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LotjaGi2g1v0382800.1

Overview

Field Value
Gene ID LotjaGi2g1v0382800
Transcript ID LotjaGi2g1v0382800.1
Lotus japonicus genome version Gifu v1.2
Description Histone H1; TAIR: AT2G18050.1 histone H1-3; Swiss-Prot: sp|P40267|H1_SOLPN Histone H1; TrEMBL-Plants: tr|I3S1P0|I3S1P0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0382800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:87920701..87922013) extracted from Lotus japonicus Gifu genome v1.2.

GTCAGTTGCGCCACGTGTACGTTCGTGATATTTCTTTGTACACGCTGGCAATCCGCACTCAACTCTCTCCACCAATAGAA AACAAGAATATTTCCAGCACACAGATTCTTCTCTCGTTATTTATAAGCGAAGCTTGCCGCGTTCAGTTATCACCAACTCA CTCACTCACTCACTCACTCACCGTTTTGTATAGCGACTCGTAAACTCAGTGATCGGAGATGACTGCCGCCGTGGAAAGTG TTACTCCCGCCGTCGAGAAGCCGGTGGAGGAGGTGAAAGCGCCGAAGGAAACCAAGCCTGCGAAGGAGAAGAAGCCGAAA GCCCCCAAAGAGAAGAAACCCAAACAGGGGAAAATCGCTTCACATCCTCCATATTTTCAGGTAATTGATTCAATCGATTT CATATAGCTTCTGTTTAATTCGTTGTTTCTCTGAATAATTCACGAGTATTGTGTAATTTTGCAGATGATCGAGGAGGCGT TGTTGGCTCTGAACGAGAAAGGCGGTTCTAGCCCTTACGCGATCGCGAAATACATGGAGGAGAAGCACAAGTCGGTGCTC CCTGCGAATTTCAAGAAGATTCTGGGTTTGCAGCTGAAGAATCAAGCCGCGAAGGGGAAACTCGTGAAGATCAAGGCTTC GTACAAGCTTTCTGGCGCGAAGAAGGATGGCGCCGGTGCTAAGGTGGCAAAGGCCAAGACAGAGAAGAAGGATGCTGCCG CCGCTAAGGTCGCACCGCGCCAGAAACGAACCAGGGCCGTGACAGCTGTGACCGCTGCCGCTCCGAAGAGCAAGAAGAGC GAGGCGGTGGTTAAGAAGGGTGGGATGAAGAAGAAGACGAGGAAGGTGTCTACGCTTGCGAAGCCGAAACAGCCAAAGTC CATTAGGTCTCCTTCAAAGAGGGCTAGGAAAGCTACTGCTGCGTGATGTTTGATGATGGATGGGGTTTCTGTTTGTGTAG GAAACTATGTGACATAGAAAATCTGTGAATACTGAAACTAGTATTGTACATGGTGTGATCGCTGTAATATGGGATCAGAT GGTGCTGACTGCTGAGTATTTCTGTTATGAATAGAATAATCCTTTTGCTATTATGTGTCCTCCTTCTTCTTCCTCTGCTA ATTGCTAGTTACTATTGTTTATGATGTGTGATTTCTTGTTCCCTTTGTTTACACGCTGGCTTCGCGACGATAGTTAACTC AAAAATTCAAGCCACAAAAATGTTTGAAAACTTGGAATCACTTGTGAAATGTGTTTGGCCGAATCAATTGAGGATTAATC TCTTTTTCTCTCACTATTTGCAATACCTTCATA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0382800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGCCGCCGTGGAAAGTGTTACTCCCGCCGTCGAGAAGCCGGTGGAGGAGGTGAAAGCGCCGAAGGAAACCAAGCC TGCGAAGGAGAAGAAGCCGAAAGCCCCCAAAGAGAAGAAACCCAAACAGGGGAAAATCGCTTCACATCCTCCATATTTTC AGATGATCGAGGAGGCGTTGTTGGCTCTGAACGAGAAAGGCGGTTCTAGCCCTTACGCGATCGCGAAATACATGGAGGAG AAGCACAAGTCGGTGCTCCCTGCGAATTTCAAGAAGATTCTGGGTTTGCAGCTGAAGAATCAAGCCGCGAAGGGGAAACT CGTGAAGATCAAGGCTTCGTACAAGCTTTCTGGCGCGAAGAAGGATGGCGCCGGTGCTAAGGTGGCAAAGGCCAAGACAG AGAAGAAGGATGCTGCCGCCGCTAAGGTCGCACCGCGCCAGAAACGAACCAGGGCCGTGACAGCTGTGACCGCTGCCGCT CCGAAGAGCAAGAAGAGCGAGGCGGTGGTTAAGAAGGGTGGGATGAAGAAGAAGACGAGGAAGGTGTCTACGCTTGCGAA GCCGAAACAGCCAAAGTCCATTAGGTCTCCTTCAAAGAGGGCTAGGAAAGCTACTGCTGCGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0382800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTAAVESVTPAVEKPVEEVKAPKETKPAKEKKPKAPKEKKPKQGKIASHPPYFQMIEEALLALNEKGGSSPYAIAKYMEE KHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLSGAKKDGAGAKVAKAKTEKKDAAAAKVAPRQKRTRAVTAVTAAA PKSKKSEAVVKKGGMKKKTRKVSTLAKPKQPKSIRSPSKRARKATAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 49 49 - –
PANTHER
PTHR11467:SF50
6 204 199 2.0E-54 –
PANTHER
PTHR11467
6 204 199 2.0E-54 –
MobiDBLite
mobidb-lite
16 34 19 - –
PRINTS
PR00624
35 56 22 1.5E-7
IPR005819
Gene3D
G3DSA:1.10.10.10
43 141 99 2.2E-15
IPR036388
SMART
SM00526
46 113 68 2.9E-27
IPR005818
CDD
cd00073
47 127 81 6.16265E-18
IPR005818
SUPERFAMILY
SSF46785
47 128 82 1.69E-20
IPR036390
ProSiteProfiles
PS51504
48 118 71 28.91
IPR005818
Pfam
PF00538
49 116 68 5.3E-16
IPR005818
PRINTS
PR00624
62 79 18 1.5E-7
IPR005819
PRINTS
PR00624
136 150 15 1.5E-7
IPR005819
MobiDBLite
mobidb-lite
137 207 71 - –
PRINTS
PR00624
186 205 20 1.5E-7
IPR005819
MobiDBLite
mobidb-lite
193 207 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006334
Biological process Nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Subterm of
Part of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0382800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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