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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0407000 |
| Transcript ID | LotjaGi2g1v0407000.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3; TAIR: AT4G37510.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9SZV0|RNC1_ARATH Ribonuclease III domain-containing protein RNC1, chloroplastic; TrEMBL-Plants: tr|A0A151SCA9|A0A151SCA9_CAJCA Ribonuclease 3; Found in the gene: LotjaGi2g1v0407000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90431555..90437947) extracted from Lotus japonicus Gifu genome v1.2.
TCCCTAATCCCTAACTAATAAATCAGAACAAACTCAGAAGAGAACCAAAATCCAGAGGGAGAAGAGGGAGAAAGAACAAA GGAGAAGAAGAAGCAGCTTCGCTGGTGACAGAGGCGAAGGTTGATTGGAGAAAAGGCGACGGCGAGGGAGGTGGTCATAG CGACGAAGAACCCAAGGGTTCTTTCATCCCTTTTAGACTTAGATTTGCGAGAGAGGAGGTAAAACCCATGGCTTCAACTT CTTCTTTCTTTTCGACGACCCACTTTTACTCCTCAAACTTCTTCTGTGGCACTGTCTCATCTTCCTCCTCACGTTCTTCA TCTTCCAAAGAAGAGGATAAACAGAGATCTGATGAAAAGAAAGGTTGTCGGGGTTGTATTTATGGGTTTGGTTTTCATGT TTCTGGGCTTGATTTTTTGGTTTCGTTTTTCTGGGTTTCGTTTTTGTGGAATGGATGTGGTGGTTGCAGTTTGATTCCAG ATATGTTTTCATCTTAGAAATTCATAATCCTGGTATTTCTCTTTCCAGATCCGTTACTATATCTTTTATATGGTATGTTT CCATATTCCCAATTGTATCTGTTGTTCCAGATATGCAACAAAGAAATTGCATGTTATGGATTTAACTTTACAAGAATGAA ATCTCAAGTAAAGGAATTAAATGTTTTAGAAAGATTAAAAAAATTTCATGGCATAATGTTTGGTCGTGATTCCTGTTTGT GGGTATCACTAGAATGTCTATGCAGATATAGAGATCAAGATTTGTTGTTGTCCCCTGAGCAAAGCATTCATGTGAAGATA CAATAGATTTTATATTCTATGTTCTTCATCTCAATCTGGGTTAAATTTATTAATTATAATTGATAAATACATGTGTAATA AAAAAAATTTAAAAAAGCCACGTGGAATTGATGATTGTGCAAAATTTCAGGCACATAAGGACATAACACGAGTATGGACT TATTTAGATTAAAAAACAATTTCCAGGGATCCCAAATCAGAAAAAAAAAATTCAGGGACTTATTTTCACATGCCATACAA TTTCAGGGACCTCTAACATATTTAAACCTTATTTTTTTTAAACAACTTACTTCTTTCATTGATATTTTTTTTTTCCAAGG TGTTCCCACAATCGACAGCAATACGACTAATACTTAAGACTATAAGATCCCTTTAAGTAAGTAGGTCTCTCCAAAAAAAA TGCTTCTCCATACACACACTCAGAAATCAAAATATAAAACTATAGACTAAATGTTCATTGATCATTCATGTTTTGGCCTC CGTGCCTCTTCGGTAAACTTGATTACTATAAAAAAAAAAAAAAAGATGACAAACGACGTGTCGTTCGAAGCCCAGAGTAG AGAAAGGCTCGGCTTGGCTAGCCGAAAGAAGCTCACGCCAAATAAAATCTGAGATATCTTTCCACGATGTGGCACGCTTC ATCACCTTATCCAACCCTTTTGAGTCCAAACTCCAAACCAAAACCCTGCAACTCAACACAACACCCCAAACCCTGTTATC CATGGTCTCAAAACCGATACCAAAATCCACCAATCAATCAAATTAATCCACCTTCTTCAACCAACATTCTTCAATTCTCA CCACATCTAATGGAGCTCTCTTCCTCCTTCTTACTCTCCCCAAAACCATGCTCATCCCCATCCTCTAACTACTCCTTCTC ATCTTCCATCTCTCCATTTCCAATTCAAATCCTCATCAAAAACCCCCAATCTCGAAACCCTAGCTTCCGCATTCTCGCGG TGGCCGTAGACCCGACGAAGGAACTCTCCAAGAACAGCCCTCAGCGCCTTCTCAAGGAGCTCGCGGAACGGAAGAAAATC ACTTCACCGAAGAAGGGACCACCGCGAAGATTCATCTTGAGACCACCATTAGATGACAAGAAATTAGCAGAAAGATTCCT CAACAGCCCGCAGCTTTCTCTCAAATCGTTCCCTCTGTTGAGTTCTTGCTTACCCTCCACGCGCCTCAACAATGCAGACA AGTTGTGGATTGATGAGTACTTGCTTGAAGCTAAGCAAGCTCTCGGGTACTCGCTCGAGCCATCGGAGACGCTCGGGGAT GATAATCCGGCGAAGCAGTTTGATACTTTGCTGTACTTGGCGTTTCAGCATCCTTCTTGTGAGAGGACGAAGGCGAGGCA CGTGAGGTCGGGGCATTCGAGGTTGTTGTTTCTGGGGCAGCACGTGCTTGAATTGGCGCTGTGTGAATTCTTCTTGCAGA GGTATCCGAGGGAGTCGCCGGGGCCGATGAGGGAGAGAGTGTATGGTTTGATTGGGAAGAGGAGCTTGCCTAAGTGGATT AAAGCTGCTAGCTTGCAGAATTTGGTGTTTCCATATGATGATATTGATAAGATGTTGAGGAAGGATAAGGAGGGACCTAT AAAGTAAGTTCTAGCTCTTAATCTCATGTGAAATTCTTGTTTTCCTAGGAAAAGCTCATGGTTACGATGAGAATGTAATT TAGATTAAGTGCATGTTTGGAAATAGTTATACAATTGATTCTAAAGCCAAAATTAAATGTGGTGAGAAACTTATAGAAGT AGCTTCTAGGGTGTTAGAATTGATTCTGAAGAAAGAAAAGTTGATCGAAACATGCTATTAATCAATTGTGGATCTAGCAT TACTTGCTTGCTTTCGATGAGCCATATCCGAGTTTGCCTCTTTTTCCAAGTTACTTCATGATGCAATTGCGCTTGAAATT ATGCTTGCTAGAGTTTCATGTACTTACAATAGGCCCACATTCTCAAGCAAAACAAAAAATAGAAAATAGCACAATGCCCG CATTCTAGGGGGCAGATCCGGTGTCTTGAATTAGCTATTCTCTTCTCACATTGGCAAATTTCTTGGTGAAGTCAGTTTAA ATATCACATGACTGGTCTTTGACCATTCAATGTGAGCTGACATGTGCATTTCTTCTCGTGAATGAAGTTTGCATTTCTAT TTGCTTTGAAGTTGCTTAATGTGGCTTTCTGTTTTCCTCTCATGGTATTCTTTTGAATGTTACTTAAAAACACAATGGTT AATGAGCTTGGCATACTAAAAATCGAGAATTCAGATTTTAAATTTATGTGGATGTTGTAATGGCTTCAAATAGAATGATT GACTGAAATTTGGACATAAATTCTTGTTCAGTGTACACCAGCCTTAACTCTCTGACTTCAAATTTTGTTTTGCATTGTGT CTAATCAGCATCCATGATTTGAACCACAAGTCCACAAGTTTGTGATATGACTATAGGTTTAAATAAATGCTTAAAAGGCC AATGTGACCTATGGATCTGGTGCCATCTTCTTTCAAGCTGAACTTGTTTGGTGATTAATGAACTCAAAATAAGGAGATGG CCAATGTGACCTTGATAATGATAGACAAAAATGTTGAATACTTACCTTAGAGTTAGTGGATGATGTTTTTATTGCTCTAG GTAATCAATTTATAGTAGAACCATCTTAATCCACTGAGTTGGTCTCTAATCATGATCTATTTCTGAAATTTATTGTTTTC TGGATTTTGACATTTCGTATTCAATGGTAGGTCGGTCTTTTGGGCTTTGTTTGGGGCAATCTATCTTTGTTTTGGTATGC CAGAAGTGTACCGTGTTCTTTTTGAAGTCTTTGGAATGGATCCAGATGCTGAGGATTGCCAGCCTAGGTTGCGCAGACAA CTTGAAGATGTGGATTATGTATCAACTGAGTTAGAAACCAAGCTCAGTTGGCAAGATATAGTTACATATAAGGCAAGATT TAAATATCTTCTGTTAAAGTTCAATTTTATTTTTTTCAAAGCAAAAATTAGCTCATAAAGATTGACACATCATGAACATA GCTCAGACTTTATTAATCCAATTCCATTAGGCACTCAGCTACTTTTCTGCATCATTCCCAAATTTCAACACAAAAACCCT CCTCTAGAATACAATACTTTATTACTCCCTCCGGTCCTATTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAGAAAT GTAGTTAAACTAGATAAAATGCATTAAATATGTCTTGAATCAAAATAAACTTCCAAAATTACCCTTTATTATTAGTGTTG GAAAGTGAAAAAGAGAGAGAATAATTAATGAGACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAAATC ATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGAC CGGAGGGAGTATTAGATTGAGACACATAAATGATGTTTACTGTTCTTCATTCAGCCTCCTCCAGATGCTCTGTTTGCACA TCCAAGACTGTTCAGAGCTTGTGTTCCCCCAGGCATGCATCGGTTCAGAGGAAATATCTGGGATTTTGATTGCAAACCCC AAGTTATGAAAGCACTTGGATATCCATTAGAAATGACTGACAGGATACAAGAAATTACTGAAGCCAGGAACATAGAGCTT GGACTCGGATTGCAGGTAGCTATACTTTTTCCTTTGCCCTATCAGGCTATTAAAAGCACAGATTTGGCTTCACATGCTAG ACCTGGGTTGGATATATCTGTTGTTTTCCTGAACAAGTAAACAAACAAATCTTATTGCTTCTGCTTATGATCTCCTCTCA TGCTTCACATTTAATGGCGCCAAAGCAGTTGAGTGATATGTTAAAGTCTAAAAGTTGTCTGTCAAAGTTACAGAGCTATT AAACCCCCCGTGACACTTTCAAGTTCTTATGTGGAGTTTGGGAAGGTAATTTAAAAAAAAAAAATACACTGAGGGGCGGC AAGTGGAAACACAATCGGTAGTTAGTTATGATTGGTTTTGACCAATTTATTTTTACCTGGTTTAGCTGTTTAGGTCTTTG CTGTTTTGCTTGATATAATTTGCTCATCTCCACACAGTTCACTGCATGGCAAAAAAAGTCCTGCCTTAGAAATACCGAAA TATTAAGCGTATTTAAAGTTTAACTAGGAAACTGTCAATCTATTTGATTATGAAGTCAACTGGGATCTTCTTAACCCTTT TGTGGAAAATGTAAATTCAATAGTCAAGACTTTGAGAGCTCCCAGTATTCTATCATAACTTATGACTTCTGATGGTGAAT GTCATATCTACTTGCAGCTTTGTTTCATGCATCCATCAAAGTACAAATTTGAGCATCCTCGATTTTGCTTCGAGAGATTA GAATATGTTGGGCAAAAGATACAGGTACTGTTCTTTCTGCTGTCTTTACTCAATAGGACAATTTAACTGCATTTGTTGAA AAACTCTTAAATTATTCATGGGAGATATCATTTATTTATTGCTATACTTATATTTATTATCTAAATTTTTCTTCTCCATT GAATACTGTCTAATATTTTTATTTTATGGTTGCCTTAAGGATTTGGTTATGGCTGAGAGATTATTGATGAAGCATTTAGA TGCTCCGGGGATGTGGCTACAAGAGAGACATCGTCGCGTTCTTATGAACAAACACTGTGGAAGATATTTGAGGGCCAAAC ATCTCCACGGTTTTATGATATATCATGAAACGGTTCAAGACTCTTATGAGCGCAACAGGAGAAGGAGAAACCCAGCCTCA ACAGCTGTTCACCAAGCTCTTCATGGGCTTTCATATCTTGTATATGGGAAACGTGATGTGAGACGTTTGATGTTTGAAGT TTTTGACGTTGAGCAGACCCAACCTAAAGAAGTCTCATAGTGTGTTTGGATTGATAGTGGTGCACAATCCCAAGCATGTT AAAACCAAAACTACACTAGCTTCTCTCCAGAAGTGATTATGGGCCTTCCTTCAGCAGAACCAAACACGCTATGTATTTGG AGGGGGAAAAAAAGTTAAAGCACTTTCGTTTTGCTTGTTCACCTCTTTCTTTTTTTCTTTTCTATCTCCTTAATCTAGGC TTTTCCATATTGTGTTATGAGTTATGACCCACCTAGTTGTAGGTGTTTTACGAATTCTTTGGAAGTCGCTCTTGTATATA TTGAATGATTGTATTTTATCTTTTTAAACTTTGGCCCCTGACAAACCAAAGTGAATGGAGATGAGGTTACATACGTGAAC ATGTTTGATTCTCCATATAGCACAGACAATGGAGCAAAAGCATCCTAACGAATGAGTTGTGTAGCCAGTGTAGGTATGAT TTTTGAGAATTTTACTGAGATTTTCACGATACAAATGAGAAAACGAAGAGTGGCCCCAACTCCACCATTTTGAAGCAGAG TTTGAGTGAAGGTACATAATTTTCATTTTGGCTGATGTGGAATTCCACAGGTTGTATTGGTCGATTGGAAAGTTTGCATT TGTTGCGAGGGGCTCAGCTTTGCATAACCCATGATTGTGTACATGGAACCTGATATCTGGTAGGTAACCACCC
CDS sequence (LotjaGi2g1v0407000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCACGCTTCATCACCTTATCCAACCCTTTTGAGTCCAAACTCCAAACCAAAACCCTGCAACTCAACACAACACCC CAAACCCTGTTATCCATGGTCTCAAAACCGATACCAAAATCCACCAATCAATCAAATTAATCCACCTTCTTCAACCAACA TTCTTCAATTCTCACCACATCTAATGGAGCTCTCTTCCTCCTTCTTACTCTCCCCAAAACCATGCTCATCCCCATCCTCT AACTACTCCTTCTCATCTTCCATCTCTCCATTTCCAATTCAAATCCTCATCAAAAACCCCCAATCTCGAAACCCTAGCTT CCGCATTCTCGCGGTGGCCGTAGACCCGACGAAGGAACTCTCCAAGAACAGCCCTCAGCGCCTTCTCAAGGAGCTCGCGG AACGGAAGAAAATCACTTCACCGAAGAAGGGACCACCGCGAAGATTCATCTTGAGACCACCATTAGATGACAAGAAATTA GCAGAAAGATTCCTCAACAGCCCGCAGCTTTCTCTCAAATCGTTCCCTCTGTTGAGTTCTTGCTTACCCTCCACGCGCCT CAACAATGCAGACAAGTTGTGGATTGATGAGTACTTGCTTGAAGCTAAGCAAGCTCTCGGGTACTCGCTCGAGCCATCGG AGACGCTCGGGGATGATAATCCGGCGAAGCAGTTTGATACTTTGCTGTACTTGGCGTTTCAGCATCCTTCTTGTGAGAGG ACGAAGGCGAGGCACGTGAGGTCGGGGCATTCGAGGTTGTTGTTTCTGGGGCAGCACGTGCTTGAATTGGCGCTGTGTGA ATTCTTCTTGCAGAGGTATCCGAGGGAGTCGCCGGGGCCGATGAGGGAGAGAGTGTATGGTTTGATTGGGAAGAGGAGCT TGCCTAAGTGGATTAAAGCTGCTAGCTTGCAGAATTTGGTGTTTCCATATGATGATATTGATAAGATGTTGAGGAAGGAT AAGGAGGGACCTATAAAGTCGGTCTTTTGGGCTTTGTTTGGGGCAATCTATCTTTGTTTTGGTATGCCAGAAGTGTACCG TGTTCTTTTTGAAGTCTTTGGAATGGATCCAGATGCTGAGGATTGCCAGCCTAGGTTGCGCAGACAACTTGAAGATGTGG ATTATGTATCAACTGAGTTAGAAACCAAGCTCAGTTGGCAAGATATAGTTACATATAAGCCTCCTCCAGATGCTCTGTTT GCACATCCAAGACTGTTCAGAGCTTGTGTTCCCCCAGGCATGCATCGGTTCAGAGGAAATATCTGGGATTTTGATTGCAA ACCCCAAGTTATGAAAGCACTTGGATATCCATTAGAAATGACTGACAGGATACAAGAAATTACTGAAGCCAGGAACATAG AGCTTGGACTCGGATTGCAGCTTTGTTTCATGCATCCATCAAAGTACAAATTTGAGCATCCTCGATTTTGCTTCGAGAGA TTAGAATATGTTGGGCAAAAGATACAGGATTTGGTTATGGCTGAGAGATTATTGATGAAGCATTTAGATGCTCCGGGGAT GTGGCTACAAGAGAGACATCGTCGCGTTCTTATGAACAAACACTGTGGAAGATATTTGAGGGCCAAACATCTCCACGGTT TTATGATATATCATGAAACGGTTCAAGACTCTTATGAGCGCAACAGGAGAAGGAGAAACCCAGCCTCAACAGCTGTTCAC CAAGCTCTTCATGGGCTTTCATATCTTGTATATGGGAAACGTGATGTGAGACGTTTGATGTTTGAAGTTTTTGACGTTGA GCAGACCCAACCTAAAGAAGTCTCATAG
Protein sequence (LotjaGi2g1v0407000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWHASSPYPTLLSPNSKPKPCNSTQHPKPCYPWSQNRYQNPPINQINPPSSTNILQFSPHLMELSSSFLLSPKPCSSPSS NYSFSSSISPFPIQILIKNPQSRNPSFRILAVAVDPTKELSKNSPQRLLKELAERKKITSPKKGPPRRFILRPPLDDKKL AERFLNSPQLSLKSFPLLSSCLPSTRLNNADKLWIDEYLLEAKQALGYSLEPSETLGDDNPAKQFDTLLYLAFQHPSCER TKARHVRSGHSRLLFLGQHVLELALCEFFLQRYPRESPGPMRERVYGLIGKRSLPKWIKAASLQNLVFPYDDIDKMLRKD KEGPIKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEDCQPRLRRQLEDVDYVSTELETKLSWQDIVTYKPPPDALF AHPRLFRACVPPGMHRFRGNIWDFDCKPQVMKALGYPLEMTDRIQEITEARNIELGLGLQLCFMHPSKYKFEHPRFCFER LEYVGQKIQDLVMAERLLMKHLDAPGMWLQERHRRVLMNKHCGRYLRAKHLHGFMIYHETVQDSYERNRRRRNPASTAVH QALHGLSYLVYGKRDVRRLMFEVFDVEQTQPKEVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 8 | 26 | 19 | - | – | |
| PANTHER | 57 | 594 | 538 | 0.0 | – | |
| PANTHER | 57 | 594 | 538 | 0.0 | – | |
| SUPERFAMILY | 197 | 354 | 158 | 5.58E-21 | ||
| ProSiteProfiles | 199 | 341 | 143 | 14.559 | ||
| Gene3D | 223 | 355 | 133 | 3.1E-15 | ||
| CDD | 227 | 361 | 135 | 2.43383E-26 | ||
| SMART | 227 | 364 | 138 | 2.4E-23 | ||
| Gene3D | 451 | 588 | 138 | 2.1E-9 | ||
| CDD | 459 | 584 | 126 | 1.61194E-18 | ||
| SUPERFAMILY | 459 | 585 | 127 | 1.64E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi2g1v0407000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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