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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0436400 |
Transcript ID | LotjaGi2g1v0436400.5 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|K7LMM4|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93275776..93278348) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGATCTGCAAAATTCGTCGCTCAAGTTCTTCTCCGATCAAGAGCTCTGCTACGCCGATATCGTCCCTCCTGCTCA GGTAATCAACCCTTGCTATATATATACGCTCTTTCTTTCCCTCTCGCTGTGAAACTCCAACGCTTTCATTTTCACAGGTC CGAGCAAGAATTGAAGTTTCAGTGCTCAGTTTCCTCAAAATCCTGAACGCATCGAACCCTTCCATCTCACATTTGCCTCT GGTAACGATTTTTGAATTTGCAAGTTCCATTTTCTCTTTTAATTTTGATCAATTTCAAATTAATTTTTCTCTTGATTGAT TTGCGAATTTCCAGATTCAGAGAAAATCTAGCAACAGTCGAGTGAATCATGGCATGTTGACTGAACTATCATGCGTTTTT CTCTCACATTCTGTGTCTACAAGGTCTTTAACGAGACCTAATGCAGCAAAAGCCTTTGTTAGGGGTAAAGTACTTACAGA TTTGACTACTATTTTCGTTTTTCTTCACAAGAAATTTTAGGTTTCTGAGTTGTGAATTTCTGAATTGTAGTGTGGAAGGT GATGGAGATGTGCTATCAGATTTTGCTTCAGGAAAAGCGTGTTACTCAGAGGGAGCTCTTCTACAAGCTGCTATGTGATT CGCCGCACCTGTTTCCTTCTCAAACCGATGTAAACAGGACAATCCAAGGTTCTCTCTCGCGCTTAATGTGAATTTTGATG TCTTGGTTCTCTGAATGGGAATATCAATTTGTATGAAACAGATCTTGGAGCTTTGCTTCGGTGCAGTCGATACAGTCTTG GAATCATGGCGTCTAGTCGAGGACTCATAGCTGGCCGCCTGATTTTGCAGGTACCTCATCAAACCTTCATTCAAGGATAT GTATGTTAAAAATGCACTTTATCGGATTTGAGATAGATGATTATAGTATTCTTGTATATGAAGTGGTGAAATGTTTTGAA TTTTGATGAATGTTGCAAACATAAGCATTAATCACTTTCAGTTTCCGAATTTTCATGGATTAGGAACCAGGAAAAGAGGC TGTGGATTGCACTGTGTGTGGATCTTCTGGACATGTAATTTCTGGTGACTTGGATTTGTTAGGGAGCTTGATTTTAAATT CAGATGCTCGGTACATTATAATTGTGGAAAAGGTGAGTTTGTTTAGTGGTAATTTGGCTTCTTCAAATTCCTAATTTTAC TGACCTTACAATGTGCTACTGTGAATTGTGAAACTGTCCATAGTTTCCCAATATAGAGAGATACCTTTTGATACTGTGAC AATTAGTTCTGTTTAGCACGCAATATTTCAGCGGCTCACTGAGGATCGGTTTTTTCATCAAATTCCAAGCATTCTTATCA CGGCTAAAGGTTATCCAGATATGGCCACAAGGTACTGTGCACACTTGCTGGCTAGATAATTCCATAGCTTTGAAGGGATG CTTCTAGATGTTCTGTTTTTTTCAAACTTGACTTGACAATATCATATCATATATGGCAATGGCAGTTATAAGTTTTGCTG ATGAGTGCTTGAATGTCAATTTTTTTATATTTAAGCTCAGATTTCTTCTTCATCGAATTAGTCGAGCTTTTCCGGACTTG CCAATTTTAGCTTTGGTGGATTGGTATGATTGGTTGCCTTTGTGCTGAAATACAATCTTTCTCTTTAATCTTTTAGAAAA AAGAAGACATTCTACTTCTTCCTTTTTGTTAACAAAGTTATTGTTAATTTGTATCTCCTTAACTCCTTTCTCACATTAAA ACTTTTTACAGGAATCCAGCAGGATTAGCTATTCTATGTACCTTCAAATTTGGAAGTATAGGAATGGGCCTAGAGGCATA TAGATACGGTAAATTTATAATCTCATTATACCACAAACCATTCAAGCTCTAATATGTTGGAATGAAACTTGAGAAATGAT TTATTTGCATTATCTAGCTTGCAATGTCAAGTGGTTAGGACTGCGGAGGCATGATGTACCCCTGCTACCTGATGAATCCC TTGTTCCATTGAAGCCAAAGGATCTGCAAATTGCTGAAAGCTTGATGTCCTCAGGGATCTTAGAGGTAAACTACGCAGAA GCTCTGAACACACACACAGCCCTACATTTACTTGCCTATACTGGAGTCCTGATTAGTGATATTTGCTCACCACTTTCAGT TACATCATTTTTATGCTGCTTTAGTTCTTGTATGACGCATTTTGGCACAGATAGCTTTTGTGATTTTGTACCTTTTGGTA GATTTCTACATGAGTTTTGCATTCTCAGATGCTTATGCCAGCAATTATTTTGCACAAGAGTTGTACATGTTTACACAGGT GCTGCATAAGAATCAATCTGCATAAGAATTATTTTAATATTCAAAAAGCAATGTGCATCATACAATTCAGCTGAAGTGTG TTTTGACTGTTTTCCATCAACCAAATGGTGTTTGACAGGAGAATTACAAGGAAGAGGTTGCCTTAATGGTTCAAAGTGGA AGAAGAGCTGAAATTGAGGCCCTGTACTTTCATGGATACGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTC AGATTATATATAA
CDS sequence (LotjaGi2g1v0436400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCTAGTCGAGGACTCATAGCTGGCCGCCTGATTTTGCAGGAACCAGGAAAAGAGGCTGTGGATTGCACTGTGTG TGGATCTTCTGGACATGTAATTTCTGGTGACTTGGATTTGTTAGGGAGCTTGATTTTAAATTCAGATGCTCGGTACATTA TAATTGTGGAAAAGCACGCAATATTTCAGCGGCTCACTGAGGATCGGTTTTTTCATCAAATTCCAAGCATTCTTATCACG GCTAAAGGTTATCCAGATATGGCCACAAGATTTCTTCTTCATCGAATTAGTCGAGCTTTTCCGGACTTGCCAATTTTAGC TTTGGTGGATTGGAATCCAGCAGGATTAGCTATTCTATGTACCTTCAAATTTGGAAGTATAGGAATGGGCCTAGAGGCAT ATAGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGAGGCATGATGTACCCCTGCTACCTGATGAATCCCTTGTTCCA TTGAAGCCAAAGGATCTGCAAATTGCTGAAAGCTTGATGTCCTCAGGGATCTTAGAGGAGAATTACAAGGAAGAGGTTGC CTTAATGGTTCAAAGTGGAAGAAGAGCTGAAATTGAGGCCCTGTACTTTCATGGATACGATTATTTGGGGAAGTACATAG CTAAAAAAATTGTACAGTCAGATTATATATAA
Protein sequence (LotjaGi2g1v0436400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSRGLIAGRLILQEPGKEAVDCTVCGSSGHVISGDLDLLGSLILNSDARYIIIVEKHAIFQRLTEDRFFHQIPSILIT AKGYPDMATRFLLHRISRAFPDLPILALVDWNPAGLAILCTFKFGSIGMGLEAYRYACNVKWLGLRRHDVPLLPDESLVP LKPKDLQIAESLMSSGILEENYKEEVALMVQSGRRAEIEALYFHGYDYLGKYIAKKIVQSDYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 221 | 221 | 1.8E-89 | – | |
PANTHER | 1 | 221 | 221 | 1.8E-89 | ||
SUPERFAMILY | 2 | 223 | 222 | 1.44E-59 | ||
Gene3D | 4 | 223 | 220 | 1.8E-61 | – | |
CDD | 51 | 208 | 158 | 5.91849E-60 | ||
PRINTS | 53 | 70 | 18 | 3.1E-20 | ||
PRINTS | 77 | 98 | 22 | 3.1E-20 | ||
PRINTS | 110 | 126 | 17 | 3.1E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | DNA catabolic process, endonucleolytic | The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
Molecular function | Endodeoxyribonuclease activity, producing 3'-phosphomonoesters | Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acids by creating internal breaks to yield 3'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0436400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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