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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0069200 |
| Transcript ID | LotjaGi3g1v0069200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150; TrEMBL-Plants: tr|A0A151R328|A0A151R328_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi3g1v0069200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7550973..7555263) extracted from Lotus japonicus Gifu genome v1.2.
TTGAAAAAAAAATTAAACACCATTTTTTTATATATTTTTGGTAAAAAGTACTAAAACCCAAACAACCAAGGTGCATGAAA GAAGATAAACAAGAGCTCTAAGCTAAACCTTATTATCTTCAAACATTGTCGAAGTTCACAGCCATTTCCTCACACACACA GGAAGAAGAAGATGACGACGCTTCTTCAATCCTCTCTGAACAACAAAAGCCTCTCTCTATCTCTCTCATCTTCTCCCTGC TATTCTTCCCCACTTCCCTTCAAGCTCTCCACTCTCAACTTGTCTCAGACACAGAGCGTGTGTTACCAGAGTCTCTCTGT CACCTGCTCCATCTCAAAGATCCACAATTATGGCACCGTGGACTATGAGCGCAGACCCATTGTCAGGTGGAACGATATTT ACAGGAGGATATCGTTGATGGAAAACCCTGAACTGGGTTCTGTTTCTGTGTTGAATCAGTGGGAGAATGAAGGCAAGAAT CTTACTAAGTGGGAGCTTTCCAGGGTTGTCAAGGAGTTGAGGAAGTATAGGAGACATCAGAGAGCCCTTGAGGTAAAACT TCATGTTTAGAAGCTTATTGGGTTATTGTTTTTTTTCCTACTTTGTGTAGTTTCATTGAATAAATGTTGATTATTTTTAT TTTAAATTTTAAATTTTTTTTGTGGGATTTTTTTTGGAGTGAGTGTTAGTTTGCTGTTTTGATGAATTGAATGATGCTGT GAGTGGTGGAATGTGTTTTTTGTGAGAGGGTTGGAAGAGTTGGCTATTTGGGTTTGATTCATTAGGTTAAAGTGCATAGT TGATACTTCAGATATATATTTTTTTTTTGTGTTGAGTTGAGTAGCTAGATTTTCTTTGGACTCTTCTTAGCTTAGTTGGA GTTGTTTGCTGAAGAAAATACTGGTCCTTGAGGTTGAATAACAGTCTGTGTTTGATTCGGGTTATTCATTTTGATATGAA TATGTTTCTTCATATTTGTCCTTGAGGTTGAATAACACAGTCTTTCATGTTCTGTGGTTGTTAAACTGCTTCCAGTAGTA TCTGAATTGAAATCTTCTAGAGGTTCATGTTGGAGGGTTTTATTATATAGCATTTCCCTTGGACTTAAGTTTTGCATGTA CCAAATCTTCACTCTGGTGTTGTACTTTTAGCATTAAATTTTGGGATTTTAGAGCAAGGTCTTTTGAGTCTGGGTGTACT AGTCATAAGCGCATTGGAGCTTGGGATTTTAGAGCAACGCCTTTTGAGTTTGTGTGAATCAAATAGCAAGGACAGGTGGC AGAGTTTTTCTGCATCTCCCAATTTTGCTTCATTGCTGTGACATGGGAGATAAAGGGTTCATTTACTTAGTTTCAATGTT TGAAAAAATTGTCTTAACCTGAAAAGTTACTCAGACAAAAAATAATGAAATATTGAGTTGTTGTAAGACATCCAATTATG TGGGACAGCATTTTCTTAGGTTTGCTCATTTGTTGTGAATTGAGATTTGAGGGTGAGACTGAGAACGAAGGTTGGGGGGG AGAGCCAGGACTCTATTTTTAAGGCTTGATAAGTTATTTCTCTGCAATAATTTTTCCATCTTCCATCTTTGATTCTGCAA TCACCATGGTTCAGAATTTGGCAAAAGAGTGATATTCAATAAAAGTGCATCTCTTTCTATTTGTTTTCTACCTGTTATGG TCCAGTTCCTTTAGCATGTTCTGGACTTTTTGAAAGTTGTATCTTCTTTGATGTTCTACCTACCAGCACCAGAGGTGCTC TGATTAAAACTGTTTGGTGCAACTTAACTTCACCTAAAGAGAGAGCATGGGCTAGAAAAGAAAAAGTATGTGAATGAGCT TTCCATCTTCCACATCAGTCTGTCAAGAAGACAAAAGATTTTTCAAAGGAGCTTCTTTTTTGTAGCTGTATCTCACTGGA TGCAAGGGAAACATCGTTTTGTTTTTTTTGCTTTGCTTAAACATGGCAACTATTTTCCTCTCTATGCTCTACCTTTCTCC TTCTCTCGTTCTTTCTTTGGCTCTGCTAAAGCTATATATATATATATTTATTTATGGTGTGGAGGGCTATATATGTTTTA ACATCTTTGGACCATCAGTCATTCTAAAGAAACAGAGATTGCTTCATCCTGTTTGGCGGAGTCACAAAAATATAATTAAA ATTTGCTATGAGAACATGTGTAATTGCTGCCTGGTTTGATTCTATAGAAGTTCTATTCCCTTAAATCTATCAGAAATGTG CTTTCTTTACTATTGATATCATGCACTTGATTTTTTAGGGTAGACATAACAACAACAGCTACAATAGTAGCCTGTTCCGA GTTCCCACTATTAACATAAACATAAAATTTTATAAACAGTTTCACCACTCTTATATTGTCCACTTGTTAATCCTGTGTTG ATTGCAATATCCAAATTTGCAAACACTATTCCAATTGCATAATCTGGAAGTCTATCCCCCCCCCCCCACTACTCTATTAA ATGGAATGCTTCTTTTGGAATGTGTGGAAGTAAGATATCAGCTTCTGTCTCTGATTGCATATACTTCTTTGCCTCAAATG TTTTATCGGCCATGAACAATTTTATGAAAGTAGTGAGTACATGTTGCAGGTGTATGATTGGATGAACAATAGACAAGAGA GGTTCAGAGTATCTGCAAGTGACGCAGCAATTCAGTTAGATCTAGTTGCAAAAGTTCATGGAGTTTCTAGTGCAGAAAGA TTTTTTCTGAACCTGACTGATAACTTAAAAGACAAGAGGACTCATGGTTCCCTGTTGAATGTATATGTGCACTACAGATT GAAGGAAAAGGCGGAATCTTTACTTGACATTATGAGGAGTAAAGGGTATGTGATACATTCACTACCATTTAATGTAATGA TGACTCTGTACATGAACCTCAAGGAATATGATAAAGTTGATATGTTGATTTCAGAAATGAAAGAGAAAAACATACGGCTC GATATCTATTCATATAATATCTGGTTATCTTCTTGTGAGTCGATAGAAAAGATGGAACAAGTGTTTGAACAAATGGGAAA GGATCCTGCCATTGTCCCCAACTGGAGTACATTCAGCACAATGGCTACTATATACATTAAGATGAATCAGTTTGAAAAAG CAGAAGACTGCTTAAGAAAGCTTGAGAGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTACCTCCTGAGTCTGTAT GGAGGTGTTGGAAACAAGGATGAAGTTTATCGCGTGTGGAGTACCTATAAATCAATTTTCCCAACTATACCAAACTTGGG ATACCATGCTATTGTTTCTTCTCTGATCAGAATAGATGATATTGAGGGTGCAGAAAAGCTTTATGAGGAATGGGTTTCAG TAAGATCTTCTGATGATGCTAGATTGGGAAACCTTCTCATAGGCTGGTATGTGAAGAATGACAATATAGATAAAGCGTTG AATTTCTTTGAGCACATGACTGATGGTGGTAGTGTTCCAAATTCGAATACATGGGAGCTTCTCTCTGAGGGCTATATTGC AGATAAGAGGGTTTCTGAGGCCCTATCCTGCTTGAAAAAAGCTTTTGCCACTGATGGTTCAAAGAGTTGGAAACCAAAGC CCTTAACCTTGTCTGCATTCTTTAAGCTTTGTCAAGACGAAGATGACACGGCGAGCACCGAGATTTTAATTGGGTTGTTG AGGAAGTCGGGATTTCTTGAAAATGAAGCTTATGCATCACTCATTGGCTTATCTGATGCTACCATTGGCAAAGGTGACTT GTCTAGAACTGATGATATTGTTGACAGTGAAAATGTGGATGATGACTCTCAAATGTTGTTAAACCAACTATAGAGTAGCT TTTGATACTTTTTTCTTTTTACCACTGGGAAATAGTTTGCTAGAACATAGGGGAATTTTGGTCAAAGATTATGGTTTTTT TGTCAAGTTCCTATGCCTTATCATGACAGTAATGAAGTGCTGGCTGCTGTTTGAACTACAAAGGTTGGAATTTTTATGCT GGCTTATAACATTATCATGTAATATTTTGCTCTAACAAACTGATATATGTGATCTGTGGCCATCCTTTGTGTATTCTTTG TATGTCTTTTTAAATCTTATTTTGTTTATATTTGAACTATAATAGAGTAGGCTCAATATGAGCATATGGATGATATTTTG GTCTTTGGACCATTGCTGGTAAATGGAACATCAGTATATATGGGACTGTCTTTTTTTCTGCCCCATCACCCTTTTTCCGC GTTCTTTCCCCTATCTTAGTGCATGTTTGGATATACGGTGAAAAATTACAC
CDS sequence (LotjaGi3g1v0069200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACGCTTCTTCAATCCTCTCTGAACAACAAAAGCCTCTCTCTATCTCTCTCATCTTCTCCCTGCTATTCTTCCCC ACTTCCCTTCAAGCTCTCCACTCTCAACTTGTCTCAGACACAGAGCGTGTGTTACCAGAGTCTCTCTGTCACCTGCTCCA TCTCAAAGATCCACAATTATGGCACCGTGGACTATGAGCGCAGACCCATTGTCAGGTGGAACGATATTTACAGGAGGATA TCGTTGATGGAAAACCCTGAACTGGGTTCTGTTTCTGTGTTGAATCAGTGGGAGAATGAAGGCAAGAATCTTACTAAGTG GGAGCTTTCCAGGGTTGTCAAGGAGTTGAGGAAGTATAGGAGACATCAGAGAGCCCTTGAGGTGTATGATTGGATGAACA ATAGACAAGAGAGGTTCAGAGTATCTGCAAGTGACGCAGCAATTCAGTTAGATCTAGTTGCAAAAGTTCATGGAGTTTCT AGTGCAGAAAGATTTTTTCTGAACCTGACTGATAACTTAAAAGACAAGAGGACTCATGGTTCCCTGTTGAATGTATATGT GCACTACAGATTGAAGGAAAAGGCGGAATCTTTACTTGACATTATGAGGAGTAAAGGGTATGTGATACATTCACTACCAT TTAATGTAATGATGACTCTGTACATGAACCTCAAGGAATATGATAAAGTTGATATGTTGATTTCAGAAATGAAAGAGAAA AACATACGGCTCGATATCTATTCATATAATATCTGGTTATCTTCTTGTGAGTCGATAGAAAAGATGGAACAAGTGTTTGA ACAAATGGGAAAGGATCCTGCCATTGTCCCCAACTGGAGTACATTCAGCACAATGGCTACTATATACATTAAGATGAATC AGTTTGAAAAAGCAGAAGACTGCTTAAGAAAGCTTGAGAGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTACCTC CTGAGTCTGTATGGAGGTGTTGGAAACAAGGATGAAGTTTATCGCGTGTGGAGTACCTATAAATCAATTTTCCCAACTAT ACCAAACTTGGGATACCATGCTATTGTTTCTTCTCTGATCAGAATAGATGATATTGAGGGTGCAGAAAAGCTTTATGAGG AATGGGTTTCAGTAAGATCTTCTGATGATGCTAGATTGGGAAACCTTCTCATAGGCTGGTATGTGAAGAATGACAATATA GATAAAGCGTTGAATTTCTTTGAGCACATGACTGATGGTGGTAGTGTTCCAAATTCGAATACATGGGAGCTTCTCTCTGA GGGCTATATTGCAGATAAGAGGGTTTCTGAGGCCCTATCCTGCTTGAAAAAAGCTTTTGCCACTGATGGTTCAAAGAGTT GGAAACCAAAGCCCTTAACCTTGTCTGCATTCTTTAAGCTTTGTCAAGACGAAGATGACACGGCGAGCACCGAGATTTTA ATTGGGTTGTTGAGGAAGTCGGGATTTCTTGAAAATGAAGCTTATGCATCACTCATTGGCTTATCTGATGCTACCATTGG CAAAGGTGACTTGTCTAGAACTGATGATATTGTTGACAGTGAAAATGTGGATGATGACTCTCAAATGTTGTTAAACCAAC TATAG
Protein sequence (LotjaGi3g1v0069200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTLLQSSLNNKSLSLSLSSSPCYSSPLPFKLSTLNLSQTQSVCYQSLSVTCSISKIHNYGTVDYERRPIVRWNDIYRRI SLMENPELGSVSVLNQWENEGKNLTKWELSRVVKELRKYRRHQRALEVYDWMNNRQERFRVSASDAAIQLDLVAKVHGVS SAERFFLNLTDNLKDKRTHGSLLNVYVHYRLKEKAESLLDIMRSKGYVIHSLPFNVMMTLYMNLKEYDKVDMLISEMKEK NIRLDIYSYNIWLSSCESIEKMEQVFEQMGKDPAIVPNWSTFSTMATIYIKMNQFEKAEDCLRKLESRIKGRDRIPFHYL LSLYGGVGNKDEVYRVWSTYKSIFPTIPNLGYHAIVSSLIRIDDIEGAEKLYEEWVSVRSSDDARLGNLLIGWYVKNDNI DKALNFFEHMTDGGSVPNSNTWELLSEGYIADKRVSEALSCLKKAFATDGSKSWKPKPLTLSAFFKLCQDEDDTASTEIL IGLLRKSGFLENEAYASLIGLSDATIGKGDLSRTDDIVDSENVDDDSQMLLNQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 13 | 20 | 8 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 534 | 509 | - | – | |
| PANTHER | 42 | 532 | 491 | 2.3E-251 | – | |
| PANTHER | 42 | 532 | 491 | 2.3E-251 | – | |
| SUPERFAMILY | 68 | 407 | 340 | 7.59E-5 | ||
| Gene3D | 134 | 258 | 125 | 3.2E-13 | ||
| ProSiteProfiles | 175 | 209 | 35 | 8.407 | ||
| Pfam | 178 | 206 | 29 | 0.053 | ||
| ProSiteProfiles | 210 | 244 | 35 | 7.848 | ||
| TIGRFAM | 214 | 245 | 32 | 9.2E-4 | ||
| Pfam | 233 | 288 | 56 | 4.6E-4 | ||
| Gene3D | 259 | 344 | 86 | 5.2E-8 | ||
| ProSiteProfiles | 278 | 308 | 31 | 7.103 | ||
| SUPERFAMILY | 279 | 449 | 171 | 1.9E-6 | ||
| Gene3D | 345 | 480 | 136 | 1.0E-13 | ||
| ProSiteProfiles | 348 | 382 | 35 | 5.437 | ||
| ProSiteProfiles | 383 | 417 | 35 | 9.109 | ||
| Pfam | 388 | 414 | 27 | 0.0079 | ||
| TIGRFAM | 388 | 418 | 31 | 1.1E-4 | ||
| ProSiteProfiles | 418 | 453 | 36 | 5.985 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0069200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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