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LotjaGi3g1v0043800.6

Overview

Field Value
Gene ID LotjaGi3g1v0043800
Transcript ID LotjaGi3g1v0043800.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A1J7FWH1|A0A1J7FWH1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:4685062..4685904) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGAAAACAAGACCAGGCAAAAAGGACGTGGACTCATACACCATCAGAGGAACCAACAAGGTTGTCAAAGGTAGTAA CTTGCAACAACAACGCTGAATACAACAAATAGTGAATACCCTTTTCTCCAAATGGCGATTTTCGCGTGAAAAATGGTTCC TTTCCGTGTTTTATGAAATGGGGTTGTTGAATTTTGTTGGTGTTTTTTTTCAGCTGGTGACTGTGTTCTGATGCGGCCTT CGGATACTTCAAAGCCACCGTACGTGGCGCGTGTGGAGAAGATCGAGCAGGATAACCGGAGCAACGTGAGGGTGCGGGTG AGGTGGTATTACAGGCCTGAAGAGTCGATTGGAGGTCGCAGGCAGTTTCATGGTGTCAAGGAGCTTTTTCTGTCTGACCA TTTGGATGTTCAGAGTGCTCATACCATTGAAGGAAAGTGTATTGTGCACTCTTTCAAGAACTATACTAAGCTTGAGCATG TTGGTGCTGAGGATTACTATTGTAGATTTGATTACAAGGCTGCTACTGGGGCTTTCACTCCTGATCGCGTTGCTGTGTGA GTTTCGGTTTCCCTTTGGTTTTTGTTATAAAGTTTGTGGTTTTTTATGATGGGAATTGTGTTTTTGAGTTATGTAACTGA TGGGGTTTTTTGTTTTTTTGTGTGTTTTGAAGGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACA ATGTGAAGGGTGCAAGGATTGGTATAAATCTGTGTATTCTGCTTTTTTGCTTTGTCTATTAATTTTCTAATTGGATTCGA TTTCTAGATGTTTGCTTTAATAGCAGTCAATAGCACGCTATAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0043800.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAAAACAAGACCAGGCAAAAAGGACGTGGACTCATACACCATCAGAGGAACCAACAAGGTTGTCAAAGCTGGTGA CTGTGTTCTGATGCGGCCTTCGGATACTTCAAAGCCACCGTACGTGGCGCGTGTGGAGAAGATCGAGCAGGATAACCGGA GCAACGTGAGGGTGCGGGTGAGGTGGTATTACAGGCCTGAAGAGTCGATTGGAGGTCGCAGGCAGTTTCATGGTGTCAAG GAGCTTTTTCTGTCTGACCATTTGGATGTTCAGAGTGCTCATACCATTGAAGGAAAGTGTATTGTGCACTCTTTCAAGAA CTATACTAAGCTTGAGCATGTTGGTGCTGAGGATTACTATTGTAGATTTGATTACAAGGCTGCTACTGGGGCTTTCACTC CTGATCGCGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAG GATTGGTATAAATCTGTATGTTTGCTTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0043800.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKTRPGKKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESIGGRRQFHGVK ELFLSDHLDVQSAHTIEGKCIVHSFKNYTKLEHVGAEDYYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK DWYKSVCLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46364
1 168 168 1.2E-106 –
PANTHER
PTHR46364:SF6
1 168 168 1.2E-106 –
Gene3D
G3DSA:2.30.30.490
1 127 127 2.3E-28
IPR043151
ProSiteProfiles
PS51038
21 136 116 23.667
IPR001025
SMART
SM00439
21 136 116 7.8E-40
IPR001025
Pfam
PF01426
23 135 113 2.1E-22
IPR001025
Gene3D
G3DSA:3.30.40.10
128 169 42 6.4E-10
IPR013083
SUPERFAMILY
SSF57903
132 168 37 5.54E-10
IPR011011

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003682
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0043800.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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