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LotjaGi3g1v0025600.3

Overview

Field Value
Gene ID LotjaGi3g1v0025600
Transcript ID LotjaGi3g1v0025600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Beta-galactosidase; TAIR: AT3G13750.1 beta galactosidase 1; Swiss-Prot: sp|Q9SCW1|BGAL1_ARATH Beta-galactosidase 1; TrEMBL-Plants: tr|A2Q448|A2Q448_MEDTR Beta-galactosidase; Found in the gene: LotjaGi3g1v0025600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:2787697..2793675) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGCTTCTTCAAGCAGCTCATGGCAATGCAGAATGTACTTCTGCTGCTACTCCTTCTGGCATGTTCTTTGATAGGTTC TGCTACAGCCTCTGTGTCCTATGACTCCAAAGCTATCACCATTAATGGCCAGAGAAGAATACTCATTTCTGGATCCATTC ACTATCCAAGAAGCACCCCTGAGGTATTTTTACTCTGGAATGTGCTTCAGGGTCTTGATATTTTCTTGTTTTTATCAAAT GGGTACCTTAAAGTTCCTTCGTTTATCTGTTTTTAGGTGACTTGTATTTTTCTGTTTTTATCAAATGGGTACCTTGAAGT TCCTTCCTTTTTCTGTTTTTGTGTGACTTGCACTCCTAACTTGTAGGTTTCTGTGGTTGTTTGTTTCTTCAGATGTGGCC AGATCTTATCCAGAAGGCCAAGGAAGGAGGTTTGGATGTGATTCAGACCTATGTTTTCTGGAATGGGCATGAACCTTCAC CTGGCCAAGTAACTAAAACAAAATAATATGCCATCTAGTTTTGCTTGTTTTCACTGTTTGAGTTATTGGTACGAAATAAT CAAATGTTCTTGTTTTCTTGATTTATGCAGTATTATTTTGAAGGGAACTATGATCTGGTGAAGTTCATAAAGTTGGTGCA GCAAGCAGGCCTCTATGTTAATCTAAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGTAGTGAAAGTGTTCAT ATCCTCTTGATATTTGCAATTTTTTTTTTGTTAATGTCAAAAGTAGAAATATCTTAACAGCTTTGCCTGATTTGTTTTCA GGGGCTTCCCTGTTTGGCTTAAGTACATTCCAGGTATTAGCTTCAGAACAGACAATGGCCCATTTAAGGTAAGATTTGAG TTATTCTTATACCTCAAGAATGGTTAAAAAGTATCAATTTTTCCTTTTTCATTGATGTGACGTGAGAGCCTCTAATTACT TCTGATTTTTACATTGCCATGATGAAGTTTCAAATGCAAAAATTTACCGAGAAGATTGTCGATATGATGAAAGCAGAGAG GTTATATGAGTCTCAGGGAGGTCCAATAATTCTTTCCCAGGTAGACTAATATGCTGCTAGCTTTCTACTCAATTCCAGGG ACTTGCTTTATAATTATATTATCTTGTGGAGTTTATGCATTGACTAGAATGGAGATGTATTCTACTTGTACAGATTGAAA ATGAATATGGACCTGAGGAGTATGAAATTGGTGCTGCTGGTAAAACCTATACTAAGTGGGCAGCAGATATGGCTCTAGGA CTTGGTACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTGTAAGTTCAGCTGAAGTGTGTGT TTTTAAGGAAACATTTTACCTTGTGTAGAACACGTTATAGCTCTTTTTTTTTTCTTTTTTTGTGAAAGAGGCTTTTATGA GACAAGAGCTTGATGATATGATAGAATTTGAAATTCTTTATTTTGTGTTAAAAACTTACCCTGGAAAAATACCTTGTATT TTTTAAATTCTTTCTTTTGATTCCTAGACAATGCCCTTCACACTAAATTATTTAAAATCCTCTCAAATACATTTCCCCAA TAAAATCATCTACCCAAACAGTCCTTAATTATTTTGTTCTTGACACTGTTTATACCTCCAAGGATTTCAGCTACTAATTT CTCAAAACATTTTACAGATTAACACCTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAACAAGGATTACAAACCAAAG ATGTGGACAGAAGCTTGGACTGGCTGGTATTGATGCTTTCTTTCATTCCTTTATTTATTTATTGTTAAACATGCAAACAA GAGATAACACCTGACTACTAACTGCCTCTATTCCTCTTTTATGCTTTGAAGGTATACTGAGTTTGGAGGTCCCGTTCCTT ATCGACCTGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTACATGGTA ATTTCATTATTTATTGATTTCAATGTGTAATTGTGTAGGCTCACCTTTCCTAAATATTCAACTGTGTCCCTTTATTTTGT TCATTTCAGTACCATGGGGGAACAAATTTTGGTCGAACTGCCGGTGGTCCCTTCATCGCTACAAGCTATGATTATGATGC ACCTCTTGATGAATATGGTAAGATGCCATTACTTGATATGGCCAACAAGTACTGATACTATGATGTATTTTTTCCCCACT TTTTATGTAGAACCTGCTGGGAATAATTCTCAAAATATGATTGTGCTGCCTCTATGTTCCTTAGTTCCGTGAGGCATGCT ATATTGGAACATCGCTGTTGTTCCTATAAGTTAACAAAATAAAATCTAAAGCAATTTGCATCTGGTTTTTTATGTTGAGT CCTGTGAATGATGGATCCTTTGCCTTAGATCTGCTGCATTCATTTATATGAAGAACTTCACATATTTGATGTACATTTAT ACACCTGACTAAAAGTAGAGCACTTATTTTTGTTTTTTCCTTCTGTATAGGATTGCTCAGGCAACCAAAGTGGGGTCATC TGAAGGATTTACACAGAGCAATAAAACTTTCTGAACCTGCATTAGTATCAGGAGATCCGACTGTAACACGGATTGGAAAC TATCAAGAGGTATAATGTGACACAATTATGTGAAAAGTTATCTAACCTTTATAAAATGCTTTATAACCAAACTGAGTTTC TATCTTTTATCATTAATGTTCAGGCTCATGTCTTCAAATCAAACTCGGGAGCCTGTGCTGCGTTTCTAGCAAACTATAAC CCAAAATCTTATGCAACAGTGGCATTTGGGAATATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCCGACTG CAAGAACACCGTTTATAACACTGCAAGGGTAAAAAAATTGAGCGAATTTTAATTTCGAACGACTTGCTGGGTTGGTTATC AAGAGCTTAAATATGTGGTTGAGTGGATTTAATAACTTTTATGCATGCAGTTTTAGCTCTATCTGCAAGATTGACTTTTT TTCTTTCATGAAAATAGACATACAACAAGAAAAGAATGATAACTATTGTAGTGTTTTCTTATTGCTAAATCTTCTTTTGC AATGAAGAGAAAGGTTTTTTTCTTGTGAATTTTCGTGAGCCGAATTTCAGTGAGATTAAAATTCCTAAATCTTTGTACAG GTTGGTTCCCAGAGAGCCCAGATGAAGATGACCAATGTTCCTATTCATGGTGGACTCTCTTGGCAAGGGTTCACTGAAGA AACAGCCTCGACTGATGACAGTTCCTTCACTGTGACTGGCCTATTAGAGCAGTTAAATACAACAAGAGATTTATCCGACT ACTTGTGGTACTCCACGGAGTGAGTGACATAAAACATTGCACTTCACTTCCCTTTTTCCCAATTTTATTCTGTTTTTTCA TGTCTTATAGTTGTGTTGCTCCTTTTTTGCTAGTGTCGTGATTGACCCCAATGAAGAATTTTTGAGGAATGGAAAGAATC CTGTTCTTACAGTGTTATCTGCTGGGCATGCTATGCATGTTTTTATCAATGGCCAGCTATCAGGTGAGGAGCATAATGCT GGTTTACATAATTTCAGAAACACTTGACTCACCTACTTTAGAACAATCTCAGTGCTGGCTTTATTCCAAATCTTCAACTT GTATATAAGTACTTTTTCATTGTAAGATCCAAGAGGAAGAAGGGTCATCCCTAAAACTAGTTGATGTATGCTTTTGAGGA TTCAATACATTAGAATGTTGCATGGAATCAATATATTATCTAAGCTCTGGTTGATACATCATACATTGAGCCTATTATAC TCCTTTTGATCAGGAACTCTATACGGAAGCTTAGAATTTCCCAAACTGACATTTAGCGAGAGTGTGATGCTCAGACCTGG TGTTAACAAAATCTCTCTTTTAAGCGTTGCAGTTGGACTCCCGGTTTGTTCTCTCTCTCTCTCTCACCCACAAGCGTGCG CACCACACACACTACATTGAAAATAGATTGTAGATGCACACCTGCATTTTCACACATGGCTAATTTTTCAGAATCACAAA CTCTATTCCAGTATGATCATGACTATATTACTCACTTGATTTTTCAGAATGTTGGCCCTCATTTTGAGACATGGAATGCT GGTGTTCTTGGTCCAATTACATTAAACGGTCTCAATGAGGGGAGAAGGGACTTGACTTGGCAGAAATGGTCTTACAAGGT TTTTCCTTGAACATTCCCCATATCTTCTCTTTGTTAATGCTTCATTTTTCTCTAAATTCAAATTCACATTTTATTTAGGT TGGTCTTAAAGGTGAAACCCTGAGTCTTCATTCTCTCGGTGGAAGTTCGTCAGTGGAGTGGGTTCAGGGGTCTTTAATTG TTCAGAGGCAGCAATTGACTTGGTTCAAAGTGAGTATATCACAAAGCCTCTATAATCTTCTAAAATTAGAGAAACCTATG CAGACTTTGCTAATTTTTCTGGACTGTTCAAGATAGTACTCTTTCATTACTATTGTTCATTTGCTATAAATAAGTTTTAG TGCTTTGTCTTTGTGTACCTCATTAGATCACTTCATATTGATATTAGTATCAGATTGTTCAGTCTCTATATTCTCTTTCT TTCTCCAATGTATACCCTATAACTTAAACACACTTCAATGTCTGTTTTAATATCATTTCAGACTACTTTCGATGCCCCGG ATGGAGTTGCACCATTGGCTTTAGACATGGGTAGCATGGGCAAGGGTCAAGTGTGGTTAAATGGACAGAGTCTTGGCCGC TACTGGCCTGCTTATAAAGCATCTGGTACCTGTAATAACTGTGACTATGCTGGAACGTACAATGAGAATAAATGCAGAAG TAACTGCGGCGAGGCTTCCCAAAGATGGTGAGTGAGAAATATATAGCTTAACCTGAAGTTGTCTAATGCTGATGATAAAC CTTTGACAAACTAACTACTGGTTGGTAATTTCAGGTATCATGTTCCTCATTCATGGCTGAAGCCAACTGGGAATTTATTG GTTGTGTTTGAAGAATTGGGTGGAGATCCCAATGGGATCGTTTTGGTTAGACGCGATATAGATAGTGTGTATGCTGATAT TTATGAATGGCAGCCAAATGTTATTAGTTATCAGGTGCAAGCTTCTGGCAAATCTAGCAAACCAGTGAGACCAAAAGCAC ATTTATCATGTGGCCCTGGACAAAAAATCTCATCAATCAAATTTGCTAGTTTTGGTACTCCGGTTGGGTCTTGTGGAAAC TTCCAAGAAGGAAGCTGCCATGCTCACAAGTCTTATGATGCCTTAAAAAGGGTATTGCCTTCTGCACTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTAATTGGATGGTTACCCTTGAGTGTCACGAACCAACTATCCCAAAAGCTTTAGGG TGAAGACACGTGAATAGGTTTGTATTATATTTCTAACACACCTCACACAAGAGCCAATTGGGCTTGAAGTATGGACAATA TATAGACTTACCTACTTTGTGCTGAAATTAATCTTTTCTATGTGAATATTAGAAGTAACAAGGATCGAACTCTTGACCAC TTGGTCACTTAGGCTCTTTGATACCATGTCATGAACCAACTATCCCAAAAGCTCAAAGCTATTGAGTGTAGACACTTGAA TAGTTTTGTTATATTTCTAAGAGGGAGCTATAGCTAAATACAGTTGTTAGTAAAACATGATCTGTTTTAGTTCTAAAGCC CTTTACTAAACAAAATGTTAGGTTCAATTCTGCTAGTCAAATTATCCATTTTATGCTTGTGGTCACTTTTACTTGGTTCA TTCTTGACTAGTGACTTTATTGTTGCAGAATTGTGTTGGACAGAACTTTTGCAAAGTAACAGTGTCGCCTGATAATTTCG GAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAGGCCATTTGTTCCTGA 

CDS sequence (LotjaGi3g1v0025600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCTTCTTCAAGCAGCTCATGGCAATGCAGAATGTACTTCTGCTGCTACTCCTTCTGGCATGTTCTTTGATAGGTTC TGCTACAGCCTCTGTGTCCTATGACTCCAAAGCTATCACCATTAATGGCCAGAGAAGAATACTCATTTCTGGATCCATTC ACTATCCAAGAAGCACCCCTGAGATGTGGCCAGATCTTATCCAGAAGGCCAAGGAAGGAGGTTTGGATGTGATTCAGACC TATGTTTTCTGGAATGGGCATGAACCTTCACCTGGCCAATATTATTTTGAAGGGAACTATGATCTGGTGAAGTTCATAAA GTTGGTGCAGCAAGCAGGCCTCTATGTTAATCTAAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGCTTCC CTGTTTGGCTTAAGTACATTCCAGGTATTAGCTTCAGAACAGACAATGGCCCATTTAAGTTTCAAATGCAAAAATTTACC GAGAAGATTGTCGATATGATGAAAGCAGAGAGGTTATATGAGTCTCAGGGAGGTCCAATAATTCTTTCCCAGATTGAAAA TGAATATGGACCTGAGGAGTATGAAATTGGTGCTGCTGGTAAAACCTATACTAAGTGGGCAGCAGATATGGCTCTAGGAC TTGGTACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAACACCTGCAATGGCTTCTAT TGTGATTATTTCTCTCCAAACAAGGATTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTATACTGAGTTTGG AGGTCCCGTTCCTTATCGACCTGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCA ATTATTACATGTACCATGGGGGAACAAATTTTGGTCGAACTGCCGGTGGTCCCTTCATCGCTACAAGCTATGATTATGAT GCACCTCTTGATGAATATGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTTTC TGAACCTGCATTAGTATCAGGAGATCCGACTGTAACACGGATTGGAAACTATCAAGAGGCTCATGTCTTCAAATCAAACT CGGGAGCCTGTGCTGCGTTTCTAGCAAACTATAACCCAAAATCTTATGCAACAGTGGCATTTGGGAATATGCATTACAAC TTGCCTCCTTGGTCTATAAGCATTCTTCCCGACTGCAAGAACACCGTTTATAACACTGCAAGGGTTGGTTCCCAGAGAGC CCAGATGAAGATGACCAATGTTCCTATTCATGGTGGACTCTCTTGGCAAGGGTTCACTGAAGAAACAGCCTCGACTGATG ACAGTTCCTTCACTGTGACTGGCCTATTAGAGCAGTTAAATACAACAAGAGATTTATCCGACTACTTGTGGTACTCCACG GATGTCGTGATTGACCCCAATGAAGAATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTGTTATCTGCTGGGCATGC TATGCATGTTTTTATCAATGGCCAGCTATCAGGTGAGGAGCATAATGCTGGAACTCTATACGGAAGCTTAGAATTTCCCA AACTGACATTTAGCGAGAGTGTGATGCTCAGACCTGGTGTTAACAAAATCTCTCTTTTAAGCGTTGCAGTTGGACTCCCG AATGTTGGCCCTCATTTTGAGACATGGAATGCTGGTGTTCTTGGTCCAATTACATTAAACGGTCTCAATGAGGGGAGAAG GGACTTGACTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCCTGAGTCTTCATTCTCTCGGTGGAAGTT CGTCAGTGGAGTGGGTTCAGGGGTCTTTAATTGTTCAGAGGCAGCAATTGACTTGGTTCAAAACTACTTTCGATGCCCCG GATGGAGTTGCACCATTGGCTTTAGACATGGGTAGCATGGGCAAGGGTCAAGTGTGGTTAAATGGACAGAGTCTTGGCCG CTACTGGCCTGCTTATAAAGCATCTGGTACCTGTAATAACTGTGACTATGCTGGAACGTACAATGAGAATAAATGCAGAA GTAACTGCGGCGAGGCTTCCCAAAGATGGTATCATGTTCCTCATTCATGGCTGAAGCCAACTGGGAATTTATTGGTTGTG TTTGAAGAATTGGGTGGAGATCCCAATGGGATCGTTTTGGTTAGACGCGATATAGATAGTGTGTATGCTGATATTTATGA ATGGCAGCCAAATGTTATTAGTTATCAGGTGCAAGCTTCTGGCAAATCTAGCAAACCAGTGAGACCAAAAGCACATTTAT CATGTGGCCCTGGACAAAAAATCTCATCAATCAAATTTGCTAGTTTTGGTACTCCGGTTGGGTCTTGTGGAAACTTCCAA GAAGGAAGCTGCCATGCTCACAAGTCTTATGATGCCTTAAAAAGGAATTGTGTTGGACAGAACTTTTGCAAAGTAACAGT GTCGCCTGATAATTTCGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAGGCCATTTGTTCCTGA 

Protein sequence (LotjaGi3g1v0025600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSFFKQLMAMQNVLLLLLLLACSLIGSATASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQT YVFWNGHEPSPGQYYFEGNYDLVKFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFT EKIVDMMKAERLYESQGGPIILSQIENEYGPEEYEIGAAGKTYTKWAADMALGLGTGVPWIMCKQDDAPDPIINTCNGFY CDYFSPNKDYKPKMWTEAWTGWYTEFGGPVPYRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYD APLDEYGLLRQPKWGHLKDLHRAIKLSEPALVSGDPTVTRIGNYQEAHVFKSNSGACAAFLANYNPKSYATVAFGNMHYN LPPWSISILPDCKNTVYNTARVGSQRAQMKMTNVPIHGGLSWQGFTEETASTDDSSFTVTGLLEQLNTTRDLSDYLWYST DVVIDPNEEFLRNGKNPVLTVLSAGHAMHVFINGQLSGEEHNAGTLYGSLEFPKLTFSESVMLRPGVNKISLLSVAVGLP NVGPHFETWNAGVLGPITLNGLNEGRRDLTWQKWSYKVGLKGETLSLHSLGGSSSVEWVQGSLIVQRQQLTWFKTTFDAP DGVAPLALDMGSMGKGQVWLNGQSLGRYWPAYKASGTCNNCDYAGTYNENKCRSNCGEASQRWYHVPHSWLKPTGNLLVV FEELGGDPNGIVLVRRDIDSVYADIYEWQPNVISYQVQASGKSSKPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGNFQ EGSCHAHKSYDALKRNCVGQNFCKVTVSPDNFGGDPCPNVMKKLSVEAICS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 30 30 -
SignalP_GRAM_POSITIVE 1 30 30 -
ProSiteProfiles 1 22 22 5.0
SignalP_EUK 1 30 30 -
Phobius 1 12 12 -
SignalP_GRAM_NEGATIVE 1 30 30 -
TMHMM 12 34 23 -
Phobius 13 25 13 -
PANTHER 13 850 838 0.0
PANTHER 13 850 838 0.0
Phobius 26 30 5 -
Gene3D 28 348 321 1.1E-112
Phobius 31 851 821 -
SUPERFAMILY 32 347 316 5.07E-107
Pfam 39 343 305 1.9E-118
PRINTS 42 59 18 6.7E-86
PRINTS 63 81 19 6.7E-86
PRINTS 118 137 20 6.7E-86
PRINTS 175 190 16 6.7E-86
ProSitePatterns 177 189 13 -
PRINTS 254 269 16 6.7E-86
PRINTS 291 306 16 6.7E-86
PRINTS 311 327 17 6.7E-86
Pfam 351 422 72 3.3E-27
SUPERFAMILY 406 583 178 1.82E-25
SUPERFAMILY 592 755 164 3.89E-28
Gene3D 596 744 149 8.4E-15
PRINTS 628 642 15 6.7E-86
PRINTS 655 671 17 6.7E-86
Gene3D 763 851 89 9.8E-12
ProSiteProfiles 765 851 87 19.249
Pfam 773 850 78 1.5E-20

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Molecular function Carbohydrate binding Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0025600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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