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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0432200 |
| Transcript ID | LotjaGi2g1v0432200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase family; TAIR: AT1G12760.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760; TrEMBL-Plants: tr|A0A151TJP1|A0A151TJP1_CAJCA E3 ubiquitin-protein ligase family; Found in the gene: LotjaGi2g1v0432200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92916830..92921801) extracted from Lotus japonicus Gifu genome v1.2.
TAAACCTTATTTACTAAAATATGGGCTTTGATTAATCCGACCAAAAACCGGACAAAAGGCGGCACCCAAATATTTATATA AATAAACAGAGATAAAGCACTGTGCTCAATTCAATATTTCAATTTCACCATTCTCATTTCTTTTTTTTCCTCCAATTCCC AAACCCCTTGTTTCACAATTCAGATAGCTAGCTATCAAAATTCAAAACCGAGTCGTCAACAATCAACTCGCCGACTCAGT TTCCCAATCTCATCATGGCCAGTGCCACGCCGACGCGTTCCTCCGAAGACATCCTCAACACGGCGCCGCTGCTATCAAAT TCCGCCGGCTCCTCCGCCGAAATCAACTCCGACCGTCGATTCGCTCGGAGGCAGAGGCTCATGCAAGCGGCGCGGTTCAT CCGCCAGGCGAGTGGCCAGGGAATGATGCGCGAGCCCTCGGTGATGGTTCGCGAGGCCGCAGCGGAGCAGTTGGAGGAGA GGCAGAGCGATTGGGCGTATTCGAAGCCGGTTGTCATACTCGACCTCGTTTGGAACTTCGCCTTCGTCGTGGCTTCCACC GCCGTGTGTGTTCTCAGCCGAACTGAAGCGCCGGATATGCCTCTGAGGCTGTGGATTGCGGGTTATGCTTTGCAATGCGT TATTCATATGGTTTGTGTCTGTGTCGAGTTTAGGAGGCGGAGGCGGAACCTACACAACGGGGTGCCTGGGGTTAGCACCA GCAGTGCGAATTTGAGTTCTGCTTCAAGGGTGGGTTCTCGTTCTGCTTCTGGCTATGTATCGTTTGCGCAATTCGATGAA GAGCGTACTAGGTGAATTTCTTAACTTTGTTGGGTTTAATTCAGATTAAGAAACAATAAAATTTTCATGACATTTCAATA TATATTAAGGTTTTGATTTTCACTCTTATCAAGAGATTACAGGGATTGTTATGTGATAATTAGCTAATTTTCTGTGAGAG GACTTATTCTTATTCGATTTTTCAAAGCATAGATGTAAGTTTGTAAGAATCACTTTTGAGTGTAATAGTGTATAACAATT CCTCCTTGGACCAATTTGTTTTTTAGAATATAGCAAGGAAAGAATTAGATGCATTATTGAATATGTTCTTGTTCTTCCAT AATCTATACTCTTCACCAAACATTTTTGTTTGTGCATTATGGCAAACATTTCTATCTTCTTCTACTCTTATACAACTCTC TGCTTGAAGATTATGAACTTTCCTTTTATTTTGAATTTGTTTGTTTATGTTTTTTCTTTTTTTACTAAATTTGAACAATA ATTTGAACTCAATTTAATTTATGAGCTATAGTCTCAATCCTATCACCCAAATGGACTCATCTTGTGAATTCGATAATGCA CTGCTTTCTCCAAAAGAATGCATTTTTTTAAGATTAACAAATGCCAGGTTTAAATACATCACTGGTAAGAGGATAGACTA GATAGAAGATAATCCAATAGATAGAGATAGGTCTATAAAAAGTAATTGGCTAAACTATTAGAATGTTTTCATTTATATGG TCTATCATTTGACGTGATTCATGAATATACATTATGTGTTACAACATTATCTAGTGGGAAGTGGGAACAGCTTTAATTAT TGAAGTTATTTTTACCTGATAGGCTGATATGCATTAACCTTCTAGCTTGAATGAGAGAGTTACTTTCTTATTTTGTGCAT ATAAAACAGTGTTTGGGAAGAACCAATATGCCAATAGTAGCTTTGTATTACTGGCAAGCATGAGAGCAATTATTGTTATA CATGGAAACGGCACCATCTATTATCTAATGAATGTAGTTGTCAGTGTTGATTTTTCATTATCTATCTCATGTTTGTTATT TTTCTCCTCAGTGTTGCAAAACATTTGGAATCAGCCAATACCATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTG GGTATCCGCTGGTGGTCAAGATTTAGCCCAAGATTCTCCTCAGCTTTACTGGTTTGCCCTCTCTCAATCTCTCTCCTTCT GATTGTTGACATTTATTTTAATAAACAATTCATTTGTGATTCACTCATCTTTTGGCTATTCAACTCTTATTTTAGCTCAA TACTTTTTGACCCAGTTTACATGCTTCGCAGGCTATGTATAATCTTCCTGGGTTTTGATGTAGTCTTTGTTGTTTTCTGT GTTGCACTGGCGTGTATCATTGGTATCGCCGTCTGCTGTTGTCTTCCATGTATCATTGCAATTCTTTATGCAGTTGCAGA CCAGGTATGTTGGATCAGTCTTTCACGATGCGTTCTCGTTTTTAAGATTTTATAGCTGTATTAATCTACTGTCTGAGAAG CTCTAATTGGAATTACTATATTCTGTGTGAATTTGGTTTGGAATTTACTAAGAATTAATTATCTGTTAAGTGACTATGCA AGTTTAACCATTTCAGAACTGTTAAATAATATGTGGAAAAGATTGATAGAGGAATCCTTGTATTTGTAGAACATGTAAGT AGAGAGATTAGACAAGTGTGACGTCTAAATTCTCCACATGTGGTAAAACCTCAGAGACTGTTTATGAACTTTTGTTCCTC TTATTTAAGGGTTGAAAGCAAGGCATAGTATAACATTTTATATTATTTTACTCTAAAATTAGAGACATGATTTGGAGAGA AAATCCAGTTATTGTAATTTGGAATATATTTTTGGCCAAGGATGGATTCTATGACCAAGTGGGGGGTGGGGGGGGATGGC GGGCATTGATTTTGGGAGGAGTGGGAGTCTGAGAGATGGTGTGGTTGTTGGGATAGGATAGGTTACTGAATTTCATCTTG AGACAACGTGACTTTTGTTTTGGCGGGGTGCTAATTGTTAGAATGTGTAATTGAGATGGGGATTGTTCTCACGTGTAACT GTTATTCTGCACCAATTTTGTATCAAGCCCTTCTCGGAACCAGAGATAGAAGTTTCATAAACATTCGGTTTTCTTTCTAT ATTCTGATTCAGTTCTATCGCAAACTCTGCCTCATAACTTTATTTCCTAGAGTGTGTAGTATATTGTGAATGTATCACTA ATTATGGTCGTTTTAAAATCAATCTTGTTTGCAACTAGTTGGCTGTTGGCCTGCATAAATGTGAAGTGAATATCCAAATG AGTTTATGTTCGACTAGTCATAATGACAATGTTGTATATCCTAGGACTGTTTAAATGGAGATATTTACTGTAATTTATTA ATCTCTCTCTCTCCATGGGTAAAAAAGCAGGAAGGGGCATCCAAGGAAGACATTGAGCAGTTGTCAAGATTTAAATTCCG AAGAATTGAAAGTAATGAGAAACCTACTGGCAATGCTCAAGGACCTGGTGGAGGAATAATGACCGAATGCCTGGCTGATT CACCAATTGAACATGTTCTTGCCGAGGAGGATGCGGTATGTTGTAAACTTTGGTTATGTATGAGCTTAACTTATTCTCAG TCTTCAAGTGGTCTTGCTGCTCTGTATCTTATTGTATATCATTTCACTGTATCCGAATGGGAAATCTGTGTCTCGTTTCA AATACAGACTTTGTTGCATACTCTTTTTATTTACCTATTCACCTTCAGAACACCCTCTTACAATGAAGGATGCTATATGT ATATATTTTGGTTGTATGCGTTCTTGGCCTTCCTACCCGTTTTTTTCTTATCTAGTCATTTCCAGTATCACATTGTACCG CTAAGGAAATTGACATAATGGTTTGAGTGCTAGATAATTCTGATATATAATAACTAAGTTGTTTGACAAATCGGCTTAAT CCTCTGTGACACTAATAATCTTAAGTTTTTCTTTGTTGATGGTATACTATAGGAATGTTGTATCTGCCTTTCTTCTTATG ATGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGGCTGTGTGGATAAATGGCTGCATATTAAT GCTACGTGCCCCCTCTGCAAGTATAACATCTTGAAGAGTAGCAACGTCGGTGAAGAGGAAGTGTGAAGATGTCAGGGTAG TATTTTTTGAGGAATCTGTAGTCTTTTTGATTCACAGTATAATAGGCACAGCTTGTTAATATATACATCCATACAAAGGT ACACAATTGCTACTGCTGCTGTGCTGTTATGGTGTAGGGGTAGTTGTTTTCATTGTTCGTAATTATTGTGGCTTCTAAGT TCTAATTAGATGTGTATATCAGTGTTATTCATTGCATATGGGCTATAATTATCTCAAGAGGCAATTTGGTTGTCATTTTC ATTTCATTTCATTTCGTCTTCATTAATTATTGTTGTATATGAGGGTTGATTCTATAATGTCTCGTATATGAGATTTTGGA GGAACTGTTGTTGACCAAAAAAAACAAAGAACATTACGGTGGAACTGAGGAGGTGTGTTGCAGTGCCTAACTGGTCCCTA TCAATGCTGTCCATACCAGACACACTGATTCATCGGCTTCCAGGAAAGCATTGGGGTGTTTAATTTTCCATATTGTTGCG GCGCTTCTTCCTCTTTCCAATTTTTTAAGTAAATGTTTCCATCATTTCCTGTTTATTCTAACACTTGTTTGTGATTATGT GACGAGGGAAATTCACAGGAGAGTTCGCTTGACGAGAAAATTAAAAACGAGAGAAAAATGAAGGATAGTACTAGTTTTGA ACTTTCCAATTTTCATCGCATATTTTCCTCAACTTAGGTCCATTTTCTTATTTGACCAAAAAAAAAAAGGTCCATTTTCT TAATATTAGTCAAGCTTCCTTATCTTTCTCATTTTTTTCAATCATACCACACGTCATAACTCTTAATTTTCTCTCTCTAC TTTTCTTATCTCTCCGTTAGGTGAAGGTGGAGAGGTGTGAAAAAGTAATTTTCTATCATTTTTCTACCGTGTTTTCTTAA ATTAGTCAATTGGAAATTGTAATGATGTGCTCTGAAACTGGATATAGGTTTAATGTATGAAAAATCGGCTGCAATTAAAT TTTTAAACTGAG
CDS sequence (LotjaGi2g1v0432200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAGTGCCACGCCGACGCGTTCCTCCGAAGACATCCTCAACACGGCGCCGCTGCTATCAAATTCCGCCGGCTCCTC CGCCGAAATCAACTCCGACCGTCGATTCGCTCGGAGGCAGAGGCTCATGCAAGCGGCGCGGTTCATCCGCCAGGCGAGTG GCCAGGGAATGATGCGCGAGCCCTCGGTGATGGTTCGCGAGGCCGCAGCGGAGCAGTTGGAGGAGAGGCAGAGCGATTGG GCGTATTCGAAGCCGGTTGTCATACTCGACCTCGTTTGGAACTTCGCCTTCGTCGTGGCTTCCACCGCCGTGTGTGTTCT CAGCCGAACTGAAGCGCCGGATATGCCTCTGAGGCTGTGGATTGCGGGTTATGCTTTGCAATGCGTTATTCATATGGTTT GTGTCTGTGTCGAGTTTAGGAGGCGGAGGCGGAACCTACACAACGGGGTGCCTGGGGTTAGCACCAGCAGTGCGAATTTG AGTTCTGCTTCAAGGGTGGGTTCTCGTTCTGCTTCTGGCTATGTATCGTTTGCGCAATTCGATGAAGAGCGTACTAGTGT TGCAAAACATTTGGAATCAGCCAATACCATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCCGCTGGTG GTCAAGATTTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTAGTCTTTGTTGTT TTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCCGTCTGCTGTTGTCTTCCATGTATCATTGCAATTCTTTATGCAGT TGCAGACCAGGAAGGGGCATCCAAGGAAGACATTGAGCAGTTGTCAAGATTTAAATTCCGAAGAATTGAAAGTAATGAGA AACCTACTGGCAATGCTCAAGGACCTGGTGGAGGAATAATGACCGAATGCCTGGCTGATTCACCAATTGAACATGTTCTT GCCGAGGAGGATGCGGAATGTTGTATCTGCCTTTCTTCTTATGATGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCA CCATTTTCACTGTGGCTGTGTGGATAAATGGCTGCATATTAATGCTACGTGCCCCCTCTGCAAGTATAACATCTTGAAGA GTAGCAACGTCGGTGAAGAGGAAGTGTGA
Protein sequence (LotjaGi2g1v0432200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASATPTRSSEDILNTAPLLSNSAGSSAEINSDRRFARRQRLMQAARFIRQASGQGMMREPSVMVREAAAEQLEERQSDW AYSKPVVILDLVWNFAFVVASTAVCVLSRTEAPDMPLRLWIAGYALQCVIHMVCVCVEFRRRRRNLHNGVPGVSTSSANL SSASRVGSRSASGYVSFAQFDEERTSVAKHLESANTMFSFIWWIIGFYWVSAGGQDLAQDSPQLYWLCIIFLGFDVVFVV FCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIEQLSRFKFRRIESNEKPTGNAQGPGGGIMTECLADSPIEHVL AEEDAECCICLSSYDDGVELRELPCGHHFHCGCVDKWLHINATCPLCKYNILKSSNVGEEEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 85 | 85 | - | – | |
| PANTHER | 4 | 382 | 379 | 3.7E-196 | – | |
| PANTHER | 4 | 382 | 379 | 3.7E-196 | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 86 | 107 | 22 | - | – | |
| Phobius | 108 | 118 | 11 | - | – | |
| TMHMM | 117 | 139 | 23 | - | – | |
| Phobius | 119 | 139 | 21 | - | – | |
| Phobius | 140 | 193 | 54 | - | – | |
| TMHMM | 193 | 212 | 20 | - | – | |
| Phobius | 194 | 212 | 19 | - | – | |
| Phobius | 213 | 223 | 11 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 224 | 243 | 20 | - | – | |
| Phobius | 244 | 247 | 4 | - | – | |
| TMHMM | 246 | 268 | 23 | - | – | |
| Phobius | 248 | 268 | 21 | - | – | |
| Phobius | 269 | 382 | 114 | - | – | |
| Gene3D | 311 | 376 | 66 | 2.6E-18 | ||
| SUPERFAMILY | 317 | 374 | 58 | 7.07E-19 | – | |
| CDD | 326 | 370 | 45 | 1.87373E-21 | – | |
| Pfam | 326 | 368 | 43 | 2.1E-12 | ||
| ProSiteProfiles | 327 | 368 | 42 | 12.519 | ||
| SMART | 327 | 367 | 41 | 2.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0432200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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