | 51 | 4.0E-13 | ||
| ProSiteProfiles | 222 | 258 | 37 | 11.619 | ||
| TIGRFAM | 224 | 260 | 37 | 7.3E-6 | ||
| ProSiteProfiles | 259 | 293 | 35 | 11.827 | ||
| TIGRFAM | 262 | 294 | 33 | 7.4E-7 | ||
| Pfam | 282 | 332 | 51 | 0.0025 | ||
| ProSiteProfiles | 294 | 328 | 35 | 10.435 | ||
| TIGRFAM | 297 | 328 | 32 | 9.1E-5 | ||
| Gene3D | 329 | 403 | 75 | 1.1E-14 | ||
| PANTHER | 333 | 396 | 64 | 2.1E-91 | – | |
| PANTHER | 333 | 396 | 64 | 2.1E-91 | – | |
| Pfam | 336 | 385 | 50 | 8.4E-11 | ||
| ProSiteProfiles | 337 | 371 | 35 | 11.531 | ||
| TIGRFAM | 339 | 373 | 35 | 2.9E-6 | ||
| ProSiteProfiles | 372 | 402 | 31 | 7.18 | ||
| Gene3D | 404 | 486 | 83 | 2.4E-7 | ||
| ProSiteProfiles | 426 | 460 | 35 | 9.668 | ||
| PANTHER | 428 | 528 | 101 | 2.1E-91 | – | |
| PANTHER | 428 | 528 | 101 | 2.1E-91 | – | |
| Pfam | 429 | 457 | 29 | 0.077 | ||
| Phobius | 485 | 504 | 20 | - | – | |
| PANTHER | 498 | 594 | 97 | 2.1E-91 | – | |
| PANTHER | 498 | 594 | 97 | 2.1E-91 | – | |
| Gene3D | 498 | 643 | 146 | 6.6E-12 | ||
| Phobius | 505 | 572 | 68 | - | – | |
| ProSiteProfiles | 511 | 545 | 35 | 5.799 | ||
| ProSiteProfiles | 546 | 580 | 35 | 9.854 | ||
| Pfam | 549 | 578 | 30 | 0.015 | ||
| TIGRFAM | 549 | 580 | 32 | 0.0014 | ||
| Phobius | 573 | 593 | 21 | - | – | |
| Phobius | 594 | 662 | 69 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0367400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…