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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0043800 |
Transcript ID | LotjaGi3g1v0043800.5 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A0B2RYF3|A0A0B2RYF3_GLYSO BAH and coiled-coil domain-containing protein 1; Found in the gene: LotjaGi3g1v0043800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4683872..4685904) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAAAACAAGACCAGGCAAAAAGGACGTGGACTCATACACCATCAGAGGAACCAACAAGGTTGTCAAAGGTAGTAA CTTGCAACAACAACGCTGAATACAACAAATAGTGAATACCCTTTTCTCCAAATGGCGATTTTCGCGTGAAAAATGGTTCC TTTCCGTGTTTTATGAAATGGGGTTGTTGAATTTTGTTGGTGTTTTTTTTCAGCTGGTGACTGTGTTCTGATGCGGCCTT CGGATACTTCAAAGCCACCGTACGTGGCGCGTGTGGAGAAGATCGAGCAGGATAACCGGAGCAACGTGAGGGTGCGGGTG AGGTGGTATTACAGGCCTGAAGAGTCGATTGGAGGTCGCAGGCAGTTTCATGGTGTCAAGGAGCTTTTTCTGTCTGACCA TTTGGATGTTCAGAGTGCTCATACCATTGAAGGAAAGTGTATTGTGCACTCTTTCAAGAACTATACTAAGCTTGAGCATG TTGGTGCTGAGGATTACTATTGTAGATTTGATTACAAGGCTGCTACTGGGGCTTTCACTCCTGATCGCGTTGCTGTGTGA GTTTCGGTTTCCCTTTGGTTTTTGTTATAAAGTTTGTGGTTTTTTATGATGGGAATTGTGTTTTTGAGTTATGTAACTGA TGGGGTTTTTTGTTTTTTTGTGTGTTTTGAAGGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACA ATGTGAAGGGTGCAAGGATTGGTATAAATCTGTGTATTCTGCTTTTTTGCTTTGTCTATTAATTTTCTAATTGGATTCGA TTTCTAGATGTTTGCTTTAATAGCAGTCAATAGCACGCTATAGCGGTGTAGCGGAGCGGCTCCCTGCCGCTATTGAGATG AAATAGCGGCACATTTCGCAATAGCGGCAGATCGCGGCCAGTAGCGGGAAATAGCGGCGCTATATGGACGAAGGAAAAAA TGACTCAACCCCTCGGTTTAAAATTGTTGGGGAACCTGTTTAGGGGTATTTTAGGACTTCTTAGGGAACCTGTTTAGGGT GCTAACTGCTAAGAGTTAAAAGACCAATGTTGGCCCTAATGTGATAACGAGGATGTTTAACGGCATGGTTGAATTTTAGT AAGAGAAAACAAAAGTCTCCGATTATTGAAACTGACATAATACTTCATTAAATGCACATTTTACAATTTACTCCCGTGCC AACATTTATTCTAACACTCCATAAGATGACAAGAAGTATTTAAGAAGCTGGGGGAAGTTTCCAATATTTTTATTACTCTT AAAGTTTCAGTTATTGTAACTCTATCTTGGCATATGCATACCTTTTGCGTGGTTGTCTTGAGTAAGTATTTGAGTTGTGA GAAAAAAAGAGAAAAGAAAGGTTGACTAAATATTTAAAAGATTGTCCATTACATGCCAAAACTTCAAGGGCAGATGAATT TTGTCTGAGCTTGTACCTTCTGATGTGTGTTTATGTGGTTTTTTTAGCCCCATATCACTTCTTTGGGCTCTGCTGTTTCT TTTCTCTAATATATATGTCTGCCAATATAAATTGAATGATGCAGAGGCTTATGTCTTCTTTTGATTGGCTTGATATAGTG AAAGTTATGCTGAGACACTTTTTTAGTATCCATGTAAGATTTGGGATGAGAATTTTGCTACATTCCTGGAATAAACCCTG ACTTATTGGAATCACTTTTCTATTCATCGTGAAAGAGTGTTAAGTCTAAAGAATGACCAAGAATTATACTACTGTGGGTT TTTATATCTGTGTATTTTCCTAAATGTTTTATGAAACGCAAATTTCAATCTTTGTAGGTTTCTTGTAGGTACCATCCTGC CTGTGTGGGCATGACTATCGAAGAAGCAAAGAAACTGGAGCATTTTATGTGTTCTGAATGTTCGTCAGATGATGATGTGA AGAAACCCCATGCTACATTTTCTGCATCACCAGGTTCTGATATCAAGGTGACTTTCTCCATCCAGTATCAAATTATTGCA CCTTTACCTTGTTCTTATTACTTATTTTCCTAG
CDS sequence (LotjaGi3g1v0043800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAAACAAGACCAGGCAAAAAGGACGTGGACTCATACACCATCAGAGGAACCAACAAGGTTGTCAAAGCTGGTGA CTGTGTTCTGATGCGGCCTTCGGATACTTCAAAGCCACCGTACGTGGCGCGTGTGGAGAAGATCGAGCAGGATAACCGGA GCAACGTGAGGGTGCGGGTGAGGTGGTATTACAGGCCTGAAGAGTCGATTGGAGGTCGCAGGCAGTTTCATGGTGTCAAG GAGCTTTTTCTGTCTGACCATTTGGATGTTCAGAGTGCTCATACCATTGAAGGAAAGTGTATTGTGCACTCTTTCAAGAA CTATACTAAGCTTGAGCATGTTGGTGCTGAGGATTACTATTGTAGATTTGATTACAAGGCTGCTACTGGGGCTTTCACTC CTGATCGCGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAG GATTGGTACCATCCTGCCTGTGTGGGCATGACTATCGAAGAAGCAAAGAAACTGGAGCATTTTATGTGTTCTGAATGTTC GTCAGATGATGATGTGAAGAAACCCCATGCTACATTTTCTGCATCACCAGGTTCTGATATCAAGGTGACTTTCTCCATCC AGTATCAAATTATTGCACCTTTACCTTGTTCTTATTACTTATTTTCCTAG
Protein sequence (LotjaGi3g1v0043800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTRPGKKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESIGGRRQFHGVK ELFLSDHLDVQSAHTIEGKCIVHSFKNYTKLEHVGAEDYYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCK DWYHPACVGMTIEEAKKLEHFMCSECSSDDDVKKPHATFSASPGSDIKVTFSIQYQIIAPLPCSYYLFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 210 | 210 | 2.6E-128 | – | |
Gene3D | 1 | 126 | 126 | 6.0E-28 | ||
PANTHER | 1 | 210 | 210 | 2.6E-128 | – | |
SMART | 21 | 136 | 116 | 7.8E-40 | ||
ProSiteProfiles | 21 | 136 | 116 | 23.667 | ||
CDD | 22 | 156 | 135 | 6.72072E-55 | – | |
Pfam | 23 | 135 | 113 | 4.8E-22 | ||
Gene3D | 127 | 202 | 76 | 4.5E-21 | ||
SUPERFAMILY | 132 | 190 | 59 | 5.09E-19 | ||
ProSiteProfiles | 138 | 189 | 52 | 9.196 | ||
Pfam | 140 | 188 | 49 | 2.5E-10 | ||
SMART | 140 | 187 | 48 | 3.0E-10 | ||
ProSitePatterns | 141 | 186 | 46 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi3g1v0043800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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