Domain Predictions — View

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cd15568

Source: CDD

Description

PHD5_NSD

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0127099.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] gi\|356495372\|ref\|XP_003516552.1\|	Domains Coil G3DSA:1.10.245.10 G3DSA:3.30.40.10 IPR001965 IPR003121 IPR004343 IPR011011 IPR013083 IPR019786 IPR019787 IPR019835 PF02201 PF03126 PS01359 PS50016 PS51360 PTHR22884 PTHR22884:SF339 SM00151 SM00249 SM00719 SSF159042 SSF47592 SSF57903 cd15568 mobidb-lite	26
Lj0g3v0127099.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi\|502161282\|ref\|XP_004512106.1\|	Domains Coil G3DSA:1.10.245.10 G3DSA:3.30.1490.40 G3DSA:3.30.40.10 IPR000571 IPR001965 IPR003121 IPR003169 IPR004343 IPR011011 IPR013083 IPR019786 IPR019787 IPR019835 PF02201 PF02213 PF03126 PS01359 PS50016 PS50103 PS50829 PS51360 PTHR22884 PTHR22884:SF339 SM00151 SM00249 SM00444 SM00719 SSF159042 SSF47592 SSF55277 SSF57903 SSF90229 cd00072 cd15568 mobidb-lite	36
Lj0g3v0335379.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 [Cicer arietinum] gi\|502161278\|ref\|XP_004512104.1\|	Domains G3DSA:3.30.1490.40 G3DSA:3.30.40.10 IPR001965 IPR003169 IPR011011 IPR013083 IPR019786 IPR019787 PF02213 PS01359 PS50016 PS50829 PTHR22884 PTHR22884:SF339 SM00249 SM00444 SSF55277 SSF57903 cd00072 cd15568 mobidb-lite	21
Lj1g3v3357590.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi\|357467443\|ref\|XP_003604006.1\|	Domains Coil G3DSA:1.10.245.10 G3DSA:3.30.1490.40 G3DSA:3.30.40.10 IPR000571 IPR001965 IPR003121 IPR003169 IPR004343 IPR011011 IPR013083 IPR019786 IPR019787 IPR019835 PF02201 PF02213 PF03126 PS01359 PS50016 PS50103 PS50829 PS51360 PTHR22884 PTHR22884:SF374 SM00151 SM00249 SM00444 SM00719 SSF159042 SSF47592 SSF55277 SSF57903 cd00072 cd15568 mobidb-lite	35
Lj1g3v3357590.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi\|357467443\|ref\|XP_003604006.1\|	Domains G3DSA:1.10.245.10 G3DSA:3.30.1490.40 G3DSA:3.30.40.10 IPR000571 IPR001965 IPR003121 IPR003169 IPR004343 IPR011011 IPR013083 IPR019786 IPR019787 IPR019835 PF02201 PF02213 PF03126 PS01359 PS50016 PS50103 PS50829 PS51360 PTHR22884 PTHR22884:SF374 SM00151 SM00249 SM00444 SM00719 SSF159042 SSF47592 SSF55277 SSF57903 cd00072 cd15568 mobidb-lite	34
Lj6g3v0365860.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: zinc finger CCCH domain-containing protein 44-like [Fragaria vesca subsp]. vesca] gi\|470138342\|ref\|XP_004304916.1\|	Domains Coil IPR004343 IPR011011 PF03126 PS51360 PTHR14445 PTHR14445:SF39 SM00719 SSF159042 SSF57903 cd15568	11
Lj6g3v0365860.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain-containing protein [Medicago truncatula] gi\|357460663\|ref\|XP_003600613.1\|	Domains Coil G3DSA:1.10.245.10 G3DSA:3.30.40.10 IPR001965 IPR003121 IPR004343 IPR011011 IPR013083 PF02201 PF03126 PS51360 PTHR14445 PTHR14445:SF39 SM00249 SM00719 SSF159042 SSF47592 SSF57903 cd15568 mobidb-lite	20
LotjaGi1g1v0563100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain protein; TAIR: AT2G16485.2 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp\|Q9SIV5\|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr\|A0A0B2RGJ5\|A0A0B2RGJ5_GLYSO Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100	Domains Coil G3DSA:1.10.245.10 G3DSA:2.170.260.30 G3DSA:3.30.1490.40 G3DSA:3.30.40.10 IPR000571 IPR001965 IPR003121 IPR003169 IPR004343 IPR011011 IPR013083 IPR019786 IPR019787 IPR019835 IPR035445 IPR036128 IPR036885 PF02201 PF02213 PF03126 PS01359 PS50016 PS50103 PS50829 PS51360 PTHR46695 PTHR46695:SF5 SM00151 SM00249 SM00444 SM00719 SSF159042 SSF47592 SSF55277 SSF57903 cd00072 cd10567 cd15568 mobidb-lite	40
LotjaGi1g1v0784500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain protein; TAIR: AT5G08430.2 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp\|Q9FT92\|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr\|K7KGZ1\|K7KGZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0784500	Domains Coil G3DSA:1.10.245.10 G3DSA:2.170.260.30 G3DSA:3.30.40.10 IPR001965 IPR003121 IPR004343 IPR011011 IPR013083 IPR019786 IPR019787 IPR036128 IPR036885 PF02201 PF03126 PS01359 PS50016 PS51360 PTHR46851 PTHR46851:SF5 SM00249 SM00719 SSF159042 SSF47592 SSF57903 cd10567 cd15568 mobidb-lite	28
LotjaGi2g1v0384000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain protein; TAIR: AT3G51120.1 zinc finger CCCH domain-containing protein 44; Swiss-Prot: sp\|Q9SD34\|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr\|G7KGD4\|G7KGD4_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0384000	Domains Coil G3DSA:1.10.245.10 G3DSA:2.170.260.30 G3DSA:3.30.1490.40 G3DSA:3.30.40.10 IPR000571 IPR001965 IPR003121 IPR003169 IPR004343 IPR011011 IPR013083 IPR019786 IPR019787 IPR019835 IPR035445 IPR036128 IPR036855 IPR036885 PF02201 PF02213 PF03126 PS01359 PS50016 PS50103 PS50829 PS51360 PTHR46695 SM00151 SM00249 SM00444 SM00719 SSF159042 SSF47592 SSF55277 SSF57903 SSF90229 cd00072 cd10567 cd15568 mobidb-lite	41
LotjaGi2g1v0384100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain protein; TAIR: AT2G18090.1 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; Swiss-Prot: sp\|Q9SD34\|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr\|A0A1J7IDW5\|A0A1J7IDW5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0384100	Domains G3DSA:3.30.1490.40 G3DSA:3.30.40.10 IPR001965 IPR003169 IPR011011 IPR013083 IPR019786 IPR019787 IPR035445 PF02213 PS01359 PS50016 PS50829 PTHR46695 PTHR46695:SF4 SM00249 SM00444 SSF55277 SSF57903 cd00072 cd15568 mobidb-lite	22
LotjaGi6g1v0050200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain protein; TAIR: AT5G63700.1 zinc ion binding / DNA binding protein; Swiss-Prot: sp\|Q9FT92\|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr\|K7LRF3\|K7LRF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050200	Domains G3DSA:1.10.245.10 G3DSA:2.170.260.30 G3DSA:3.30.1490.40 G3DSA:3.30.40.10 IPR001965 IPR003121 IPR003169 IPR004343 IPR011011 IPR013083 IPR035445 IPR036128 IPR036885 PF02201 PF03126 PS50829 PS51360 PTHR46851 PTHR46851:SF2 SM00249 SM00719 SSF159042 SSF47592 SSF55277 SSF57903 cd10567 cd15568 mobidb-lite	28
LotjaGi6g1v0050300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp\|Q9FT92\|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr\|A0A151UA03\|A0A151UA03_CAJCA Uncharacterized protein At5g08430; Found in the gene: LotjaGi6g1v0050300_LC	Domains G3DSA:2.170.260.30 G3DSA:3.30.40.10 IPR004343 IPR011011 IPR013083 IPR036128 PF03126 PS51360 PTHR46851 PTHR46851:SF2 SM00719 SSF159042 SSF57903 cd15568	14
LotjaGi6g1v0050300_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp\|Q9FT92\|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr\|A0A151UA03\|A0A151UA03_CAJCA Uncharacterized protein At5g08430; Found in the gene: LotjaGi6g1v0050300_LC	Domains Coil G3DSA:2.170.260.30 G3DSA:3.30.40.10 IPR004343 IPR011011 IPR013083 IPR036128 PF03126 PS51360 PTHR46851 PTHR46851:SF2 SM00719 SSF159042 SSF57903 cd15568	15
LotjaGi6g1v0050400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCCH domain protein; TAIR: AT5G63700.1 zinc ion binding / DNA binding protein; Swiss-Prot: sp\|Q9FT92\|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr\|K7LRE8\|K7LRE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050400	Domains Coil G3DSA:1.10.245.10 G3DSA:2.170.260.30 G3DSA:3.30.40.10 IPR001965 IPR003121 IPR004343 IPR011011 IPR013083 IPR036128 IPR036885 PF02201 PF03126 PS51360 PTHR46851 PTHR46851:SF2 SM00249 SM00719 SSF159042 SSF47592 SSF57903 cd10567 cd15568 mobidb-lite	24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.67