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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0044200 |
| Transcript ID | LotjaGi3g1v0044200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-BINDING TRANSCRIPTION FACTOR 2; TAIR: AT3G18380.1 DNA-BINDING TRANSCRIPTION FACTOR 2; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|G7LDQ2|G7LDQ2_MEDTR Sequence-specific DNA-binding transcription factor; Found in the gene: LotjaGi3g1v0044200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4708251..4715311) extracted from Lotus japonicus Gifu genome v1.2.
CCTGGCTTCACTTTGTTGCTCAACCAAGGTTTCAAGTTTGAAACTTGAAACTTTCTCTCAATCCAAACGCTGCCTCTTCG CTTTCTCTCGTTTTCTCTCCTGTTTCTCTGGGATCCCTACCTCCTTCCTTCATGGGTCGTCCACCCAGTAATGGAGGCCC CGCCTTCCGCTTCACTCAGAACGAGGTATTCATCTATTCCATTCGATTCTCACTCCAAATTTCAACTTCTCATGATTTTC GCGTTTTTTTCTTCATCTCGTGTTTTATATAATGGGTGTACGTTTTCACGCTAAAGTTTGAATCTTTCACTGATTTAATC ATCTGGGTCTTCATCCAAATTGCATGATTTTGGGAATCTTAAATTTTTCGCTGGATTTTGTTTAATTCGTTTTTTGTAAC ACATTTGAATTTTGGATATTGGATATTACATTTGTGTTGGCATAGCCAATGCTGGATGCTGATAGTAATATATGCATCAA GTTAGGGCTCTTGCATTGGGTTTTGAATGAGGGAAAGTGATAGCTGTATCACTTTGTGACTAATCTTGTGCTAGTATTGA CAAGTGGTATGAAATTGGTGTGATGTACAAACCTCAGTAGTGGTTACCCTTAAGTAAGTTTTGTTCTCAGCCTTAGAATT TGGGTGTAGTGGGATTAAATTCGAGCGTTAAGCGGCTATTCCGTGGGTTCTTCGTTGATCATAGTGAATTTTCTACATTC TTTGCTTTCCCCCATTGATGTATGTCTGTAGCTCTGTTTAGGTCTTAGATAAGTTTTGTTCCCAGCCTTAGGGTCTGTGT GTATTGGGATTAGGCTATAAGCATTGAGGGGTTACTCTTTGTATCATTGATCAGAGTGAGTTGTCTACCTTTTTTCCACA TTGATGTATGTTTTTAGCTCTGTGTTTGTCATACCGTGTTGCGTTAATGTCTGTGTGCTGTGTCTATTTTCTTCTCCACA CTTTATGCTCACTTGTTTTAGTCATTGGTGCTGATGATTGGTCTCCAAGATGTGTTTGTTTATCATCCAACTTTCTACAG TTCTTTTACATTTTAGATCTTGCAAACTTTATGCAATGAGAGAGCATGTTGTTTCTTTATGGGTGGATCAGTTTTGGTTA TAAAGTACATTGGAAGACATGTTACTGAGTTTGTGTGGGAGTTCTTGCAGAACCCTGTTTTAGACCATTTCCCTGTATTT TTCTTATCTTGTGAGGTTACATTGTCCTGGTCCCTACTCTGTTTTGCTTTGAGAACATGTGATATAATCACCTCTCTTTA TGATTGAATAAATAGATTTACGATGCAATACAAGGTAGCATTCTATGATAGAATTGAGTAGAAGGCTAGATTTCATTAGT CCAATGAAAGATTTCGTTCCAAAAACTATTGTTTGTCTATATAGGTGGCAGAAATGGAAGCTATTCTTCAGGAGCACAAC AATGCAATGCCTGCACGTGATGTTCTTGCAGTTCTTGCAGAGAAGTTCAGGTGTGCTGCAGTGCCCATATACTATTTTTG AGAATTTTAATGAGTATCAAACTTTGAGCAGTATTTAGTATGCTCCTGAAAAGTGGGATTAATTTTGCGTTTTTTTTTAA TGCAGTGAATCACCAGATCGGAAAGGCAAGATTACAGTGCAGATGAAGCAAGTATGAGTACTATATTTTATAATGATAGG GAATTTTTCAGCCTTCAATTTCTTAGTTTTCCTCTTCATTATAGGTTTGGAATTGGTTTCAAAATAAAAGGTATGCGATA AGGGCAAAATCAAGTAAGACTCCTGGAAAGTTAAATATCACACCTATGCCTCGGGATGATTCAGCCCCAGTCAGGAATAT GTCTCAACCAATAGCTGCACCAATTCTTACCGGTCCAGGTTCAGGTAGAATGCTGCTTCTTCTTAGGTTTTTAATTATAT TCATTTTGCTTGAATCCATATTCACTCTTATTTGTTAGTTCTGGTTACTTAATGTTGTGTTAATTTCTTTTTAAATTTTA TTATGCTTCCTACGAAGCTCATATACCATATCAGTGTTAATGTCTAGGATGACTAATATATCTTAGTTGGTGATGCTAAT TTTGCAGATCTATTTAGTTTTTAGGGCTAGATGTCCTTTGCTTTATTGCGTTATGTTTCTAGTATGATTTTGTATTGTAG TGTGCATGGGGAAGTTCAAAAAGTAATAAACTATTTTTTAGAGAGCTTTCTGTTTCCATTAACATCCTTGTCTACCATAA TTCTAAGTAATATCTGTTTTTACATTATTATTGATTTCTTCCTTCAACAAGATCAGTGTAAAATGGGGTCAAATGATTTA GGGTTTTAAGCCCAATGGTGTTGTGTCCTACTTGCTAATAATACAACACAGAAGTTTGCGGATTTGAAAGCAAAATATGT TAATCATATTGTTGCCTGAAATGCCAATTTTTTCAAACTAGAATATACATATGAATCAAACGATACATTGATTCCAAACT TGATCTTCCATGTATTTCTGTGAATATACCACTTTTTTGGCCATAGTTCGGAATTCTGGTGAACTCTTCTGGGTGCTACT GTTAAATATCTTGCACGATCTTAGTAGCTGCTGAGTTTCAAATTCTAACACCATTTACAATATTGTTTTTGAACGGATGA TAGTAATTCTGTGCAATCTACTTTCTAAGTTAATCTTTTTAGTTTCAAGTTATTTTGTAGTAGTGGCAACTACTAACTGG CATTTTAGATTTTTGCTGAAGCAAAACTAGCACTTATTCTTTTATGTTGTTGCACTGCCGTAAGACGTGTTGTTGGATAT GAACTTTCTGCCCCTGTTCCAAGTTAAGTATGTATTATGCATTACCTGATCTAAAATCTTGTGACATGCAGGAGTGCAAA TGTTGTATAATTGTGCAATACTATGAATAATTCAGGCTAAAGTGATGTATGATGTATCTCATTTTCCAAGTACTGTATGG TACCCAAATTAGTGTGACTTTAATAGAACTGGACCAGAATTGAATTTAATGGTGTGATTTTGTCAGTCTCTGGATTGGTG TAAGAGAGAAAAAGCACAGAGATTGAGAATAATATGGGATGTAGATGTACAATTTTCCCTCTCGAGGTATTTGAGAGACC TGGCCTCTCCTGTTTTTCGCCCTTCAAACAATCCATATCCTCAATCCCTCTCCATAATATCCTTATATCCAACTACAGAT GTACTGTAACTAACTAAATGGTTACTGCTGCGATCTGTTATTTCTATTAATGACATATTTAGACCCTTCTTCTCCACTCT CACCCTAATTCTTCCTACCATTGAATTATTGGAGGTTTTCTAATAGACTGGAACCTGATATAGATTTGGTACATCTGTCA TCATATGATCATACATTCATACTCAAGTGTTATTTAAGCATGTTGACGTGTCTAGAGATTCATCATAGGCCGTGTCTGAG CTTAAAATTAAAAGCTTACCTCCAAGTTGCATATCTCAGTACACATGTTGCTATAATTTGTTAGTGCACTGTTAATACTG TTTCTCAAGAAGATGTTAATATATGTCGTAGCAACTGATTTTGCTGTTATGATCTGGGCTGAAAGGTTTACTGTATGCTG CTTTTAATCCTCCATTTTTTGGGGGTACAATGCTGCCTATATCTTTAATAGTCAATAAATAAGATTCTATCACAAAAAGG TCCTACAGTCCTACTATGGATTGTCTTCATTATAGAGTAAGGTGCTTATGTTTTTATGCTCTTATGATTCATTTGATTTA TACTCACGTACACTATTTTCATTTTGTTCTACTCAGTTCCAACAACAGCAAAAGTTACTCCAGAAAATTCAGTTATGGAA TTTGAAGCTAAATCTGCAAGGGATGGAGCATGGTCAATATTTCCTCTTTAATGTTTAGGATATTCTGTTGTTTATTTGTC TTCTTAATTATTTTATATCCATGGGCCTGACTTTTGTGTCTTCTGTTTGTTAGGTATGATGTGGCTAGCTTTCTATCACA CAGATATTTGGAGTCCAGTGATCCGGTAATTTTAAGATGAGATTATTTCCATTCATAAGTTTTGGGGAAGGAATTGATGA GATTTTTTACATTGTTTTCAGTTGTCCTTTGGCCCTAAAATATTGCTTTGCTGATCCTACGATTTTACATCTATGTATTC CTTTATGTACATACATGAATATTAAAACTGCCCATGTAAAGTTATTAAATAGAATGTTCTTGGTGGTTCAACCCTAGCAG ACTTGTTAGAATATATTAGGGGATACTAGTTTTAATGTTAGCAGGCTTATGCTTGTACTAGTGTTAATAATACTACATAT AGTTAATGATTATACTAATATCGTTATACATTATCCCTACAATTTAGGAGTTTGATTTGTAATCAGAATTAAACTCTAGC ACTTGTATATAAATTCATGAAGGCGTAAAGGAATATGCAATTTCAACTATTCTGAAGAGCTGAAGTTGGCATCTAGAGCC TCCTCCTCTCACTTTTTTCTGATAAGATAATCATGAGATATATACTATTTGTGTTTACTTCCAGATTTGTTTTAAAAAAG TTTTCTGGGGTGGTCGCGGAGGACTTAAGTATTAAATAAATTAAATTGATTTGGTACTCAGTTTCCAGGTATCTCATAAA TGGTGCTGTAGTTAGCTTCAGTTTTGTCATCAAATATTTTGCAGAAATTTGAAGAAATTGTTGTGCACTTCGTTTTAATT TGTTCATTGTTCTGCCTTTATAGATCAAGTAATCGTAATTTCTTTCTCCATGCCTCAGGAAGTGCTGGTACGGTTTGCTG GTTTTGGACCTGAAGAAGATGAGTGGGTTAATGTTCGAAGGAATGTTCGGCCCCGCTCTCTACCATGTGAATCATCTGAA TGTGTTGCAGTCCTCCCTGGAGATCTTATACTCTGTTTTCAGGTTGGACTATCTGTAGCTAGATGTCATAAAAAGTTAAT TCAATCATTGAAATTTATCTCGAATGATATGTATATATATACATATATATATTGTGACATGTATCTTTTCCTATCAATAT AGAAGTTTTGATTTTTGACATTACAGGAAGGTAAAGAGCAAGCTCTTTACTTTGACGCCCATGTCCTTGATTCTCAAAGA CGAAGGCATGATGTAAGAGGCTGTCGTTGTAGATTTTTGGTTCGTTATGATCATGATCAGTCAGAGGTATTAATATTGTC TTATGGATTTTTTTTCTTTCATGATTGGATTATGTTACATCGTTTTTTTGTTTCAAATAGGATTTTAGTCCTTATAGTTT TCAGTCACTTCAGTTTTGGTCCCTATAGTTTTTTTATTTTAGAATATCATTCCTTTTACTTTCCACTTATTTGGATTTTG GTCTCCATCCTTAAGGCATTATTCCCTATTTTCATTCTTTGGGTTTTAGTTTCTATAGTTTCTCAAAGATATTGCTCTCT GTTTTTTCAGATAGGATTGGTCCCTATAGTTTCCACTTACTGAGGTATTTGTCCCTAACTTGTGGACCTAAACTCAGATA ATTGAAAATATGAGGAACAATATAAAAAAAAGAAAAAAAACTAAAGGAACCAAAACTTTAATGAATGGGGAATGGATTCT CTCATGTTGGATAGAACCTTTCTTAAATTTTATAAATGTTTTAAGCATAAAATTTTCAAATAACAAGTTTATGTAAAATC TAATATTGGAGTTAACATACCCAATGAATGGAAACTACTGGGACCAAAACTTTATTTAAACTTTTTTATATAAAAGTTCT ATTCCACAAGTGAGGGTCAATCATATGGAGAGAAGATAGCAATTAGCTTAAGTATTATGACGCACTTAAATTTTTTTGGT TCTTGAGGTTTAACACACATGCTTTTTAACTTTTAACATTATATATTGAATTGTTGATTCTTTAAAAGGTTTCATGTTCA GATACCGTCCTCTTAACTTCTCGTTCTGAAATTGTCTACATATTAAATCCCTATTTCCCGTTGGAATTTTTCAGTCCAGT TGCCATCATTTTTATGAGAGGATCAATTTATGCAGAATGACTGCAAAACAGTGAACTGAACTGACTTATGACTGTGCTTG TTGCTATTGCTTCACAATTGTGCCATTTGAAAAGAGGCAGATTCACTTATTTTACAATATTCTATCAATTGATTTAATTC GTTTTAAGTTTTTAAGTAAAGAAAGACATTGGCAAATATAACCATATAACTTCTGTTAAAGATCCCTCAATCAATTCATG TTGTTGATACGCCCATCTTGTGATTTTGCCAGGAAATTGTGCCGCTTAGGAAGGTTTGTCGCAGGCCTGAAACTGATTAC AGACTACAGCAACTTCATGCTGTGAGTGATTCAGCACATGTGGATCAGCAGAAGAGTGGCATGGATGCTGCAAATGTTTA CACTATCAGGGTTACTAGTTCTTCTGAAACAGTGCCAAAGCAGCAGGTTACAAACATTCATCAACTCCCAACACCAGTTT TGCAACCAAATGTTTCTCTAGCCCCACAGAGTATGAATGTGGATCCAAAGAAAGCTGAGACAACTGATGTTCAACCTGGA AATTCCACCATTGTCCCAGGCAGTGTCCCATTCCCTAGCATAGTTACTACAACTAGTGCTCCTGAAGTCCCTACTCAAAA CATGGCTGAAGGAAAATAACTAACTATGTCATGTGAATGGGACATCATTAAATGCTCTCTTTAGACTAGTAATTAACTGG AAAGTTATCTTAAGCACACAGCGCTTGTACATGAAGTTTCTCCTGCTGTTTTATCTCAAATGTGGAAACTTACAAGAATG AGTTTACACAATTTTCAAGCATATAGAGGTAGGCATTTCATAACCAAAAAAAGAGAGAAAAACTGCAGTATATATAGGTT AAGTCCAAACAATTCAGCTGGTGTTCAAATTAAGGTATTATTCACTTTATTTCTGTGGTCAAATTCGCATTATCTTTTTC TAGATGAAAATGTTCCTAAATTCTCGTTCCAACAAGGAACAAGTTCAAGTCAAGTATCCATTTTGAGTTTTTTTTTTTGA AATTACATCTTTTTAAAAAAT
CDS sequence (LotjaGi3g1v0044200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGTCCACCCAGTAATGGAGGCCCCGCCTTCCGCTTCACTCAGAACGAGGTGGCAGAAATGGAAGCTATTCTTCA GGAGCACAACAATGCAATGCCTGCACGTGATGTTCTTGCAGTTCTTGCAGAGAAGTTCAGTGAATCACCAGATCGGAAAG GCAAGATTACAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAAAGGTATGCGATAAGGGCAAAATCAAGTAAG ACTCCTGGAAAGTTAAATATCACACCTATGCCTCGGGATGATTCAGCCCCAGTCAGGAATATGTCTCAACCAATAGCTGC ACCAATTCTTACCGGTCCAGGTTCAGTTCCAACAACAGCAAAAGTTACTCCAGAAAATTCAGTTATGGAATTTGAAGCTA AATCTGCAAGGGATGGAGCATGGTATGATGTGGCTAGCTTTCTATCACACAGATATTTGGAGTCCAGTGATCCGGAAGTG CTGGTACGGTTTGCTGGTTTTGGACCTGAAGAAGATGAGTGGGTTAATGTTCGAAGGAATGTTCGGCCCCGCTCTCTACC ATGTGAATCATCTGAATGTGTTGCAGTCCTCCCTGGAGATCTTATACTCTGTTTTCAGGAAGGTAAAGAGCAAGCTCTTT ACTTTGACGCCCATGTCCTTGATTCTCAAAGACGAAGGCATGATGTAAGAGGCTGTCGTTGTAGATTTTTGGTTCGTTAT GATCATGATCAGTCAGAGGAAATTGTGCCGCTTAGGAAGGTTTGTCGCAGGCCTGAAACTGATTACAGACTACAGCAACT TCATGCTGTGAGTGATTCAGCACATGTGGATCAGCAGAAGAGTGGCATGGATGCTGCAAATGTTTACACTATCAGGGTTA CTAGTTCTTCTGAAACAGTGCCAAAGCAGCAGGTTACAAACATTCATCAACTCCCAACACCAGTTTTGCAACCAAATGTT TCTCTAGCCCCACAGAGTATGAATGTGGATCCAAAGAAAGCTGAGACAACTGATGTTCAACCTGGAAATTCCACCATTGT CCCAGGCAGTGTCCCATTCCCTAGCATAGTTACTACAACTAGTGCTCCTGAAGTCCCTACTCAAAACATGGCTGAAGGAA AATAA
Protein sequence (LotjaGi3g1v0044200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSK TPGKLNITPMPRDDSAPVRNMSQPIAAPILTGPGSVPTTAKVTPENSVMEFEAKSARDGAWYDVASFLSHRYLESSDPEV LVRFAGFGPEEDEWVNVRRNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDSQRRRHDVRGCRCRFLVRY DHDQSEEIVPLRKVCRRPETDYRLQQLHAVSDSAHVDQQKSGMDAANVYTIRVTSSSETVPKQQVTNIHQLPTPVLQPNV SLAPQSMNVDPKKAETTDVQPGNSTIVPGSVPFPSIVTTTSAPEVPTQNMAEGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 335 | 335 | 7.6E-173 | ||
| PANTHER | 1 | 335 | 335 | 7.6E-173 | – | |
| SUPERFAMILY | 4 | 76 | 73 | 2.95E-10 | ||
| SMART | 7 | 81 | 75 | 0.0012 | ||
| Gene3D | 9 | 83 | 75 | 9.7E-6 | – | |
| Coils | 12 | 32 | 21 | - | – | |
| ProSiteProfiles | 13 | 77 | 65 | 9.475 | ||
| CDD | 13 | 75 | 63 | 4.00869E-4 | ||
| Gene3D | 126 | 187 | 62 | 8.7E-32 | – | |
| Pfam | 129 | 255 | 127 | 1.5E-41 | ||
| CDD | 142 | 174 | 33 | 0.00668559 | – | |
| Gene3D | 188 | 260 | 73 | 5.4E-37 | – | |
| MobiDBLite | 332 | 374 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi3g1v0044200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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