Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0026900.1

Overview

Field Value
Gene ID LotjaGi3g1v0026900
Transcript ID LotjaGi3g1v0026900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 3-hydroxyisobutyrate dehydrogenase, putative; TAIR: AT1G17650.1 glyoxylate reductase 2; Swiss-Prot: sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic; TrEMBL-Plants: tr|G7IUG9|G7IUG9_MEDTR Glyoxylate/succinic semialdehyde reductase; Found in the gene: LotjaGi3g1v0026900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:2933204..2937785) extracted from Lotus japonicus Gifu genome v1.2.

GTTTGTGGACTCGCTATGGATGTTGTATTTATCTACTTATCAATCTTAGTTTATCCAACACAAGCAGGAACACGCACCTC ACCTAGGAGAATCCAATAAGGAAGAAAAGCAATCTTCCTGGTTCTGGTGTTGAGACGAAACAGTAGGAAGGAAGTGACGA TGAGAAGCATGGTGAATTGCCATCCCTTTGTCCTTCACCGTCTTCCCCATCACCACTTGTTCAACCACTTTCGACCATTT CGCTTCTCTATGTCTGCTCAGCTTTCCAATGTTTCGCCTCAGTCTCAAGGTACCTTATCTTCATTCACTGTTTTATGGTG TGGCACTCATGGATTATATTATAACATTGACTATTTATTGTGTTTGAGAGTAGCTAGAAATTGGCATAAATATTTGCTCA CCTTATGTTAAGGAAATTCATCAGAAGAAACATTTAGTTAGTTAGTTAGTTAGTTGGAATTTGGACATTTAGAGACACTG TTAGTTAGTTAGTTAGCTAGTTAGTTAAGTAGTTGGAATTGGGAAATGAGAACTCTACTACCTGCAATGCAAGAAAGCAA AAAAACTTTATAACATGTTTGGATCCGTTTCTCTTTTCTCAGAATCAATTCTGACACTCAGATGCTACTCACGGAAACTG CTCCCCATAATGATTGATTTTGGCTTTAGAATCAAATATAGAAGGATTTCTAAACATGCACATACTTGTTCTCTATCCCA CTCAACTGCCTTGTTCTTTTTTCTCTGCTTTCAGTGATTGAGGCACCCGCACGGGTTGGTTTTTTGGGCATTGGAATCAT GGGCTCCCCCATGGCACAAAATCTCTTAAAAGCTGGGTATGTATGTATCTATGCCTTCCTCATCATATCGCCCTTACCTT GATTTGTATCTATTTGTAAGGAGATAACTTAAAATGTTACTGAATTGAGAGAGCAATGTTAATTCATGTCACACATTTTT CATGCTTGTCTTAGTAGTAAGCGCTTTAAATTCAAGTTTTTTTGTCCATAGATTCCACTCTTGTTTCGGCTGAGTTGTAA TTAATTACTATGCCTTTACCTGTAACTGTAGTTCTCCATGTCCTGATTGATTCTCCTAACTTTTCTTGTTGTAGAATTGA TCTGACTGTTTGGAATAGGACCAAGAGCAAGTGTGATCCTTTAATCAGCTTGGGAGCAAAGTAAGTTTTTGATATTCAGG TTTCCATATTTTTGTGTTTTGAGGACCATGATGGATCTTCACAGGGCGCAGCATTATTATTAAGTAGTTGTGCTTGTGCA TCTGCGCACGATGCATACACTTGAAAACATGGAAGTGTGATACCTACATTTTATAAGACACATCAAGAGAAGAAATAATC TGTAAGTTTTGAAGTGTGTTTGAAATTCTATGATTCTGCAGATATAAATCATCTCCTGAGGAAGTAGCAGCATCTTGTGA TGTCACATTTTCCATGCTTGCAGATCCTCAAAGTGCAGTGAGTATATTTCAGTATAGGTTGAAAAGCTAATAAATTAGTT CTGACTCTGAGCTAGTTATGCTTGTACTGTATCAGATGGATGTTGCTTGTGGGAAGCATGGAGCGGCAAATGGAATGGGT CCAGGAAAAGGGTTCTATATTCAAATTCAAATTTTCAAATTGCTTCCAGGATATTGCTGCAATTTTGACAAGTAACACTA TTTGAAATGGATATTTGACACTTTTGTATGTCAGATATGTGGATGTTTCAACTGTTGATGGGGACACTTCTAAATTGATT AGTGAGCACATAAAATCCACTGGAGCATTATTTTTGGAGGTGAAGTTCTTTATAACTTCCCTATCTATTCTATGTGGCAT GTACAGAGTGCTCTGTAGTTAGGATATGCATCAATCATTGCTTGCTTTAGTCAGATGATTAGATGAATATTGTAAGTTGT GACACCTATGAAGCCATTTCTGTTTACCCACAGGCTCCAGTTTCAGGTTCCAAAAAACCAGCTGAAGATGGCACGTTGAT ATTTCTTACAGCAGGTGAATATTATTCTTCCAAGTACTTATTCACATTAGCAATGGAAAAGAGTTGGTGAAGGATTATTT TCCTTTTTTTACAAGAAGGAAATTTAGCTGGGATGTATCAGAATTGGAATTCCCTTCAATCAGATAAATCTTAAATTCAC ACACAGGGAATTTGAGCCGTTCGAAGGTCGGACGACTCAGATTTTAAGCTTATCTCTTCCGTCCGTTCTTGATGAAACAT GAGATCGGACGGCTCAGATTTCTTAACTGTGTTAGTTTAGGAAGCCCTGGTCCCAATAGTTGCTGAAGATTGTAATTATG AACTGATGAAGACTTTTATACATGTTATACTGTAAAGAATTTTTTTCTATATATCCTCCATTTGTATAATTGGCAGCACA TAGCATTGTGAATATATTCAGACTTTTCTGTGACAAAAGAGTATTGGGCACTAACAGAAACTGAGACAATGTATATGATT TTTCAGGAGACAGAAATCTTTATGAAACAGTTGCTCCTCACTTGGACATCATGGGAAAGGTATATATGTAATGTAGTATT TCATTAAAAAAATCTGATATTTCTTGCAAAGCAAATAATTAGTTCAGACTTCATACCATGTGTTTTGCTTCTATGCAGTC TAAATTTTTCTTGGGTGATGTTGGAAATGGAGCTGCAATGAAACTCGTTGTCAATATGATTATGGGCAGGTCTTTTAAAA TTTGCTTCCTGCTTTTTTGCTGTTATTTGTCATTGTGTGCCGATGATTAAGGTGATATTATTTCTTTCTATATTTCCCGT TCGTTCATAGTATGATGGCATCCTTTTCCGAAGGCTTACTTCTCAGCGAAAAAGTTGGGCTGGATCCAAAAGTACTTGTG GAGGTATTCAGTTATCATCTAGTTCATCAGTTATCATCTAGTACTTGTCTTATGAAACATTTCCCTGGATTGCTCATTGA TTTCATGGATTATTAAACATTCCATATTTCATTTGTTTCTAATTGAGATCTAGGTGATCATCCACGATTGAAAAAAATTC AACATAATTTGTGACTTTTGTAGGTGAAATTTGCTACACAAATTTACATGGATTTTCTGGCTGTTCCATAATTAAAGCCC TATAGGCCTTTTATCTTTCACTTTGGGCTGCTGTAGATTTGGTAGTTGAGAAACATCATTGACTTTTTTCGCTAATGTGA TTCATTAGTCTGCAGAAAATTATTAACTGCATGAGAATGGTGTTAAGTGATACCTTGTCAAAGAGAAATCATAATGCAAA TAAATTTGCAAGAATGCTGGATAGTATGAAGGATATTCACTCAAATTCTTATATTGTTACTTCGGCCTCATTAGTTAAAA TAAATTCCTTACAATTTCGCCCAAAATTTTGGCACAATATAAGGGTACTGACTGCACTTCTGTTTGTTTCCACCCCCACC CTTGTGTGATATCATCTAGTAGAATGTCAACCTTGGATCCCAGGGCTAAGTAGAAGCAACCTCATTTAAAAACACTTGCT TCTGGTAACATACAAGATATTGTGACTTTCTTGAATTTTTTCTTCTTACAAGTTCAAAATGTTTCTAATTTGCTTATAGC TGTCATTATTCACTTTATTTCTATTCCTGGGAGAACTAATTTCCCATAACATGTCTTTCTTTGATATTAGGATTCATATT GTGTTGCTTATAAGGAAGAATGTGTCATGGCTGATGGCTCTCATGAGAAATGAATTAAATATTCTGCAAAATTGAAATTT TGCAGGTAATTTCACAGGGTGCCATTAGTGCTCCAATGTACTCAATGAAAGGCCCATCCATGATACAGTCACTTTACCCA ACTGCATTTCCCTTAAAGCATCAGCAGAAGGTTTGTAAATGAATGAAAATTCCTCTTTGGTAACTCTCATAAGTCAGAAT TAATTCTCACAAAGAATTAATGTTGACAGGATCTAAGACTTGCCCTGGGGTTAGCAGAATCTGTTTCCCAACCTATTCCA ATTGCAGCAGCAGCTAATGAGCTATATAAAGTTGCAAAATCCCATGGCCTTAGTGATCAGGACTTCTCAGCTGTCATTGA AGCATTGAAGTCCAAGTTTCAGCACTCAGAAAACCAGTGACCTTCTTATGAGAGGCAGGTTCACTTGGAAAATAGTAGTG AGCTAGTTTTGAATGCATTTCAGAAATGCAGAACATGCTCCCATGGGTGCAAAAATTTTTGTGAAAATTTATTTTCAACT CATATTTCGTTGAGATGGTCCATCTTTTAGTACATGTTTGATTTCACTATTTGCAGAGATCAAGACACGTTGATTCAGAA ACTAAGACTTGTAGCTTCTAACTAGAAGTGATTCTAAAACATTTCACCGTTAAACCAAACACGTTACCTAAGATCTTCTT GAATAGGATACCTACTTCAAGCAACCTCATATAGACACTCCAAGATTGATTTTCCAAGATTTCTTGTTTTATATACCTAT TTTCATTTGTTAGATTTATCTCTTCATTTTCAGCCTTCTCTTGTCTTTGACAATTTATGGTCTTAATTCTCAGATTCTCA GTAGGATTACGTTCAACCCAAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0026900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAAGCATGGTGAATTGCCATCCCTTTGTCCTTCACCGTCTTCCCCATCACCACTTGTTCAACCACTTTCGACCATT TCGCTTCTCTATGTCTGCTCAGCTTTCCAATGTTTCGCCTCAGTCTCAAGTGATTGAGGCACCCGCACGGGTTGGTTTTT TGGGCATTGGAATCATGGGCTCCCCCATGGCACAAAATCTCTTAAAAGCTGGAATTGATCTGACTGTTTGGAATAGGACC AAGAGCAAGTGTGATCCTTTAATCAGCTTGGGAGCAAAATATAAATCATCTCCTGAGGAAGTAGCAGCATCTTGTGATGT CACATTTTCCATGCTTGCAGATCCTCAAAGTGCAATGGATGTTGCTTGTGGGAAGCATGGAGCGGCAAATGGAATGGGTC CAGGAAAAGGATATGTGGATGTTTCAACTGTTGATGGGGACACTTCTAAATTGATTAGTGAGCACATAAAATCCACTGGA GCATTATTTTTGGAGGCTCCAGTTTCAGGTTCCAAAAAACCAGCTGAAGATGGCACGTTGATATTTCTTACAGCAGGAGA CAGAAATCTTTATGAAACAGTTGCTCCTCACTTGGACATCATGGGAAAGTCTAAATTTTTCTTGGGTGATGTTGGAAATG GAGCTGCAATGAAACTCGTTGTCAATATGATTATGGGCAGTATGATGGCATCCTTTTCCGAAGGCTTACTTCTCAGCGAA AAAGTTGGGCTGGATCCAAAAGTACTTGTGGAGGTAATTTCACAGGGTGCCATTAGTGCTCCAATGTACTCAATGAAAGG CCCATCCATGATACAGTCACTTTACCCAACTGCATTTCCCTTAAAGCATCAGCAGAAGGATCTAAGACTTGCCCTGGGGT TAGCAGAATCTGTTTCCCAACCTATTCCAATTGCAGCAGCAGCTAATGAGCTATATAAAGTTGCAAAATCCCATGGCCTT AGTGATCAGGACTTCTCAGCTGTCATTGAAGCATTGAAGTCCAAGTTTCAGCACTCAGAAAACCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0026900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRSMVNCHPFVLHRLPHHHLFNHFRPFRFSMSAQLSNVSPQSQVIEAPARVGFLGIGIMGSPMAQNLLKAGIDLTVWNRT KSKCDPLISLGAKYKSSPEEVAASCDVTFSMLADPQSAMDVACGKHGAANGMGPGKGYVDVSTVDGDTSKLISEHIKSTG ALFLEAPVSGSKKPAEDGTLIFLTAGDRNLYETVAPHLDIMGKSKFFLGDVGNGAAMKLVVNMIMGSMMASFSEGLLLSE KVGLDPKVLVEVISQGAISAPMYSMKGPSMIQSLYPTAFPLKHQQKDLRLALGLAESVSQPIPIAAAANELYKVAKSHGL SDQDFSAVIEALKSKFQHSENQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43580:SF6
27 336 310 7.7E-183 –
PANTHER
PTHR43580
27 336 310 7.7E-183 –
PIRSF
PIRSF000103
45 341 297 3.2E-103
IPR015815
Gene3D
G3DSA:3.40.50.720
49 211 163 3.5E-46 –
SUPERFAMILY
SSF51735
49 210 162 2.14E-40
IPR036291
Pfam
PF03446
50 206 157 1.6E-38
IPR006115
SUPERFAMILY
SSF48179
210 338 129 8.28E-35
IPR008927
Gene3D
G3DSA:1.10.1040.10
212 335 124 1.5E-36
IPR013328
Pfam
PF14833
212 331 120 2.0E-28
IPR029154

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0050661
Molecular function NADP binding Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
Subterm of
GO:0051287
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0026900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…