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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0387000 |
| Transcript ID | LotjaGi2g1v0387000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G17760.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FN75|AATPI_ARATH AAA-ATPase At5g17760; TrEMBL-Plants: tr|I1J8R7|I1J8R7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0387000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88294022..88297831) extracted from Lotus japonicus Gifu genome v1.2.
TAATATTAGAGATATGACTGGTCATGTCACCATTTGCTTAATTTAAAAAAAAAAAATCAGAACCACTTTTGTCTAACAAA AGCTATTTTCTCAGTCGCTTATTCAGAAGTACTCAAAACACACATTGGAATTCCACATAAATACCAACAGATGTGATTAT AGGCATTAATCTTGGGAAACCATTAGCCAGCCAACTCTTACTCAACTCACTCCGGCCACCATGTTTTCTCCAAGAGAAAT GCCTTCCCCTTCCTCCATCTTCTCCGCCTACGCCTCCATGACCGCCTCCATCATGCTCGTCCGTTCCATGGCCAACGACC TCATCCCTCAACCAATCCGCGGCTACCTCACCAACGCCATCCGCCGCCTCATCATCAAGCCTCGCTCCCCTACTCTCACC CTCATCATCGAAGAATCCTCCGGCATCGCCCGCAACCAAGTCTACGACGCCGCAGAAGCTTACCTCTCCACCAGGGTCCG CCCTGAAAACGAACGCCTCAAAATCAGCAAGACCCCAAAGGAGAAGAAGCTCACCATCCGCCTAGAGAAAGATGAGAAGG TTGAAGATATCTACAACGGTGCTTCTCTTATCTGGAAATTCATCTGCGCAGAGACAGAGAAAAACAGCACCTTGAGCAAC AACCACGACATTCACAACAACAGTGTTTCCTTGAGATCGGAAAAACGCTATTTCGAGCTGAGTTTTCTCAAGGAGCATAA GGAGATGGTGCTGGAGTGTTACCTTCCCTTCATTCTTGACAGAGCTAAAGAGATGAAGGATGAGGACCGCGTGTTGAAGA TCCATACACTGAACGCTTCTTACTGTTACAATGTAATCAAGTGGGACTCCATAAACCTTGAACACCCGTCAACTTTTGAG ACTTTGGCGATGGAGCCGGAGGCGAAGAAGGCGGTGATGGAGGACCTGAACAGGTTTGTGAAGAGAAAGGAGTTTTACAA GAAGGTGGGGAGGGCGTGGAAGCGCGGTTACTTGCTATATGGGCCTCCGGGAACTGGGAAATCGAGCTTGATTGCAGCAA TGGCGAACTATTTGAAGTTTGATATCTTTGACCTGCAGCTTGGGAATATAGTGAGGGATTCGGATCTAAGGAAGTTGCTT CTAGCTACCGCGAATAGATCCATTTTGGTGATTGAGGATATTGATTGCAGCGTGGATCTGACGGAACGTCGCAATGGAGG AGATGGACAAACTGATGTACAGGTTGGTCCCTAGCTTGCTAATTCTAACTAACTTCTATACTTAACCCCCGTTTAGAAAA GCATATTTGAGCTTATCTGATAGCATAAACTCTTATGTCAGTGTTTGAGAGAGCTTATGCAGACAGCTTATGACCTGCCA TAAGCTGTTTTGAGGTTATTTTCATAAGTTATTCAGGATAGCTTATGAAAAAAGTTTATGCTTATATATAGCTTATTTTC GATTTATTTCAATAAAAAATTTAAAATAGCTTATGAATAAGCGCTTATAATCATAAGCGCTTAATTAAGTTGTGTTTCCA AACGGAGCTTTAGTGTACCTTCACCTTTTATTTATTTAGCTCTAATTAAAAATATAATATGATTTAACAAATAAACAAGA ATATTTTTTGCAGGAGACAGAACAAATATAGGTGAGGGTGAAACAAAATGAATTCAGAAACAGTTATTAGTATTACTGTG TTTAGTTTAGCTTTTTAATTTACTGATTAGTGAATACTGAAGTTGAATTAAAAATCCTTTAAATAGCATATCATGTCATC ATCCACCAATAGGCCTAAAAAAACCACTTCCAAAGTTCCAAAAAAACATATCACTATCGATTAGGGGTGTTCGTGGATTG GATTGGATCGGATTTAAGGAGAAAAATCATCTGATCCGATCTCATCAGTTTAATGATTTTGTCATCCAATGGATTTTTTA CTAAATTCAAATCCGAACCAATCCGATCCAATCTATAGCGGTTTGGATTGGATTGGATTATTCGATTTTTGTTTAACTTT TTTATACTTTGAAATTGTGTTGTATAAATTTTAAAAATATATAATATATGATAAATACAACGATACATAATTTATAAAAT TAATATAACATTCATAAACTATAACATAGTAACATATTTTTAAATTATGATTATAATTGTTTACATTGATGCATGTATAT AGTTCAAATAATTATTTAAACTTTTTTTTATTAAAACGTAATTTTATAAATAAGCATGTGTGATATAATCAATAAATATG TATTATGTAAGTGTAAATGGAATGATATATGTATAACTAAAAGTATACATATTTGTGAATGTTCGGTTTTGGATTGGATT GGTTCGGTTTTGGAAATCAAATCCGAAATCCGATCCGATCCAATAAATAATTTTGGTTTTTTCAATTTTCAGTCCGTTCG GTTTTGTCTTAATTGGATTTCGATTTTTTTAAATCAGTTTGTCAATTTTATTTGAATTGGTTCGGTTATGAACAACCCTA CTATCGATCCCGCATTTTGTTCAGACATTTCATTGTTCTCTACTTCTTCTCTGGTGCTTTCAGTTTGATATATGGCGAGA GGATAAGGACTGAGTACCTTTTCTTCAAAGGTCATTGTTAAATGTTATTGGATGCCACATAGGGCAGTCCACCTGTAAAG TTTCTACTGTGGTGCTGTCATTTCATTCTCTACCAATGTGTGTAGGTGTTTTTAATATTGCTAAAAAAATTGTTATAAAG GGCATACTGCATAGTGAATTTAACTTTTAGGTTAGAGTTAGATTTATCTTATGTTTATTTGGGAGTATTTGGACAATTCC TTATAATATTGTTGACTTGACTTTGAACATATCTGAACTCATTAGTATTTTCCTTCTAATTATATGCAATTTAATTTAAT AATTTTGCACTTGAAAATACAAACTCTCTCATTTACTAGTTTGGTCTTGTTCTTACCATAACTCTATCTATCATCCACAT ATCATGAATCGATTAAGCCAGAATGCTAAAATTGGTCATAGGCTCATCGTGAATCTGATGGATGGATGCAGCTGACTCTG TCCGGATTACTGAACTTCATAGATGGGCTCTGGTCAAGCTGCGGAGACGAGAGAATCATTGTCTTCACCACCAACCACAA AGAAAGACTAGACCCAGCTCTGTTGAGGCCAGGAAGAATGGACGTGCACATTCACATGTCCTATTGCTCCTACCAAGGCT TCAAGCTCTTGGCCTCAAATTACTTGAGCAATATTTCCCCTGATCACCAGAGCCTCTTTGGTGAAATTGAAGGACTCATA GAGGACATTCAGATAACCCCTGCACAGGTGGCAGAGGAGTTGATGAAGAGTGAAGACGCTGATGCCACACTTGAAGGATT CGTGAAGCTGCTTAAGAGGAAGAAGATGGAAGGTGATGTTTGTGAGAATTTTAGTGCTCCAGATAAGGCAGAAGAACCAT CTAAAAGGCGCAAGGTTGCTGCAGGTTGCAAGAAAAAACGAGGGGGTGGTGGTGTTGGGATCAACGAGAACAATGGTACT GTTGCTGTTACCCAAAGAAGGACAAGAAGAGGGTGTAGTTTATGATGATCAGCTGATAAATCTAAAATGTGCTCCAACAT TTTGATGAATGTGAGAAGTATGTCTGTATGTACTAGCTAGAATCTGTCTAAGTATGTCTGTATGTTAGTATGTACTAGCT AGAGACAGTGTGAAAAATTAGTTGTCTTTTTAAGTGACTAACGGTACCATTCGGATGTTAGACTGATCTATTTATTTACA ATGGTTTGTTTAAATTACACATTCTCAAAATCAATTTTTCTCTTTCCAAC
CDS sequence (LotjaGi2g1v0387000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCTCCAAGAGAAATGCCTTCCCCTTCCTCCATCTTCTCCGCCTACGCCTCCATGACCGCCTCCATCATGCTCGT CCGTTCCATGGCCAACGACCTCATCCCTCAACCAATCCGCGGCTACCTCACCAACGCCATCCGCCGCCTCATCATCAAGC CTCGCTCCCCTACTCTCACCCTCATCATCGAAGAATCCTCCGGCATCGCCCGCAACCAAGTCTACGACGCCGCAGAAGCT TACCTCTCCACCAGGGTCCGCCCTGAAAACGAACGCCTCAAAATCAGCAAGACCCCAAAGGAGAAGAAGCTCACCATCCG CCTAGAGAAAGATGAGAAGGTTGAAGATATCTACAACGGTGCTTCTCTTATCTGGAAATTCATCTGCGCAGAGACAGAGA AAAACAGCACCTTGAGCAACAACCACGACATTCACAACAACAGTGTTTCCTTGAGATCGGAAAAACGCTATTTCGAGCTG AGTTTTCTCAAGGAGCATAAGGAGATGGTGCTGGAGTGTTACCTTCCCTTCATTCTTGACAGAGCTAAAGAGATGAAGGA TGAGGACCGCGTGTTGAAGATCCATACACTGAACGCTTCTTACTGTTACAATGTAATCAAGTGGGACTCCATAAACCTTG AACACCCGTCAACTTTTGAGACTTTGGCGATGGAGCCGGAGGCGAAGAAGGCGGTGATGGAGGACCTGAACAGGTTTGTG AAGAGAAAGGAGTTTTACAAGAAGGTGGGGAGGGCGTGGAAGCGCGGTTACTTGCTATATGGGCCTCCGGGAACTGGGAA ATCGAGCTTGATTGCAGCAATGGCGAACTATTTGAAGTTTGATATCTTTGACCTGCAGCTTGGGAATATAGTGAGGGATT CGGATCTAAGGAAGTTGCTTCTAGCTACCGCGAATAGATCCATTTTGGTGATTGAGGATATTGATTGCAGCGTGGATCTG ACGGAACGTCGCAATGGAGGAGATGGACAAACTGATGTACAGCTGACTCTGTCCGGATTACTGAACTTCATAGATGGGCT CTGGTCAAGCTGCGGAGACGAGAGAATCATTGTCTTCACCACCAACCACAAAGAAAGACTAGACCCAGCTCTGTTGAGGC CAGGAAGAATGGACGTGCACATTCACATGTCCTATTGCTCCTACCAAGGCTTCAAGCTCTTGGCCTCAAATTACTTGAGC AATATTTCCCCTGATCACCAGAGCCTCTTTGGTGAAATTGAAGGACTCATAGAGGACATTCAGATAACCCCTGCACAGGT GGCAGAGGAGTTGATGAAGAGTGAAGACGCTGATGCCACACTTGAAGGATTCGTGAAGCTGCTTAAGAGGAAGAAGATGG AAGGTGATGTTTGTGAGAATTTTAGTGCTCCAGATAAGGCAGAAGAACCATCTAAAAGGCGCAAGGTTGCTGCAGGTTGC AAGAAAAAACGAGGGGGTGGTGGTGTTGGGATCAACGAGAACAATGGTACTGTTGCTGTTACCCAAAGAAGGACAAGAAG AGGGTGTAGTTTATGA
Protein sequence (LotjaGi2g1v0387000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSPREMPSPSSIFSAYASMTASIMLVRSMANDLIPQPIRGYLTNAIRRLIIKPRSPTLTLIIEESSGIARNQVYDAAEA YLSTRVRPENERLKISKTPKEKKLTIRLEKDEKVEDIYNGASLIWKFICAETEKNSTLSNNHDIHNNSVSLRSEKRYFEL SFLKEHKEMVLECYLPFILDRAKEMKDEDRVLKIHTLNASYCYNVIKWDSINLEHPSTFETLAMEPEAKKAVMEDLNRFV KRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDL TERRNGGDGQTDVQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLS NISPDHQSLFGEIEGLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRKKMEGDVCENFSAPDKAEEPSKRRKVAAGC KKKRGGGGVGINENNGTVAVTQRRTRRGCSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 485 | 485 | 4.4E-260 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 485 | 485 | 4.4E-260 | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 511 | 480 | - | – | |
| Pfam | 35 | 128 | 94 | 4.4E-21 | ||
| SUPERFAMILY | 152 | 436 | 285 | 4.76E-48 | ||
| Gene3D | 208 | 385 | 178 | 3.4E-46 | – | |
| SMART | 253 | 387 | 135 | 2.6E-9 | ||
| CDD | 254 | 385 | 132 | 2.9618E-12 | – | |
| Pfam | 258 | 384 | 127 | 3.0E-19 | ||
| ProSitePatterns | 355 | 373 | 19 | - | ||
| MobiDBLite | 461 | 484 | 24 | - | – | |
| MobiDBLite | 461 | 475 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0387000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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