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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0384100 |
| Transcript ID | LotjaGi2g1v0384100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain protein; TAIR: AT2G18090.1 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; Swiss-Prot: sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr|A0A1J7IDW5|A0A1J7IDW5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0384100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88041105..88046157) extracted from Lotus japonicus Gifu genome v1.2.
ATAATATTGTACGTTGGAAAAGGTGAAAGCGATTAGAGGGAGCCCAAAATGAATGAATTGACTTAAAAAGAGAAAGAGAA AATGGAAAGAAAGAAACAAAGAAGAATTGGCTTGTTACATCTGCACCCAGTCGTCGATTCCGTGTGGCCACTCACCACCA CCTCATCATCAATGACCGACCGCGTCCCCAATTACTAGGGTTTCTTTCTTTCTCTCTCACGCTACTCCTCATGTTCCTCC TCAATTCCTGATTCTCTCTTCCTTCCGATTCTCCCATCATGGAAGCCGCAACACTCCCTCCCGCCGCCGCTCCCGTTTTG AAGAGGAAGCGCGGTCGCCCGGCGAGAGCAGTTCCGAAAACTACTTCTGCTGCTCCTCCTCCTCCTCCACGGAGCCAGAA AAGAGATGAGGAAGATGTCTGCTTCATCTGCTTCGACGGTGGATCCCTCGTTCTCTGCGATCGACGGTAACTTCATAATT GACTTCAACTTTGTTAATTCAGTTCCACTTCACTTCACAGCAATTGGAGCTACTCGTGTGGTTTTTCAGTTTCAGTTGAT TTGAGTAATCATTTCTCTTTCTCTTCCCTTGAATTTTCCCTTTACAGGGGTTGCCCTAAAGCATATCATCCCTCCTGTGT TAAGCGAGATGAGGCGTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTATGTTTCTTCATTCTTTAACTGTATGCATAG CGATTGATTTCTACAGATAAAGGACTGATCTATGAAAACTGAAACGGTTCATTAGATATGTTTTGTCGCTTTGTTGAAAT CTAATTGCTTATGGATGAGATTTGAATTGGAAGTTTTTGGAATTGGAACATTAATACAAAATCTGGTTGATTAACTGATG GCATTATTGTATCAAGGGTGCATTAATTTGAAGGGGAATGATGCATGTGCCGGTGGCGTGCGACATTGTTTCCGCGGAAC ACTTGCATAAATTGTGTTTTAGTATTTTATAGTGGTGTATAGATTTTCTTATGCATGTGTGGCTTGTAGCTTTTGCCTAA ACCACCATACCCACTACTGCATATTTTTCTAATGCTGCTATGCATCACCATTGTTAATAGCACGCTATAACTGTGAACTG GTCTTTGCATGTGCGACACTTCCATGGCCTTGCATTTTTCAATAGTGGCAGTTGCAGGATTGGCTTCTAATGGGGCCACT ATTGTAGAAAATCATGGCCAATGCGGCCGCTATTCTCCCCAAGTGCGAAAAACCATATTTACTCTCCATGTTGCTTGAGT TGTTGGACCCATTTTTTGTTGGTTATTCCTGATTTTCCCTCCTATCTGATTGTAGGTAGATAATCTTTCAGTATTAGTTA TGTTAGTCTTTAATTTTGGGTAATTTCATGTTTTCTTCACATTTATACGTGTGTAGTGTAAATTATTTATCTTGGATATA CAATTCAGTATAGCAGTCATCCTGCTAATGCTATTGCATTTTTGGGGTTGGCCTCTCCACATTGCAGTCTGGGGGTGATA ACTATGCTGCTATTCATTTATTATATCTTTTAGTAGATTCTCCCATTTACTACATGTGCCAGGTAGTGCACACTTGCTCC TTATTTTGGAGAATCCAATAATTTAGGATTTAACATTTTAGCATGTATTAACGGCATGTCTTTCCATTATTAAAAGTTCA TTTTTGCGCTTCTTAGGTTGGCATCTATGTACCAAATGTGCGAAGACATCCCATTATATGTGCTATACATGTCCCTATTC TTTGTGCAAAAGATGTACAAAAGGTGCTGATTTTGTCAGTGTCAGAGAAAACAAAGGTTTCTGTGGAATATGCATGAAAA CTATAATGCTGATTCAGAACAGTGCCCAGGGAAATGAGAAGGTACATTTAACTTTATTATATATTTGTGTACAGGAATAC TATATTCCCCTCCCAGCCTCCCTCCCACTCTCTTCTGTTGTGCTAGTACAGAAAGTGCTAGGGGGCATAGTGTTGGTTAC TTGATGTTTGGGTTAAAGATACACGAAAGCATGATGGCTTAATTTTGATCTCTTTCTTTTCTTACTTTGTCAGTGTGAAG TGGATTTTGATGACAAAAGCAGTTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGAGAAGCTATCTTTAACT TGTGATGAGCTCCTTCGAGCTAAAAACCCGTGGAAAGGTGCTGCTTCTATGAAGTGCAAGGTTCAAACTCCCCAGGAACT TTATCATCCTAAAGTTGAACAAGGTTCTGGTTCTGAGATCTCTTATGTAGATATAGAACCAAATAAATTGAATAACACGA AGTCTAACACAAGTGATAAACATCATATTTTGGATGGTGTCTTGAATGATGTTGGATGCTCTACACAAGACTTGCCCATG ACCTGTGAGCCAACTGGGAATACGTGTATAATAAAGAACCAAATCAACACTAATGAAGCAGCAGTTGATGATAACACTGG TGAAGGAGTTGTTAGATTAGAAGCCTCTAGTCAGTCTAGTGTTCCAGTAAACATTTCATCATTACTTCTCTCCACCGGGA TGGAGCAGCCAACTGGTGATTTTTTGAATGATATATCATGGCATTATCAGGATCCAACTGGGAAGGTTCAAGGACCCTTT TCTATCTTTCAGCTGTCTAAGTGGAATGAAAGTGGACATTTCCCTCCAGATCTCAGAATATGGAGGACAGATCAGAAACA AGAAAACTCTATATTATTGAATGATGCACTAATTGGGAAATGTTCCCAAAATGTGTCATTGCCATACAACAGCCAACAAC TGTCTTTGGAGTCCTGTGTTACCCTGGATAAGAAAGAAAATAGTCAGGATGGTGTGAACAATTCAACAAGGAATGAAATT TGTGCAAACAGCCAAATTGTGGAGCAGAGCCTGGAGCAGAAGGTGGATGGTACTTGTACCCAGTCTAACAGTAAAGATGA ATCTATTAGGATTGATGAACAGAAGGTGGATGGTTCTTGTACGCAGTCTAACGGTAAAGATGAATCTTTTAGGATCGATG AGCGGCACTCTTCATCTCGTTGTGCGATACCAGCAGACGGGAATAACAATGTGAGTCAAAGTGGAAATATTGAAAAGATG GAGCTGTCCAAATGTGAAATTCCTTGTCATAATGGTCCCCATGTATACCCTACACTACCTTCAACTACCTTTTCTGTTAA ATTTAATGAGGATCATTTTAATAAATTAAGCGAAGGTCATGGAAATGAGGGAAACTCTGAAGATAATGGAAATTATGGCT CGAACAGGATTTCCGAGGGTCAGAGTCCTAGTGGGCAAAGTTATCAGAAACAATCAGACAGTGAAGAGAATTCAGGGCAA TCTACTAGTCAGAACTGGAATAATCCTCCTATAGTTCTACCAACACCTTGTAATCCAAATTCATGGATGGCAGCACTATT TGGTGAAACAACTGATTTTAGCTCATTAGTTGATGAATCAGTTTCAGACCTATTGGCAGAAGTGGAGGCAATGGAGTCAC TTGGTGCTGGATTAGAATCCCCCACTTCAATTATGAAATGTGGTGAGGAGTTGACTGACGGTTCTATAACTGAATGTCTC AGTTTTGCAAATGGGTTTAGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACAGCTGATTTAAACCTACC ATATCATTCCAATGCAGCAGAGGAACCATTTCAGCAAGCAGGTTTACAGCAATATCATCATCATCAAAAAGTCTCTGGGG AGCATCCCTCAAGAAGTTCTGAAGTTGAGGTGTGTACAAAGAATACTAGTGTTATGTAATCAATGGGATTAAGGCTCAGA AAACCACCCCATTAGTGAATTTAAAATTTTAGTTTAATAGTTTTACATTTAATATGCAGAGAGTAGAATCTAATCCATTA ATCTTGTGCAGTCTACATTTTCAAGGATTAGCTGGAATCCATCCAATCAATTTTCCTGGGATCCAAATTGTAAGTTGTTT CTCAACTCTTTGCTTCTCATAACAATTTTCGCTAGGTGCTGTCTAGTGTAATTAGTGCTAGCATTCACAATTCCTTGAAT TTGGATGTTTTGCTAAAATGAGTCCTTAAATTTGCAGGTTGACCGTGACAGATTAAGTCGAAGGCCGGTTTTCTTATATT TAGGCTACACTGATCTTAGACCAACTTGAATTGGATAAGTATTATCCTGTTTATAACCAGCATTCTTTGCAAATTATAAT AACCTCTCTCACGTTTGTTTGTTGATGAAGAAAAGGAGCGTTGGGGTTCTTGGTAGTCATGTTTATTTTGTTAGGTAACT TCATTGAATATTAAATATGAAGAACTTGCTAGATTTCTCTATCGAACGGGACCCTTTTTCTTCCATTTCAGGAACTAATA ATGAACAGCGTATATATTTTTGGTCAAAATCCTTGGATTGAATTGACACAACATATTAATGTGATACTATTCAGCCTTTC GTGAACAACTGATATTATTAAACTGAACTTATGTATTCCGATCTTTCAACATATTAGGGAAATGTAACATCTGCCAACAT ATGCCCTTTAGCTAGTAGAGAGAACAAACTTTGAATCTGGGTTGGATTCTAAATTACAATATTGGTATTGGAATTATTTC AACCCAATTAGGATTTAGATCATTTTTAGTATTCATCCTTTAAGATTATAAATAGGCACTCTATTGTTTTCCTTAGGCTA CCATATTATGAAATATATTTTTACTTTCATTAGTGATTAACAATGGTTTGAGCATCGTGTGACGAGTAGATTAGGAGGTA AAAGAAGCAACTACCTCTCAACATAGTCTAACAACTAACTTATTAATTCAGGATCTATACAATTTGTTCGTAAAATAATG ACATTACACTCGATTGCAAAAATAAACACATGTTAAAACTTCCAGGTATCATGTAATTTGCCTTAATTAACAGGTACTAA CATTAATGTAAACCATATCATGTTTATTTTTAGTACTTTTTATCTTAGTTTATAAATGATATTACATAATAGTGAATCCT TGTAGATATGTGC
CDS sequence (LotjaGi2g1v0384100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCGCAACACTCCCTCCCGCCGCCGCTCCCGTTTTGAAGAGGAAGCGCGGTCGCCCGGCGAGAGCAGTTCCGAA AACTACTTCTGCTGCTCCTCCTCCTCCTCCACGGAGCCAGAAAAGAGATGAGGAAGATGTCTGCTTCATCTGCTTCGACG GTGGATCCCTCGTTCTCTGCGATCGACGGGGTTGCCCTAAAGCATATCATCCCTCCTGTGTTAAGCGAGATGAGGCGTTC TTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATCTATGTACCAAATGTGCGAAGACATCCCATTATATGTGCTATAC ATGTCCCTATTCTTTGTGCAAAAGATGTACAAAAGGTGCTGATTTTGTCAGTGTCAGAGAAAACAAAGGTTTCTGTGGAA TATGCATGAAAACTATAATGCTGATTCAGAACAGTGCCCAGGGAAATGAGAAGTGTGAAGTGGATTTTGATGACAAAAGC AGTTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGAGAAGCTATCTTTAACTTGTGATGAGCTCCTTCGAGC TAAAAACCCGTGGAAAGGTGCTGCTTCTATGAAGTGCAAGGTTCAAACTCCCCAGGAACTTTATCATCCTAAAGTTGAAC AAGGTTCTGGTTCTGAGATCTCTTATGTAGATATAGAACCAAATAAATTGAATAACACGAAGTCTAACACAAGTGATAAA CATCATATTTTGGATGGTGTCTTGAATGATGTTGGATGCTCTACACAAGACTTGCCCATGACCTGTGAGCCAACTGGGAA TACGTGTATAATAAAGAACCAAATCAACACTAATGAAGCAGCAGTTGATGATAACACTGGTGAAGGAGTTGTTAGATTAG AAGCCTCTAGTCAGTCTAGTGTTCCAGTAAACATTTCATCATTACTTCTCTCCACCGGGATGGAGCAGCCAACTGGTGAT TTTTTGAATGATATATCATGGCATTATCAGGATCCAACTGGGAAGGTTCAAGGACCCTTTTCTATCTTTCAGCTGTCTAA GTGGAATGAAAGTGGACATTTCCCTCCAGATCTCAGAATATGGAGGACAGATCAGAAACAAGAAAACTCTATATTATTGA ATGATGCACTAATTGGGAAATGTTCCCAAAATGTGTCATTGCCATACAACAGCCAACAACTGTCTTTGGAGTCCTGTGTT ACCCTGGATAAGAAAGAAAATAGTCAGGATGGTGTGAACAATTCAACAAGGAATGAAATTTGTGCAAACAGCCAAATTGT GGAGCAGAGCCTGGAGCAGAAGGTGGATGGTACTTGTACCCAGTCTAACAGTAAAGATGAATCTATTAGGATTGATGAAC AGAAGGTGGATGGTTCTTGTACGCAGTCTAACGGTAAAGATGAATCTTTTAGGATCGATGAGCGGCACTCTTCATCTCGT TGTGCGATACCAGCAGACGGGAATAACAATGTGAGTCAAAGTGGAAATATTGAAAAGATGGAGCTGTCCAAATGTGAAAT TCCTTGTCATAATGGTCCCCATGTATACCCTACACTACCTTCAACTACCTTTTCTGTTAAATTTAATGAGGATCATTTTA ATAAATTAAGCGAAGGTCATGGAAATGAGGGAAACTCTGAAGATAATGGAAATTATGGCTCGAACAGGATTTCCGAGGGT CAGAGTCCTAGTGGGCAAAGTTATCAGAAACAATCAGACAGTGAAGAGAATTCAGGGCAATCTACTAGTCAGAACTGGAA TAATCCTCCTATAGTTCTACCAACACCTTGTAATCCAAATTCATGGATGGCAGCACTATTTGGTGAAACAACTGATTTTA GCTCATTAGTTGATGAATCAGTTTCAGACCTATTGGCAGAAGTGGAGGCAATGGAGTCACTTGGTGCTGGATTAGAATCC CCCACTTCAATTATGAAATGTGGTGAGGAGTTGACTGACGGTTCTATAACTGAATGTCTCAGTTTTGCAAATGGGTTTAG CCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACAGCTGATTTAAACCTACCATATCATTCCAATGCAGCAG AGGAACCATTTCAGCAAGCAGGTTTACAGCAATATCATCATCATCAAAAAGTCTCTGGGGAGCATCCCTCAAGAAGTTCT GAAGTTGAGTCTACATTTTCAAGGATTAGCTGGAATCCATCCAATCAATTTTCCTGGGATCCAAATTGTTGA
Protein sequence (LotjaGi2g1v0384100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAATLPPAAAPVLKRKRGRPARAVPKTTSAAPPPPPRSQKRDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCVKRDEAF FRSKAKWNCGWHLCTKCAKTSHYMCYTCPYSLCKRCTKGADFVSVRENKGFCGICMKTIMLIQNSAQGNEKCEVDFDDKS SWEYLFKVYWMYLKEKLSLTCDELLRAKNPWKGAASMKCKVQTPQELYHPKVEQGSGSEISYVDIEPNKLNNTKSNTSDK HHILDGVLNDVGCSTQDLPMTCEPTGNTCIIKNQINTNEAAVDDNTGEGVVRLEASSQSSVPVNISSLLLSTGMEQPTGD FLNDISWHYQDPTGKVQGPFSIFQLSKWNESGHFPPDLRIWRTDQKQENSILLNDALIGKCSQNVSLPYNSQQLSLESCV TLDKKENSQDGVNNSTRNEICANSQIVEQSLEQKVDGTCTQSNSKDESIRIDEQKVDGSCTQSNGKDESFRIDERHSSSR CAIPADGNNNVSQSGNIEKMELSKCEIPCHNGPHVYPTLPSTTFSVKFNEDHFNKLSEGHGNEGNSEDNGNYGSNRISEG QSPSGQSYQKQSDSEENSGQSTSQNWNNPPIVLPTPCNPNSWMAALFGETTDFSSLVDESVSDLLAEVEAMESLGAGLES PTSIMKCGEELTDGSITECLSFANGFSPMLDAGKGDALSSTADLNLPYHSNAAEEPFQQAGLQQYHHHQKVSGEHPSRSS EVESTFSRISWNPSNQFSWDPNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 42 | 42 | - | – | |
| PANTHER | 13 | 591 | 579 | 1.8E-220 | – | |
| PANTHER | 13 | 591 | 579 | 1.8E-220 | – | |
| SUPERFAMILY | 33 | 92 | 60 | 1.24E-8 | ||
| Gene3D | 36 | 140 | 105 | 2.9E-25 | ||
| ProSiteProfiles | 45 | 111 | 67 | 8.556 | ||
| SMART | 47 | 93 | 47 | 1.3E-7 | ||
| CDD | 47 | 92 | 46 | 4.39769E-19 | – | |
| ProSitePatterns | 48 | 108 | 61 | - | ||
| SUPERFAMILY | 322 | 377 | 56 | 1.44E-17 | ||
| CDD | 324 | 379 | 56 | 2.97913E-19 | ||
| ProSiteProfiles | 324 | 378 | 55 | 15.061 | ||
| SMART | 325 | 380 | 56 | 9.8E-19 | ||
| Gene3D | 325 | 383 | 59 | 3.6E-26 | ||
| Pfam | 327 | 366 | 40 | 2.1E-13 | ||
| MobiDBLite | 438 | 494 | 57 | - | – | |
| MobiDBLite | 535 | 594 | 60 | - | – | |
| MobiDBLite | 543 | 591 | 49 | - | – | |
| PANTHER | 597 | 727 | 131 | 1.8E-220 | – | |
| PANTHER | 597 | 727 | 131 | 1.8E-220 | – | |
| MobiDBLite | 704 | 727 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0384100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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