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LotjaGi3g1v0059200.3

Overview

Field Value
Gene ID LotjaGi3g1v0059200
Transcript ID LotjaGi3g1v0059200.3
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:6219332..6228102) extracted from Lotus japonicus Gifu genome v1.2.

TCAGGAACCAAATTGACACCCAAGGATGAAAGTAGATGACACTACAACTTCAAGGACCAAATATACTATTCACTCTTTTT TGTTCCCTTTATTTGTTTTTGGCCATTGATAACATATTAACATCCAATAAAAGTTGTGCTTCATTCAACGAAACGGTGAG CAATTCATGATTCATCGATAACCCTCTTTGCTTCTCCATCGTTGTTGTTCATCAAACACAGATTTTTATCCAAATCATCA TCGATTGCATCAAATTTCACAGAGAACAACGTCATTAGGTTTATCTCTCGTTCTTCTTTCCTCTGTTGTTCCTTAGTTGA TGTAATTCTCTTGAAGAATTTTGAGAGAGTGTGGACATTGATTTTTAGGGTTTTGTTTCGGGATCATATTGTACGAATCG ATTGGGGGTTTGATTCAATCAACTTCATCGCTTGCAAATTTTCACTCTATTATCATATGAATTCACCTGTAGGTAGCTTT TGCTTTAGGATTTCTCGGTTTGTAGGATCTGGTCTAGGATTTGATTGGTTTTTATGGTTTCATATGAATTTACATGAACT TTTACTTTATAGGGTATTGGAATTTTTTCAAGGTTGATTTTCATCTGAAGATTTCAGGGGAAAGTTAGGTAATGGCATGT TATTGTATGCCAATTTGATGACACTTAGGTAATGAAACTTAGGTCATGACACATGTGCTCAATGATTACAAAGGCAGAGA AAAAAGTTGGTATTTTTACATGAAGTAGCAAGGATGCAAGCTTAATGTTGGCTAGTTTAAATTGGCCTGGAAGTTTTACA TTTTCATTATCAGTTAAACTGTTTTAGATAAAATGACTTAGGAGCATTCACATTTTAGAATTTGCTTTTGAGTTATTATC AGTTTGTGTTCTAACTTCTAAGCAGGGTTTTGTTGTGGATGACTTCTGGTCTGAAATTCATATTTTTTTGTTTGTGATCT GTACTCTTTATTAGGGCATTAATTGTTAATATACAACACTACATTCTTTTTGTAAGTTTTAAATGACATCATATATCAGA ACGAAATAAACTCAGTCAGACTTTAAATTTAACTGCATCATCTGAAAATCTTTTTAGCTTGCTTGTCAAACAGTGAGTTG CTGTAAGCTACACCATTTCTCTTGGCTGTTATCTAATGGATAAGGGACCACCTCATAGCCTTTTTGTTAATGATGGTTCG TTCATGGCGAGGTTCAAGCAGCTTCAACAAGAGCAGGGGAAGGGGAAGAATACCAAATTAGAGGATTCTAAACCAATTAA AGTTGTTTCTAGACCGCTGACTCCTAATCCTTCCATTGGTAAGGCTACTGATGCACGAAAAACTTCCCAGGCTGGTTCTA GTGGCAAACTTGCTTTCAGTTTAAAGCAAAAATCAAAGCTAGTTCCACCCCCTATTAAGTTGACTGATGAGGATGAAGAA GAAACTAATGCCGGGGATGTTTCAAATGACGCACCGTCGAAACGGCAAAAGTTGGGTCAGGATGATGATGCTGAGCAATC ATCAAGACCACTTGATGTTGGTAATTACTTCTCACATAAGCTATATGCACATGTTTGGTTTGTGGTTAGTATTCTATTTC CCATCAAATGCATGAGGGAGGAATTATCAAGTAAAATAATCAAATAATGGTTCTATGTTGTGATCCATGTAGTGTGTCAT GATGTAATTATCCCAAAAGTTTAAGCTATTGGGTAAATAACGCATGAATGGTTTAATATTATATTTCTTACATGCACCCT CATGCAAAAGCCCAATGGGCTTGAAGCGTGGACAATGCATAGACAACCTACCTACCTTGTGCTTTTTATTCAACTTTTTA TTAGAATAATTATAGACACATCAAGGATCAAACTCTAGACCACTTTGTCATAGAGGCTCTGATAGCATTTCATGAACTAA CATATGAAAATAAGATCAAAATAATTTATAGGTAGGTCATAAGTTATTTTCATAAGCTTGCCTAGACATTTGCATTAACG TATATGCTATAAGGTAAAGCTCAAATAAGATCTTCCAAATACAGCCTAAGTAGACGAAGAGTAAAAATCAGTTGTCTTTT TGGGTGTCTTTGTGAATCATGTACTGAACTTCCTTGATTTAGTTGAAGGAAGATTGAAAGTTGGTTGCCTCAGCTAAATG AGGCATACAATTGCATTCATACTATTTATTGCTTCCATTTTTCTTCTCATATAAACTATAAAGTAGAGTCCTCCTCTACA TTAAGCTCAGTTTCATTACTGAAGGGGTAATTAGTATATTCCTTCTTTGCCAAGTGAAGTGGCATTTAGTTGAAGGAAGA TTGAAGTTGGTTGCCTCAGCTAAATGAGACATACAATTTGCATTCACAGTTTCACACTGCTTTTTGCATCCTTTATCTTC TCGTATAAAGTAGAGCCTTCCTCTACGTTAAGCTCAGTTTCATTACTGAAGGGGTAATCGGTATATTCCTTCTTTGCTAA GTGAAGTGGCATTCAGCAAAGAGGAGAAAGTGTCTTGAATATTTTGTATCATGAATGCAGCTTATTCCTCATGTACCTAT CAAGAATGGTGTATTGGCACGCCTGCTACGAGAGTAATTTCCATTCCCTTGTTCATGCTCTCGGTATTAATAAGTTTTAT AAGTGATATGCAGCACCTCCTTCACCTAGTGATCCTACTGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAA AAACGGAAGGCAATTTGAGGATGTTACACGCCAAAAAAATCCTGGCGATACACCTTTCAAGTATGTTTAGAGTGAACTCA TAACTATGTTGCCTTGATCTTTTGCTTAATGTTCCTAGTTTCGAATGTAATGTAAATATGTGTTGTTTGTTTTAACATGC AGGTTTTTATTTGATGAACGATGTGCTGACTACAAATATTATGAATATAGGCTCGGACAAGAGGAAAAGACCCTTTTGCA GTATAGGGAACCACAGGCAATTCATTATGGTTAGTTTTTGTTATGAGTTTGGAATTTGATAAAATAATACTTGTATTTCA TTCATAATACTTGACTAGACTACAATATATATATAGACTAACAAAGAGATTAAAACAAACTAAATCTATCTCAACCTATA TCTATTTAAATAGATATTATCTCTATTTAAATAGATACTAATCTAAAATAGATAAACAAATCTTAACTATATCTCTATGA GATAGCACTAATAATAAACTAAATCTTAACAGATATTCAACACTCCCCCTCAAGCTAAAGCTTACTTAGCTTTAAGCTTG TAACAAATCTAACCCAAGAAGAAAATTATCTTAATAGATATCCCTTAATAATGACGGTCTTGGCGAATCTCTGAATTGAA TAACTTTCAAACTTCTAGTAAATCCTTGGCGGCAAAAAACAACTTCTCATACTTGATCTGGCTGAAATTGATGCAAGACA AAAACCAATTCTTCTGGAGTGTCGTAGGGTAGCTGAGCCAGCAAACAAGGGCGAAAAACCAGCAACAATACGCCCGAAAA CAAAACAAGGCTGAAGCAACAACTCACCAACAACAACCACACAGAAATAAAACATACTTGAGGTCGATCGATTGATGGCT TCTAAGACAAACAATGGTGTCAACTTTGACACAGACAACTCTCAAACATTAGAGAGTGGGCCAGCGCAACTCGCAGCTGA AGCCCTAAAACCAACAAACCAAACAATCGAGACAAAACAAACGAAGGTGACACTGTCACCTTCAAAACCAAATTGCATAA AGTCAGCCAAGATCAATATAATAAGAGCATCTCGAACAATGAGACGCAAACAACAACTCAAGTCTCAAAAACCAATGCGG AACCTGAGCGTCAAAACAGAGTTAAAACTCTAAACCAAACCAAACCAAACCAAACTAAACCAAACCAAACCAAACCAAAC CAAACTTGGCCAACAATGAGAGATGGCACAACACACGTCAAAACAGAGGATCCTTAAAACCAAACCTAGCTGATACACAA AGAGGACCAGCGAGAACAAAGCAGCGGAGAGAGCGGCGCAATCTGGCTGATACACAAAGAGGACCAGCGAAAACAAAGAA GCGGAGATAGCGGCGCGTGGACTTCACACGCAGAGAGATGGGAGGCGCGTGGCTTGGAATCCGGCGGCGGTGGCTGACTG TAGTCTCTAAGATACTTAACAATACCTAACACTTCCCCTCAAGCTATAGCATATATGTCATATGCATAGCTTGTAACAAA TATAATTAAGATTTAACAATATCCAGATCCTCCCCTCAAGCTAGAGCATATATGTCATATGCATAGCTTGTAACAAATAT AATTAACTTGAGAAGTCGCTGCTGCCGGAGAGAGATATTCCCAATAATAGTCCAAAATTTATACACCAACAAACCACACA ATGCAAAACCAATTCTGCACTTTAATAGAGAGCAAAAATCTTTTCCAACTCCAAAACCACACTGTGCCATCAAAGAAACA AGAAACCAAAACAAGAAACTAGAGCCAACCATGTTCTGAATCTTAAGATCCTTAAATTTAGCGTTGAAACAAGTTTTTGA GTAATACGAGCATACTTCCTTGCTGCCAATCTGGACCAATGGACTTCTGGAATGGAACAGGGAGGAGAGGAAGACCGGTT CTGGGCAAGAACCGCCAAAAACCGAGAACTGAAATTCTTAGAATCTGGAGAACATGTGGGCAAAAAGGAAAGAGAACAAG CGTGAGGGCACCATGTGTCTTGCCACAACTACACCAATTGTAGTTTTAAGTCCTAGTTTAGACTACCAAGAGTAACCAAA AGTGATAACTACTGTCCACCAAACCACTGCTCCATCAACAACTTGCAAACGAAACCCAAAGATGCAAAAACCACAGTAAC AGAATTCCACAGTAGCATGGTTCAGACACTTTAACACGAGTCACGGCCACAAACGACACGCAAGAAGGGCAGATATGGAG AAACCGACCGCTGGAACAGAATCAAGAGAGCATGGCGAACCTTTCTGTGGAAGCGGCATCACGAACGATGGCTGGGAAGG CGGCACAGCGAACCGACCGTTGATTTGATAGTGGTTGAACATTACTAGGGTTCCAAGAGAAAGGGAGCCATAATCAGAAA GAAACGAGGCCGTAAGAAAACGGCTAGAACTAACAAGCGGAAGCAAAGTAAGAAAAATAAATCCAAAGAGATTTGGAAAG TCACCATGAGGGGGCTCACGGGGGAGGAGCCCCCTCACAGCGGAGGGATCAAAACTAGCTCTGATACCAACTTGAATTTG ATAAAATAATACTTGTATTTCATTCATAATACTTGACTAGACTACAATATATATATAGACTAACAAAGAGATTAAAACAA ACTAAATCTATCTCAACCTATATCTATTTAAATAGATATTATCTCTATTTAAATAGATACTAATCTAAAATAGATAAACA AATCTTAACTATATCTCTATGAGATAGCACTAATAATAAACTAAATCTTAACAGATATTCAACAGTCTCATTGTGGGCAA GAAATCTGACAGTTATTGCAACATACAAGATTTAAATAATTTGATAGATAAGATCATAGTAGTCAAGATCGCGACTAAAA TTGCTTAATCGCTTAATTATGTGACTAATGGTTCCCTGGGCGATTAAAATCTCATATGTTATCTTTTTCTGGCTTAATCA TGGCATAATAGTCAGATTAGTTGCCTCCATAATCACACCAGAAAGTATTTTTTTTTTCTTTGTTATTTATGCTATTTTAT ATGCATACATATGAATTTATAAGCATATATATTTGCTAAATCCTATGCTTTTGTGATTTACGATTAACACCCCCCCCCCC CCCTCTTTGACTACAGTCACAATCCCTATTATGACTTCTATGGATAAGATATAACCATGTTCTCAGAATTATTTTACAAT CTGTGAGAGGTTAAACCGCTAATATGTGACATTATTGGGCTTCCTAGTCAATGATGTCTCATCATGAAGAAAATTATAAT TTCACATTTTTTAAGAGTTATTTGTAATAACTGCAATGATTTTATTGGTATGGGTTGATGCTTGAATCAGTAGCCATATT TCATGCTTCTTTCACCTGCCAATATGTAGATATGTGAAGAGTTGCCATGGTTGTACTATATTCGGTAGCATTTTTTTAAT TGGGCTCCCTGGCTCTCTCTGGTCCCTGGAATATGCTTTCTGTTTTCTCTTGACGTGGGTTTATTTGAACTTGGTGTGTA ATGGTGAACAATTCAATTTATAAGGGGTACAAGCAGTGGCGGAGCCATGTTGAGACAGGGGAGGGCTGCAGCCCCCCATA GGTCACGTTTTAATTGGTATATATATGTACCTACGCATAATATTTTATATGATGTGTGTTGTCCCAATGGTTGTTACTCA TGCTGTATTACTGGTAGGTAGCGTCTTCAATTCCTGCCCAAGCCATTTTTTAATTATATTCCATTTTGACAAGCTTGTTT GTGTTTTTTCTAGGTATGTAAATTTGTACAATTAATTAGTGCAAGAATTAAAATATTATTTTATTGCAAGAGGAAAGCTA ATAGTCTTTTTTTGGTACAAAGAAAAGCTAATAGTCTTAGAGCATAACATTAATATATAAATTTCTCTAATAACTAAAAG AATATTATTAGTATAACTTATAATAAATTTTCAATAAGTATATAATTTAGTTTAGTCATTAATTTTTATGTATATATGTC TATATAAGTCCATTCGAAATAAAAATCTTTAATTTATGTTTAATATTTTATTTTAATTTAGCCCCCTCATTATATTTTTT CTAGTTCCGCCACTGGGTACAAGCATATCGTCTTCCAGACCAGCAAATGGTCCTCAGAGGTCTTCTGAGCAGCGGCCAAC TTACCAAATCCCTGCTTCTGCTTTATATGAAAGTGGTGATGTACCAAGAACTTCGGGATCTTCAGTGCAAGCATTATCAG TTGTAAGCTCTGGTAAGGGATATATATACAGCAGGGTTGATTTGGTTTTGTATTTTTCTTCTTTGATTCATCTGTTTAAT CTGGCATTTAACTGTCATTTTGAATTAGATCAAGGTTTGGTTGATTCAAAATTGCTTAGTTGCATTGCATTTAAAAGATG TGGAGATATAGGGACTGTTTCAGTTCTAGAAAATCTTCTCATAGGTTTTGTGTGTAACTTTTTTGTTGACGCATGCATTT TTATATATCTGTTGCAGCTGAGCCCAGTGGATCATCAAATGCTGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAG CTGCACGGGAAGAAAGGTCAAAACAACCTAAGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGTACAAAT TTTGAGTGCAATCGTGACCGAGTGTTTCTTGGTCCTGGATACATTTTAGTTAAAACGGTCTGAATTCTAGTCTTTGTTTC AATGGAGTAATCTTATGATTGCTTCCTTTTGGATTCAGGGAAGAAAGGCCATCATATGGGTGATTATATTCCCCTTGAAG AACTTGAGAAGTTCATGGCTAGCTGTAATGATGCTGGAGCACAGAAAGTTTTGAAGGAGACTGCAGAGAAGGCCAAAATC CAGGCGGATAATGTGGGCCACAAGCTTCTATCAAAAATGGGTTGGAAAGAAGGTGCTGTATACTTTTCTCAGTTTTATGC CTTTCAAGAGGATTAATGAATCATTAATGCATTTTATGTTAGCATGTTTAAGAAAATTTGCCTTTTGATATGGAATGTAA CTACAGAACTTGCTTCAAGTTTTTGCCTTGTCTGATTTAAATAATTTGTTATATATTATTGAAGACTATTACATGATAAT TACATTTATGTGATATTTATAAATTTATATATCCGTGATATCTTGCACTGCTAACCATTATTATAATCTTATATCCAGGT GAGGGTTTAGGCGGCTCCAGGAAGGGTATTTCGGATCCTATCATGGCGGGAAATGTTAAGAAAGATCACTTGGGAGTAGG TGCTGTCCAACCTGGGGAGGTGACTTCTGAAGATGACATATATGAGCAGTACAAAAAGCGCATGATGCTTGGCTACCGTC ACAGACCCAATCCTCTGGTAAATGACCTCTCTATTCTGAACCGTTTTGCAGTGGTGACACGGTGAGTTACTTAACCTGTT CTCATGTTGTAATTGTTTTGTTTTTACAGAACAATCCTCGCAAGGCGTATTACTGAACATCACGAATGAAGCCTTGTGCC ATGTTCATTGTTGGAGATATGGATTGATGTGGTAATAGGCTAACAGGATTTTGTAAACATTTATGTTTTATGATAGGTTT TGCATATGTTGAACATGATATTTTTCTTGTATTATTGGAGGGTAGGGATATGGTTGTGGTTTATCGACCACAAGTTAGCA AACGAAGGTAATGTTTTCACTGTTGGGCTTCGGAATATGTTATCTTTCACTGGCACTCTTGAGCCTGAAAGCTTGTTCAT TTCAAGTTGCTTAGCAATTTTTCGACTTAGCTATTGCGCGGTGCGCTTTGATATTCTAGTCACTCCAATAATATTCGGTT GTTAACTTCTTATTGGTTTAGTTTTGTAGCAGTAAATTTTTTAGGTATCTGTATTATTGAAAATCATTAACTTTAGTATC TTGTTTTTCAGTTGAATTCCTGAATTTTTTTCTTTTGGTCTGAAGTTCCTGAAAGAGGATTAATAGTCATACCTAAAAAG TTTAGTATTTTCCCATTTTGAATGTAATTTATTTGTTATTTTAGTTTTCAG 

CDS sequence (LotjaGi3g1v0059200.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATAAGGGACCACCTCATAGCCTTTTTGTTAATGATGGTTCGTTCATGGCGAGGTTCAAGCAGCTTCAACAAGAGCA GGGGAAGGGGAAGAATACCAAATTAGAGGATTCTAAACCAATTAAAGTTGTTTCTAGACCGCTGACTCCTAATCCTTCCA TTGGTAAGGCTACTGATGCACGAAAAACTTCCCAGGCTGGTTCTAGTGGCAAACTTGCTTTCAGTTTAAAGCAAAAATCA AAGCTAGTTCCACCCCCTATTAAGTTGACTGATGAGGATGAAGAAGAAACTAATGCCGGGGATGTTTCAAATGACGCACC GTCGAAACGGCAAAAGTTGGGTCAGGATGATGATGCTGAGCAATCATCAAGACCACTTGATGTTGCACCTCCTTCACCTA GTGATCCTACTGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAACGGAAGGCAATTTGAGGATGTTACA CGCCAAAAAAATCCTGGCGATACACCTTTCAAGTTTTTATTTGATGAACGATGTGCTGACTACAAATATTATGAATATAG GCTCGGACAAGAGGAAAAGACCCTTTTGCAGTATAGGGAACCACAGGCAATTCATTATGTTCCGCCACTGGGTACAAGCA TATCGTCTTCCAGACCAGCAAATGGTCCTCAGAGGTCTTCTGAGCAGCGGCCAACTTACCAAATCCCTGCTTCTGCTTTA TATGAAAGTGGTGATGTACCAAGAACTTCGGGATCTTCAGTGCAAGCATTATCAGTTGTAAGCTCTGCTGAGCCCAGTGG ATCATCAAATGCTGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAGGTCAAAACAACCTA AGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGGAAGAAAGGCCATCATATGGGTGATTATATTCCCCTT GAAGAACTTGAGAAGTTCATGGCTAGCTGTAATGATGCTGGAGCACAGAAAGTTTTGAAGGAGACTGCAGAGAAGGCCAA AATCCAGGCGGATAATGTGGGCCACAAGCTTCTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTTTAGGCGGCTCCAGGA AGGGTATTTCGGATCCTATCATGGCGGGAAATGTTAAGAAAGATCACTTGGGAGTAGGTGCTGTCCAACCTGGGGAGGTG ACTTCTGAAGATGACATATATGAGCAGTACAAAAAGCGCATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGAACAA TCCTCGCAAGGCGTATTACTGA 

Protein sequence (LotjaGi3g1v0059200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDKGPPHSLFVNDGSFMARFKQLQQEQGKGKNTKLEDSKPIKVVSRPLTPNPSIGKATDARKTSQAGSSGKLAFSLKQKS KLVPPPIKLTDEDEEETNAGDVSNDAPSKRQKLGQDDDAEQSSRPLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVT RQKNPGDTPFKFLFDERCADYKYYEYRLGQEEKTLLQYREPQAIHYVPPLGTSISSSRPANGPQRSSEQRPTYQIPASAL YESGDVPRTSGSSVQALSVVSSAEPSGSSNADSLALMEFYMKKAAREERSKQPKQSKDEMPPPASLQGKKGHHMGDYIPL EELEKFMASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDHLGVGAVQPGEV TSEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 4 433 430 8.0E-156
PANTHER 4 433 430 8.0E-156
MobiDBLite 23 140 118 -
MobiDBLite 56 75 20 -
Gene3D 122 195 74 5.2E-23
SUPERFAMILY 125 190 66 8.11E-17
SMART 139 193 55 3.9E-15
Pfam 140 188 49 5.2E-13
ProSiteProfiles 141 184 44 13.31
MobiDBLite 209 234 26 -
MobiDBLite 285 313 29 -
SMART 348 395 48 6.3E-15
ProSiteProfiles 350 397 48 16.802
Pfam 351 394 44 5.1E-14

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0059200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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