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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0459900 |
| Transcript ID | LotjaGi2g1v0459900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dual-specificity RNA methyltransferase RlmN; TAIR: AT3G19630.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2; TrEMBL-Plants: tr|I3T8H2|I3T8H2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0459900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95357089..95359342) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAATGAGAAGGCAAAGAACCTAGCAAAGGAAAGGAGCAATCAGTAGCCGCGAAGCAGGAAGAAGAAGAGGTAGAAT GGGAATCCGATCGATATTCGACGGCGGTGAGATGAGAACGGAATTCGAGAAAATCGGTATCGACTCGAAGTTCATTCCAA TTATTTGGAAGCATCTGCATCTGCATCTGAATCTGAATCTCAATCTCAATCTCAACGGTGAAGGTGAATGGGAACGCCAT GTCCCTTCTCTGCCTTCTTCTGCGTACCAATTCCTTCGTTCCAACTTCCCAAACCCTCTCTCTTCCTCTCTCCACTCTGT TTTCCACTCCGCTGATAATCTCACCACCAAGCTCCTCATCAAGCTCCATGTATGTACTCTCTTATCTTATACACTCTCTC TTTTTTATGCAGCTTTATTTTACAGTTTCCCTCATGGGATTGATTTATTTATTTATTTTACATTGTCGTCAGAATGGAGC TTTTGTGGAGGCTGTGATCATGAGGTATGACACACGTTTGGGGAAATATGGTGGTAAACCCCGTCCTGGTGGTCTAAGAG CAACTTTGTGTATATCATCTCAGGTTGGATGTAAGATGGGTTGCAAGTTCTGTGCAACTGGAAGTATGGGATTCAAAAAT AACTTATCCTCAGGAGAAATTGTTGAACAGTTGGTTCATGCCTCTACTTTTGCACAAATTCGTAATGTTGTTTTCATGGG AATGGGAGAACCTCTTAACAACTATTCTGCTGTTGTACAAGCTGTTCGAATCATGACTGGATCCCCTTTTCAATTGTCAT TCAAAAGGATTACCATCTCAACAGTCGGCATCATTCATTCTATCAAGAGGCTTCATAATGATCTGCCTGGTTTGAACTTG GCAGTCTCACTGCATGCACCAGCCCAAGACATTCGTTGCCAGATAATGCCCGCTGCTCGTGCTTTCCCTTTGGAAAAACT TATGGATTCTCTCCAAGAATATCAAACCAAAAGGTCACTATTCTGCATTATCATGTAAACTTCACTTCTCTAGCATTGTG AACAATGTCAGTGATTTTGGACTCATTGTTATTTACAGTCTGCACAAGATATTAATTGAATACATAATGCTTGATGGGGT GAATGATGAAGAGCAGCATGCCCACCAATTAGGAAAACTGCTACAGACATTTCAAGTGGTAAACACCCAAATTTTACTTC TGAAATCTGATTTTTAGTTAATTCTCTGAATTGCGTTTCTAGATTTCCAAAATGCTTGTGTGCTCTGCCACTATGATTCC CATGGCATACTTTTCTAAAATGTAGGCAGTGATGATGAATGGTGGTGTTTCTCAAGAATTCATGAATTCTAATGTGACAT TCACATTTTCAAAAATAAGAGTGAAATTTATGTAGAGGACTTGAGATTATAGAACTCGTTTAATAGTATGAGCTGATTTT AGGCAAGTGGTTCTCGATATTGTTAGAAGTCATACTTTTTCCAGGAGTCAATAGTAAGTTTGGAGCATTTGAGTTGTACA TTTCTTCACATTACCTAGTCATATCTTGCAATTTGTTAATTGCTTTGAGTCTTTTGCATTCTCTTTCTGTTGCATTAAGA ATTCAACCATTTGCAGGTAGTGAACTTGATACCCTTCAACTCTATTGGCATCTTGAGTGAATTCAAACCTTCGAGTGAGC AGAAAGTCTCAAAATTTCAGAAAATTCTTAGAGGTAGCTATAATATTCGAACAACAGTTCGGAAGCAGATGGGTGAGGAC ATAAGTGGTGCATGTGGACAATTAGTTGTTAACTTACCTGACAAGTCTCTTGGAAATCAAGATCCCCTAACGGACATAGA AGACCTTGTTATTTGATATCAATATAGGTTCAATTTAATTCTTAGGCTGTTATTTTCGATTTGCTTCCTTCTTCATGTAT TGTATTGTGTTAAGTTTAAATCTATAGAAACTAGTATCAGAATTCAGAAGTGAAGGTGCACTGGGTGAACCGGTGAAGCC CCACGAAATTTCTTCCTTTGACTGTGCTATGCTTTTCTGTCCTTTAAAATTTTTATACTGCCATTAACATACACAATCCC TGTTATTATACTTAAAGAGATGAATGGATATGCATCATAGGACCAAGCGGTTATATCTCCTTTTAATTTTAATGTGGAAG AAATCAATTGGATACACATGTAAAAAAAAAGTTTACACTAACCGTGTATTAACTATTTTTCCATCTAAACTAAATTTTCA TTTTCTATCCAAAT
CDS sequence (LotjaGi2g1v0459900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATCCGATCGATATTCGACGGCGGTGAGATGAGAACGGAATTCGAGAAAATCGGTATCGACTCGAAGTTCATTCC AATTATTTGGAAGCATCTGCATCTGCATCTGAATCTGAATCTCAATCTCAATCTCAACGGTGAAGGTGAATGGGAACGCC ATGTCCCTTCTCTGCCTTCTTCTGCGTACCAATTCCTTCGTTCCAACTTCCCAAACCCTCTCTCTTCCTCTCTCCACTCT GTTTTCCACTCCGCTGATAATCTCACCACCAAGCTCCTCATCAAGCTCCATAATGGAGCTTTTGTGGAGGCTGTGATCAT GAGGTATGACACACGTTTGGGGAAATATGGTGGTAAACCCCGTCCTGGTGGTCTAAGAGCAACTTTGTGTATATCATCTC AGGTTGGATGTAAGATGGGTTGCAAGTTCTGTGCAACTGGAAGTATGGGATTCAAAAATAACTTATCCTCAGGAGAAATT GTTGAACAGTTGGTTCATGCCTCTACTTTTGCACAAATTCGTAATGTTGTTTTCATGGGAATGGGAGAACCTCTTAACAA CTATTCTGCTGTTGTACAAGCTGTTCGAATCATGACTGGATCCCCTTTTCAATTGTCATTCAAAAGGATTACCATCTCAA CAGTCGGCATCATTCATTCTATCAAGAGGCTTCATAATGATCTGCCTGGTTTGAACTTGGCAGTCTCACTGCATGCACCA GCCCAAGACATTCGTTGCCAGATAATGCCCGCTGCTCGTGCTTTCCCTTTGGAAAAACTTATGGATTCTCTCCAAGAATA TCAAACCAAAAGTCTGCACAAGATATTAATTGAATACATAATGCTTGATGGGGTGAATGATGAAGAGCAGCATGCCCACC AATTAGGAAAACTGCTACAGACATTTCAAGTGGTAGTGAACTTGATACCCTTCAACTCTATTGGCATCTTGAGTGAATTC AAACCTTCGAGTGAGCAGAAAGTCTCAAAATTTCAGAAAATTCTTAGAGGTAGCTATAATATTCGAACAACAGTTCGGAA GCAGATGGGTGAGGACATAAGTGGTGCATGTGGACAATTAGTTGTTAACTTACCTGACAAGTCTCTTGGAAATCAAGATC CCCTAACGGACATAGAAGACCTTGTTATTTGA
Protein sequence (LotjaGi2g1v0459900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIRSIFDGGEMRTEFEKIGIDSKFIPIIWKHLHLHLNLNLNLNLNGEGEWERHVPSLPSSAYQFLRSNFPNPLSSSLHS VFHSADNLTTKLLIKLHNGAFVEAVIMRYDTRLGKYGGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEI VEQLVHASTFAQIRNVVFMGMGEPLNNYSAVVQAVRIMTGSPFQLSFKRITISTVGIIHSIKRLHNDLPGLNLAVSLHAP AQDIRCQIMPAARAFPLEKLMDSLQEYQTKSLHKILIEYIMLDGVNDEEQHAHQLGKLLQTFQVVVNLIPFNSIGILSEF KPSSEQKVSKFQKILRGSYNIRTTVRKQMGEDISGACGQLVVNLPDKSLGNQDPLTDIEDLVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 381 | 379 | 3.4E-166 | ||
| PANTHER | 3 | 381 | 379 | 3.4E-166 | – | |
| PIRSF | 46 | 375 | 330 | 1.4E-107 | ||
| Gene3D | 77 | 351 | 275 | 1.4E-91 | ||
| SFLD | 81 | 364 | 284 | 0.0 | ||
| SFLD | 81 | 364 | 284 | 0.0 | – | |
| SUPERFAMILY | 128 | 289 | 162 | 6.67E-9 | – | |
| Pfam | 132 | 290 | 159 | 4.5E-14 | ||
| CDD | 136 | 337 | 202 | 1.52869E-8 | – | |
| Pfam | 136 | 221 | 86 | 2.1E-5 | – | |
| Coils | 383 | 383 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | RNA methyltransferase activity | Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. |
Expression pattern of LotjaGi2g1v0459900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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