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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0415000 |
| Transcript ID | LotjaGi2g1v0415000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT4G17950.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q940I0|AHL13_ARATH AT-hook motif nuclear-localized protein 13; TrEMBL-Plants: tr|A0A0L9UQM7|A0A0L9UQM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0415000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91271404..91275311) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCCCAATACTCCTCCTTCCGTTCCCTTGGGCTTTTTGTTTTTTTCCTCGCTCTCACAACATAAATACACACTCTCT CTTTCTCTCTGCGTGCTCTTAATAACTGCAACTCTGCAAAGCTAAGAACCAACACTCATTTCCTGGGATTCTCCCAGGAC CAAAACCTGCATTGCATTTGGGGTTTACTTTCCTCCCTCCGCCACCATGGATTCTCGCCAACCTCCGCATTCGCAGCCCA ACATCACCATGGGACCCACTCCCTACCCCTACCCCCACCCCAACGCCACCATCACCCCCTCCACCATGGCCCCTCGATTC CCACCATTCAACACCCCCACCACCACCACCACCAACAACAACAACCCTTCCGAGCATTTCACCATCACCAGCAACAACAC CAACAGCGACGCCTCCGCCTCCTTGAAGCCCTGCGGTTCCGCCTCTGACTCCGTCAAGAGAAAGAGGGGCCGCCCTAGGA AATACTCTCCCGACGGCAACATTGCTCTGGGCTTGGCCCCTTCTCCTTCTTCCTCCGCCAAGAAGAACAGAGGAAGACCC CCTGGCTCCGGGAAGAAGCAACTCCACGCGCTCGGTATGTGACTGCTTTCTCCCATCCCTCAATTTGTTCGATTATTCAT TATTCATTGTTTTCATGATCGATCGATTGTTCAATTCTCAGGAACTACTGGCACTGGTTTCACTCCCCATGTTATCACCG TCGATGCTGGCCAGGTATGCACTGATTCTCAATTTCTTCTATTCGCTACATTGCATTCCACTACATACTCACACTCATCT TGCATGTCACTGTTTGGAGCATTTGGGAACCACTATTTTCATCTATTTACCCTATGCTCATACTGTATCACCACTCACAA TTTTAAAAGCTTAGTCAATTTCAAAACTGCTGTACTATGCTATGCTAATGTGGATTCATTGTCCAGGGTATATATATTAT TATTAATGTTTTATGTTTTAGAAGTTTGTGTTGGCTGGCCTGGTGGTGGTGGGGGTGACTATTTGGTACAATTTGTTGTT TTTTTGTTACCATTGTGCTTTTCTTGTTTGTAGGACATAGCTGCCAAACTTCTGGCCTTTTGTCAACAAGGACCTCGGAC AGTTTGCATTCTTTCTGCTTCTGGTGCAGTCCGCAATGTCACCCTCGAAAAGCAAGCTGCGTCCGGGGGTGTTGTCATGC ATGAGGTAATTTTTATTTATCATATCATATTGGAAATTATCTTATGCAATATGTGTTTGCTTGATGTGCGTGTTTTATGA AGTACTTTGCTTGTCATGAAGAACATGAAATTAAGTGATTTCAATCTTAGAGAGGTGTTGCCAACTCCGAAAATGCTTTA TAGATTTATTTAATTTATACGACTATGCCGAGTGGAGATGTGTTCTTCATCCTCCTCTTCAAATTTGACCCTTTTTAGTT TGTTTTTTAAGTAGAAACCATAAAATAGCGCACCCCCCCCCAGATGCCATAACAATAACTCTTGAATGACATTTTTTTAT TCTCATCAGTCTCATAGAATAGTGGTCAAATAGCTCTGGGATGGCCACTTTTATCACAGTCATTTGTCTGAGTGCCTTAT TTTTCATTCCATACTGATTACTGAAACAAGAAAAACCTGCGTGTTTCGTGTGATGCCAGCCTGAAATAATTTTTTAGTGT CCTGCTTTTTTGATGTCCTTTTCTTTTGGGTTAAAATTTTTGCATACACTTTCTACTATGACATGGGAGCTATACGGGGT CATATAATTTCAAATCTATTATTGTAGAAGGTCTTCTATCTTTCTAAGAATATTTCATGCTTGCTTAATATTAATTACAT TTAGTTTGGTTCTGACTATATAAGAATGATAGCTTAGAGAATACAAGAACAAAATGGTAATTGAATACAGCAAGATTTTT TTTCTTGTTATATTTTAATACTACTTATTTCGAAGTAAAAATAAAATCTTACTTTTAACTGGCAGGCTGCCGCTAGATTG ACTGGAACTAGATGAGCCATCTGCTATATTGCTGATTGATCTTTCTATTGAATTTTAGTAACAGGAAAGTTTGGCAAGGA ATTCATATGAATTATAAAAGGATCATATTCATCTTCTCAAATAATGTGATCCTTTTATAGGAAATGAATAATGTTTGGTT ATATAGTTGTTAATTTTTCTACATGCATGTTCTCAAAAGGACAAATAATATATCTTTTTGGGAAAAAATGGGATGGGAAA TATATGTAGGTAATGACAAAAAACTTAAGTGAGAGCAACAGCAGGAGATCTTAGGAACAGGAGTCTGGTGCTGGTCAATG TGGGTTTTTTGGGGTCTATAATGTATTGGGTTGGCCATGCTAACAAATGGTGTAAGAGGCCGAAATCAAGTGAGAAGCTA TTATTGTCTTGGTGGCTGCTTATGGTACCTGTACAGTAGCATTGTATTAAAAACTGGAAGTATCAGGATTTGGAATAATT TGGGTGATGGTGAAGATGGGTTATTTATGCTTCTGGGGTAAGTTTTGAGTCCTGAAGTCCTGATTGTGAGAATTACACCT TTATTTTGATGCTCCGTGATCCTTGTCCTAGTAGACATTGTTGACCATTTCTGAACCAAAATGTAATTTGGAACACAGTT ACAGAATTGCCTTTATTGCACTACATTGTTTAGCATTCAGGTTTACCTTTAGGTTTTGGTTAAAAATTCTCTATTCTTTT TTTTTTTGGCAAATGCATCTGTTCAGATATATGATTTACTTATGCATGCAAGTAATGTTGTGCGTGCAACCTGCAATTTC TTGTCTTTGCTTTTACTATATGCTGCTTCCTATTTTCCACAAGCTCTCCTGTTTGGGAAGGGTATATTTATTTCATAATA GGGATTAAAAGTCAATAATCATATTGGTGGTTTTTTTTTCCCTGAGAAGTAAGCAAGTTTAGTGACAACTTTTATAATAT CTCGTATTCTGTCTTTTTTCATTCCAGGGCCAATTTGAGATCATATATCTCTCAGGTGCTGAACTACTATCTGAAAATAG TACTGGTAGTAACAGAATGGGTGGCTTGAGTGTGAATCTAGCAGGGCCGGATGGACGCATTTTAGGAGGCAGAGTTGTTG GAATGCTTACTGCCGCATCTGCAGTCCAGGTATTGCTCTCAAACGGTAGAAATTTTATATTGAATTGTAAACAGCAGATC CACAAGCAGATTGCTCTCTAATAGCATATTGGATTTCTGCATGAAGGATTCATCAAACTCTGATGCATTGCTTTTGTGAC TCTTTAAAAATTACCAACAGGTCATTGTGGGTAGCTTTATTGCGGATGGAAAAAAGTCTAACTCAAGTAACCTGAAATCT GGACCTCCTTCTATGCCGTCTTCCCAAACGTTAACTTTTGGTTCTCCCGTGACTCCAGCTAGTCCTCCTACCTCTCAAGG GCCTTCAACCGAGTCGTCTGATGACAATGGGAATAGTAGGCCTGGACTCTACAATAATGCCAGTCAGCCCCTTCATAATA TGCCAATGTACACTCATCAAATATGGGCTGGCCAAACTCATCAGTGAGGATGCGTTTTTGTGTTTAACAGTGCAGAAGCA GGGTATTTTATATGGCGATTGTTCAAAGTAGTGGCTAGAGGTTGAATTCTAAAATGCTAACATGGCATTATTGGGGCTAG TTTTAGGAGGGGGTCTATCTTAATGTCCATATAAATTTCTATTCATTTTTCTGCTTATCTAGATTTTTAAATCATCAGTG AACCGTAGCTAGTGATGATAGCTTATGTTTATTTAGCTTGTTACTGATTTGGATCCGCTTGTATTTATCAGATATTAGAT GTGAGCTGCTGTGGCTGTTCCCCTTATCATCGCTGCATATTCTTTTTTATTCATTCACTAGTACTTTT
CDS sequence (LotjaGi2g1v0415000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTCGCCAACCTCCGCATTCGCAGCCCAACATCACCATGGGACCCACTCCCTACCCCTACCCCCACCCCAACGC CACCATCACCCCCTCCACCATGGCCCCTCGATTCCCACCATTCAACACCCCCACCACCACCACCACCAACAACAACAACC CTTCCGAGCATTTCACCATCACCAGCAACAACACCAACAGCGACGCCTCCGCCTCCTTGAAGCCCTGCGGTTCCGCCTCT GACTCCGTCAAGAGAAAGAGGGGCCGCCCTAGGAAATACTCTCCCGACGGCAACATTGCTCTGGGCTTGGCCCCTTCTCC TTCTTCCTCCGCCAAGAAGAACAGAGGAAGACCCCCTGGCTCCGGGAAGAAGCAACTCCACGCGCTCGGAACTACTGGCA CTGGTTTCACTCCCCATGTTATCACCGTCGATGCTGGCCAGGACATAGCTGCCAAACTTCTGGCCTTTTGTCAACAAGGA CCTCGGACAGTTTGCATTCTTTCTGCTTCTGGTGCAGTCCGCAATGTCACCCTCGAAAAGCAAGCTGCGTCCGGGGGTGT TGTCATGCATGAGGGCCAATTTGAGATCATATATCTCTCAGGTGCTGAACTACTATCTGAAAATAGTACTGGTAGTAACA GAATGGGTGGCTTGAGTGTGAATCTAGCAGGGCCGGATGGACGCATTTTAGGAGGCAGAGTTGTTGGAATGCTTACTGCC GCATCTGCAGTCCAGGTCATTGTGGGTAGCTTTATTGCGGATGGAAAAAAGTCTAACTCAAGTAACCTGAAATCTGGACC TCCTTCTATGCCGTCTTCCCAAACGTTAACTTTTGGTTCTCCCGTGACTCCAGCTAGTCCTCCTACCTCTCAAGGGCCTT CAACCGAGTCGTCTGATGACAATGGGAATAGTAGGCCTGGACTCTACAATAATGCCAGTCAGCCCCTTCATAATATGCCA ATGTACACTCATCAAATATGGGCTGGCCAAACTCATCAGTGA
Protein sequence (LotjaGi2g1v0415000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSRQPPHSQPNITMGPTPYPYPHPNATITPSTMAPRFPPFNTPTTTTTNNNNPSEHFTITSNNTNSDASASLKPCGSAS DSVKRKRGRPRKYSPDGNIALGLAPSPSSSAKKNRGRPPGSGKKQLHALGTTGTGFTPHVITVDAGQDIAAKLLAFCQQG PRTVCILSASGAVRNVTLEKQAASGGVVMHEGQFEIIYLSGAELLSENSTGSNRMGGLSVNLAGPDGRILGGRVVGMLTA ASAVQVIVGSFIADGKKSNSSNLKSGPPSMPSSQTLTFGSPVTPASPPTSQGPSTESSDDNGNSRPGLYNNASQPLHNMP MYTHQIWAGQTHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 131 | 131 | - | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| MobiDBLite | 27 | 77 | 51 | - | – | |
| PANTHER | 57 | 332 | 276 | 1.4E-94 | ||
| PANTHER | 57 | 332 | 276 | 1.4E-94 | – | |
| SMART | 84 | 96 | 13 | 0.19 | ||
| SMART | 112 | 124 | 13 | 15.0 | ||
| ProSiteProfiles | 133 | 273 | 141 | 34.408 | ||
| SUPERFAMILY | 135 | 252 | 118 | 5.23E-25 | – | |
| Gene3D | 137 | 260 | 124 | 2.2E-7 | – | |
| Pfam | 137 | 251 | 115 | 1.8E-24 | ||
| CDD | 137 | 251 | 115 | 4.10222E-28 | ||
| MobiDBLite | 257 | 316 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi2g1v0415000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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