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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0057900 |
| Transcript ID | LotjaGi3g1v0057900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT4G12010.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|V7CCD5|V7CCD5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0057900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6012956..6017061) extracted from Lotus japonicus Gifu genome v1.2.
CATTTGTTAAGCAATAAAAAACAAATATCATAAGTAGCCTATTCCCTTGTCAATTTAGTTAACTCCTTTCCAACCAATTT CGTAGCATCTCTGTGCTTTGTTCATTTTGTGGCTCACTGGTATCGTGATTAATCACAGTCCAAAGCTTCACGTTCCATGG GAAATCACGATGCAACATACTCAGATCATTTCACGTATGATGTTTTTCTTCTGAGTTTTTCAGAAAAAGAAAGCTGCGTT TTTACTGATTATCTCTACCAAGCTTTGCTCGATGATGGAATCAAAACTATCAGATACAATGACAAAACACACTCTCTTGT TGAGAAGACAATTGAGGAATCCAGATTGTCAATGGTGGTGTTGTGCGAAAACTACGCGTATTCCCCTACGTGTCTCGATG TACTTGTCAATATTATTGAGTGTTATGATGCCAAAGCGAAACAGGTTTCAGTCATTTTTTACAAAGTGGAGCCATCGGAT GTTTGGCTTCAGGAAAATTCTTATGCAGCAGCTATGATTGAACATGAAAAGAATTTTGGTCATGACTTGGACAGGGTGAA AACATGGAGGTCAGCCCTGTCTAGAATCAAAGACCTTAGTGGAGAATACTGCACGGACGACAAGTAAGTTTTCTTTATAA ATCACATTTAGCTGTGAAAATGTACCAATTGTTAAGTTTCTACGACTGTTTCAGGTTTCTTTTGTTAGAAATTGTGGTTC TAAATTCTCCCACTTTCTAAGCATGTTACACCTCATGCTTCTTGATCCACCTCCTACTTGTTACATGTCTCTCTCTAAGC TTTGCACCTCATGCTTTATGGCATGATTCATGCATCAAATTCCAGCTCCTGCTTGCTGTATTTGGACGTGGCAAAGCATG ATATATTCATAGCCTTCCAACTCTTCCTTGCTATATTTATACGTGGCAATTTCTGCCCCAATTCCTTCACTATTAAGCAT TGGTTGATTGATTATATATATGGCTGCAATACAAGGATGCAATATCACACAGAGAGAACATATACACGAGAAGATTGTGA GCAACACACACATATACAAATCTCAACATATAGAGTTTGTTAGTGAGTGAATTTTGGTGAGAATTCTAGTTTCATTTGAG AGAGTTATCTTGTGGGAAAAATATTTCTCTTTGTCCTCATTTTCTATAAGAGGATTTGTTGTACTCTCCCTTTTACATAG TGAAACTGTGCTCGTGATCGCCCGTGGTTTTTTACCTCTCACATTGGGAGGGTTTTTCCACGTAAATCTTGTGTGTTCTT TTTCTTGTCACTTTACTTTTACTTCTCTTTAATTCTCAATTATCTCGATCATGTGCTTCCGCATTGCGCTGATACCCTAA CATCTTTGGACACTATGTTAGTATTTGAAAGAAATAGAAACAAGGTAGTTGTGATAAATTGTGTGAAGAGTGAACTATGA AACACATGTTAGTTATATATGACTTGTTACCTATATGACACTTATTACACTAAACAGTGAATTGAATTGGGAATTAGGGT TATTTCATGCTTGAAACAGGGAATTGAATTTGGATTTTGAAAATTGGAAGTAAAACCGGTTATGAATTAGGAATATGAAT AATGGAATATTGAATTTTTAAAAATATTGAATTTGGTTTTGGATATGGTAATCCGGTTTTTTAACTAAATTTAAAAACTG GATATCCATATTGGTATCCGCTTTAAAAAAATGGATAAATTAAAACCGGTTTTATATGAAATCGAATTTTCTGGATATGG TTATGGTTTGGTTATGGATTGGTTATTGAAACCGGATTTTTTGAACACCCCTACTAAACACGTACTTTGATCTTGTGTTC ATATGGAAGGATATCACTTAGAGAATTAAGATTATTTATCCTTATTTAGTGTTCAATTCCATGTCTGAACAATAAAATTG TGACATGTTAATTAAAAAAGACATGAATAATTGGATTCAGTAGTTATAAATTTACCTGCTGGTTTTTAAGTAATTAAATA TAATTTTATTAATGAGACAATGAAAGTGAAACTAAACAATGTATTTCATTTCGCACTTGAGAGAGGGAGATGGAAAAGTT TTAGTAGCATGACTTAGGAACACATTTATTACATTTAGCCCGAGTTTGTATAATCAAAACTTGTACCAAACAACCAAACA AAACACCGTATAGGAAAAATCACATTTAGTATAGAGAAATATCAAGTTAATTAACACTCAACATTATAACTGCTAGATTT TTGATTCGTTTACCACGATTTTGTGATAGACGTCTGATACCTGAAACCGCCACAAATTGTGGAGTTTATAGAAGCTCTGC AATTGTGATGATTTCTGGTCGTCACAAAATTGCAGAGATCGCTACACAAATAATTTTGTTATGGTTAAATTAAACCAACA CTAGAACAGGAGTAAGATTGTGTGCCTTTTTCAGGTATGAATCTGGCTTCATCAAGATGATTGTTAAGGCCACCTCTGCT AAATTGCCTCCTCCTCCCGTGCCTTTAGAAATGAAGCACCTAGTGGGACTTGATTCTCGATTTGAAGAGGTGAGATCACT TTTAGATATTGAATCCAATGACGCTGTTTGCATGTTGGGAATTCATGGAGATGCTGGAATAGGCAAAACCACACTTGCCG CATATTTGTATAACAAGATCAGGCATCAATTTGAAGCTGCCAGTTTTCTTTCTAATATAAGAGAAAAATCAAACAATGGT AACATCACTAATACTCTGGAAGATCTTCAAAAGACACTTCTATATGAGACTGTTAAGGAAACACAAGTCATGACGAGAAA TACATTTGAAGGACGATCTCAAATAAAATCCAAGCTTAGTCATAAAAGGGTTCTATTGATTCTGGATGATGTTGATGATA TAGAACAATTGGAAGCACTTGCCGGAGGATGTGATTGGTTTGGTTCCGGTAGCAGGATCATTATAACAACAAGAGATGAA AATGTGCTAGATAAGCACCAGGTTGCAATTAAGAAATATAAAATACAGGAGTTAAACTTCGGTGACTCACTTGAACTCAT GTGTTTGTATGCCTTTGATATGAGCAAACCTGCAGAGGACTATGAAGATATTTCTAATGATGTGGTAAGTTATGCACGGG GTTTCCCACGAGCTTTAAAAGTCCTAGGGTCTCATTTGAAGGGTCTAAGCGTAAAGGAATGGAAGATGGAGTTGAAGAAA TTTAGAAAGGTTCCAAATGCTTTTTCTTTTTTGGCAGATTCTTTCTGAAAAGGAATCATGGTGTTGGGACACATGACTAC CCCATTCATTTTCTACGTTCTCATCCCCACACCCCCTTGTCCCGACAAGTTTATTTTATGAAATTTTAGGTCTTACACTT CTAAGTGAAGGGATACATGACTGAACCGATTACGTCCAGAACAAGTGGTATTCTATGATTGTATAAGTATGAGATTATTC AGTTGATGAAGGCTTATAAGAGTTGACAACTATTACTCATAACAACAATGTGCATTTTCTTTCCAGGAGCTTGACTCATA AAAAACTCTAAGGGTTAAGTTTTCTTTCCTTGGAGAAATTATGGATGTGTGACCTCCTAAAAAGGAAGAACATGATTGAG GACACACCTTAATGTTTTTGTACCCAACTCACCACCCACTCCCACTCACCCAACTCACCACTCCCTAGCTTACATGAACC TTTTTTGAGCCTTGTGCACAACCAATCTAACAAGTAGGATTAGAGCCTTACCCAATGGTTCAAGATCCTAAAAAATAAGA GCCCGAAAAAAAAAACCTGACCAACAAAAAGGCAAAGAAAGTATTGAAACAAAATAGTTTCACATGAATGGGTTCACTAA AGAAATGATAGTTTATATACATGGGTACATGGGTATTCTAAATCCCATCAACTTTTTTTTGACTACACTACACACCCACT CATCCAACTCACTCACTCCCTAGCTTCCCGAACCCGTTTTGGGCCCTGTGCGCAGGCAACCCAACATTTAGGCATAATTA GTATTAAGGGGTGAGACTCGACGCAAATAGTGAGGTTGTCGCTATGTGACTTTGCAATTATAGGTTCGAGTCTTGAAGTT CGTCTCTTACAAAAATGTAAGATAAG
CDS sequence (LotjaGi3g1v0057900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAATCACGATGCAACATACTCAGATCATTTCACGTATGATGTTTTTCTTCTGAGTTTTTCAGAAAAAGAAAGCTG CGTTTTTACTGATTATCTCTACCAAGCTTTGCTCGATGATGGAATCAAAACTATCAGATACAATGACAAAACACACTCTC TTGTTGAGAAGACAATTGAGGAATCCAGATTGTCAATGGTGGTGTTGTGCGAAAACTACGCGTATTCCCCTACGTGTCTC GATGTACTTGTCAATATTATTGAGTGTTATGATGCCAAAGCGAAACAGGTTTCAGTCATTTTTTACAAAGTGGAGCCATC GGATGTTTGGCTTCAGGAAAATTCTTATGCAGCAGCTATGATTGAACATGAAAAGAATTTTGGTCATGACTTGGACAGGG TGAAAACATGGAGGTCAGCCCTGTCTAGAATCAAAGACCTTAGTGGAGAATACTGCACGGACGACAAGTATGAATCTGGC TTCATCAAGATGATTGTTAAGGCCACCTCTGCTAAATTGCCTCCTCCTCCCGTGCCTTTAGAAATGAAGCACCTAGTGGG ACTTGATTCTCGATTTGAAGAGGTGAGATCACTTTTAGATATTGAATCCAATGACGCTGTTTGCATGTTGGGAATTCATG GAGATGCTGGAATAGGCAAAACCACACTTGCCGCATATTTGTATAACAAGATCAGGCATCAATTTGAAGCTGCCAGTTTT CTTTCTAATATAAGAGAAAAATCAAACAATGGTAACATCACTAATACTCTGGAAGATCTTCAAAAGACACTTCTATATGA GACTGTTAAGGAAACACAAGTCATGACGAGAAATACATTTGAAGGACGATCTCAAATAAAATCCAAGCTTAGTCATAAAA GGGTTCTATTGATTCTGGATGATGTTGATGATATAGAACAATTGGAAGCACTTGCCGGAGGATGTGATTGGTTTGGTTCC GGTAGCAGGATCATTATAACAACAAGAGATGAAAATGTGCTAGATAAGCACCAGGTTGCAATTAAGAAATATAAAATACA GGAGTTAAACTTCGGTGACTCACTTGAACTCATGTGTTTGTATGCCTTTGATATGAGCAAACCTGCAGAGGACTATGAAG ATATTTCTAATGATGTGGTAAGTTATGCACGGGGTTTCCCACGAGCTTTAAAAGTCCTAGGGTCTCATTTGAAGGGTCTA AGCGTAAAGGAATGGAAGATGGAGTTGAAGAAATTTAGAAAGGTTCCAAATGCTTTTTCTTTTTTGGCAGATTCTTTCTG A
Protein sequence (LotjaGi3g1v0057900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNHDATYSDHFTYDVFLLSFSEKESCVFTDYLYQALLDDGIKTIRYNDKTHSLVEKTIEESRLSMVVLCENYAYSPTCL DVLVNIIECYDAKAKQVSVIFYKVEPSDVWLQENSYAAAMIEHEKNFGHDLDRVKTWRSALSRIKDLSGEYCTDDKYESG FIKMIVKATSAKLPPPPVPLEMKHLVGLDSRFEEVRSLLDIESNDAVCMLGIHGDAGIGKTTLAAYLYNKIRHQFEAASF LSNIREKSNNGNITNTLEDLQKTLLYETVKETQVMTRNTFEGRSQIKSKLSHKRVLLILDDVDDIEQLEALAGGCDWFGS GSRIIITTRDENVLDKHQVAIKKYKIQELNFGDSLELMCLYAFDMSKPAEDYEDISNDVVSYARGFPRALKVLGSHLKGL SVKEWKMELKKFRKVPNAFSFLADSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 5 | 149 | 145 | 2.62E-19 | ||
| Gene3D | 8 | 173 | 166 | 3.4E-36 | ||
| PANTHER | 10 | 417 | 408 | 1.1E-168 | – | |
| PANTHER | 10 | 417 | 408 | 1.1E-168 | – | |
| SMART | 13 | 147 | 135 | 1.3E-4 | ||
| Pfam | 14 | 172 | 159 | 3.5E-19 | ||
| ProSiteProfiles | 55 | 147 | 93 | 12.608 | ||
| Gene3D | 174 | 347 | 174 | 1.4E-32 | – | |
| SUPERFAMILY | 175 | 416 | 242 | 1.5E-56 | ||
| CDD | 186 | 331 | 146 | 1.50977E-4 | – | |
| Pfam | 192 | 413 | 222 | 1.6E-30 | ||
| PRINTS | 209 | 224 | 16 | 1.1E-16 | – | |
| PRINTS | 289 | 303 | 15 | 1.1E-16 | – | |
| PRINTS | 383 | 397 | 15 | 1.1E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0057900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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