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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0090300 |
| Transcript ID | LotjaGi3g1v0090300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7LF48|G7LF48_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0090300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:10225887..10229468) extracted from Lotus japonicus Gifu genome v1.2.
TCGCATTATTATTCAAATCAGACACTGTTTTCAACTTTGAAGTGTTGACTTCAAGTCCTTTCTTCGTTTCATCACAATGG CGTCTTCATCCTGGAATCATCAATGGATCTACGACGTGTTCATAAACTTCAGAGGAGAAGACACCCGTCACAGCTTCGTT TCTCATCTCTATGCTGCACTCTCAAACGCTGGAATCAACACTTTCCTTGACGATGAGAAGCTTATAAAAGGATCCGATCT GAAACCATCACTGTTGCGAGCTATAGAAGGTTCTCGTATATCCTTAGTTGTTCTCTCCACCAACTATACTTCATCAAGAT GGTGTCTCGATGAACTCGACAAAATCATGGATTGCCGTGGAACTTATGGCCAGATTGTTATTCCCATTTTTTATGAAGTT GATCCATCACACGTACGTAAGGGTACGCATGCTTTTTCTTTGGCAGCAGCTGGAGGAGATGGATACGTAGAGGTAGACGT GGGGATGAAGTGGATGCGTGTGCTCAATCAAGTTGCAAATTTGTCTGGTTGGGATTTAAGCACCTTTAGGTAAATCAATA CTTCCTTCCTTCATAGATTCTTTTATTTGAAAATGAAGCAGGTTTTGACCTTATATAGCATTTCCTTATTTATGCTCATA AGGGTTAGCTTAAGTGGTAAAAGCTAGGGGACATAAGGGTTGAGTGAAATGAAGGGTGAAGGGTCCAGGATTCGAATCCT GAGGAAGACTAATCTACTGACATTTCTAACAACTAACATTTACCTATAAAAAAATGCTCATTTTTGTTTGTTTTGTAATT ACTTATTATTGAAGGACTCAAGCTGAAGCAATTGACAAAATTGTTAAGGATGTTTTGACAAAGCTAGAAAAGGCGGTTTT GTTTATTACCGAGTATCCGGTTGGATTAGATGCTCAAGTGGAAGAAGTGATTGGGTTTAGGGAAGATCATACAAAAAATG TTTTTACAGTAGGGATCTGGGGAATGGGAGGATTGGGTAAGACAACCTTAGCCAAATCCATCTACAATAAAATTCATGGT GAATTTGAAGGTACAAGTTTTATTGAAAATATTAGAGAAGTTTGTGAAAATGATAGAAGAGGGCATATTCATTTACAAGA ACAACTTCTTTCAGATGTCCTGGAAACACAAGTGAAGATACATAGTACTGCATTTGGGATAAGTATGATTAAGAAGAAAA TTTCTAGGAGAAAGGCACTGGTTATACTTGATGATGTGACCACGTTTGAGCAATTAAAAGCCCTATGTGCGAATCGTGAA TGGTTAGGTGTCGGAAGCGTACTAATTGTTACCACCAGAGATGTACACCTACTTAATTTAATTAAAGTTGATCGTGTCTG TAGAATGAAGGAAATGGACCAAAATGACTCCCTTGAGCTTTTCAGTTGGCATGCTTTCAGACAAGCAAGTCCGAGAAAAG ACTTCATTGAACTCTCAAGAAATGTAGTTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTA CATGAGAGGAAGAAAAAAGAATGGAGAAGTGTATTGTCAAAACTGAAGATGATTCCCAATGATCAAGTCCAAGAGAAACT CAGAATAAGTTATGACGGTTTAAAGGATGAGCTGCAAAAGGATATATTTCTTGACATATGCTGTTTCTTTATTGGGAAAG GCAGAGCCTGTGTTACAGAGATATTAAATGGGTGTGGACTTCATGCTGATATTGGAATAACTGTCCTCATAGAGAGGAGC CTTGTGAAAGTTGAAAGGAATAACAAGCTTGGAATACATGATCTGGTTCGAGACATGGGAAGAGAAATTGTTCGTGAAAG TTCAACAAAAGGGCTTGGGAAGCGTACTCGATTGTGGTCTCCTGAGGATGGACATGATGTGTTGACAAATAATACTGTAA GAAATTTCTCTGTATAGAGTTTCAAACTTTTCATTACTCTCCATAATCTTATCGAGATGATTATTATTTTTTTTTACTTG TTTTTTCTATTCATAAATATGCACATGATGTTTTTCCTTGTCATGTTCATTCAAAAGTGTAGTTAGGTTGCACCACCGCA ACTTTATGCTCCATTTTCTAGTGAGTAATGAAAAGGGCTTCCCCTTACTTTTCTCTGCTTTTTCTTTTCTTCACATGTAA GGAACAGAAACTGTTGAGGGATTGGTTTTGAACTTGCAAAGAACCGGTAGGATTTCCTTCAATGTTAATGCTTTCAAGGA GATGAAGAAATTGAGACTTTTGCAACTTGTTAGTGTTGAACTCAAAGGAGGTTATAAGCACCTTTCCAATTTTAAGCATA AGTTTAATTGTTTGGAGCAGCTTCTCTATTTATATTTCTAACATTCAAGCGATAAGGGTAAATGAGGCAATTTTTGGTGA CTAAGTGTCTTTATTTGTTAATTATACTCCAAAATATTGTTTTGAAGCAGCTGTCATAATATTGTTTTTCTTTTATCTTG TTTGTTTATTGTGATAGTTCTAGTTTATACACCGGTAAGGAAATACTGAGCTTTTTGTTGTATTTTGGACTTGGGTTTTA GATGTGACTCTTTTTGTATGCAAGCTATAAGCTGAAGAACTTTTGTACTTATATTTCCACTTAAATTGCACTTGGAGATC AAATCCTCTAAGAGATTTTTCTTACCATTTGTCACAGCAGTAGGAGATCCATGTGCTGAATAACAACATACGTTGATACT CTGCTAGGCGTAGAACGTTCACACTTTGCAGAGACAAAAGTCACTAGCAGGTTGCTTAATGATAATTGTTATTGCTGTTG AGTTATAGGCTCCATGTAAAAGATGAGGAAGAGAAAATCATCAAAGATGTTTTCCAAGTTGCTTTCTCTGTCTAGGTGTG TTCACAATTTTAGTACTTAATTACAGTTCAATTGCTCCGAACATGTGGCCTTTGTTCTGTTTCTTTTTGTTTGTTTCAGG GAGTTGTTTGGATAATTAGTTTCACTGTATATAACCTAAACTTTTTTTTTCAGCTTGCTTTCCTTGCACGAGATTAAAAA GGAAAGACGCATGCTTCTGAAAGCCCAAATTAGCCATCTGATTCCCCTTCACTTTTGAATAGATAGTTCGTGAAGTATTT AATGTAAAAAGATCAATGGATAGATAGTAATCATTGCTTTCAGTTTCAATGTCCATATAAATATGATGAACATGCTTATA GTTATAGGCATCACAAGGCACTTGAACATTTGCATAGTAAATAGTTGTGATATTCTCATATCCTTTTCTTTCTACCTCTT CAGTTTTCACATGACTTCATGATCCTCATACACAAGACAGTTGTAGCTTCAAATCTCTCTTACTTTTACCACAGTTGTAC CGGGATCTATACCACCTTTAGACACATAAATATATGACTGCTCTAAACCGGAGCTATGCTCTAACCTGGAGCTAAAATAA TTTCCTTACAGCATGGGAGATGCAAGGTTGCTAATTAGATTGCTTAAATACTATTCTGGTGGGCCCAAATTGACATATTG GATTTAAGCAACCCAAGTATAATTTGCTCCAACCAAGATTGCTTATTTTACTTTTATTTGGG
CDS sequence (LotjaGi3g1v0090300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCTTCATCCTGGAATCATCAATGGATCTACGACGTGTTCATAAACTTCAGAGGAGAAGACACCCGTCACAGCTT CGTTTCTCATCTCTATGCTGCACTCTCAAACGCTGGAATCAACACTTTCCTTGACGATGAGAAGCTTATAAAAGGATCCG ATCTGAAACCATCACTGTTGCGAGCTATAGAAGGTTCTCGTATATCCTTAGTTGTTCTCTCCACCAACTATACTTCATCA AGATGGTGTCTCGATGAACTCGACAAAATCATGGATTGCCGTGGAACTTATGGCCAGATTGTTATTCCCATTTTTTATGA AGTTGATCCATCACACGTACGTAAGGGTACGCATGCTTTTTCTTTGGCAGCAGCTGGAGGAGATGGATACGTAGAGGTAG ACGTGGGGATGAAGTGGATGCGTGTGCTCAATCAAGTTGCAAATTTGTCTGGTTGGGATTTAAGCACCTTTAGGACTCAA GCTGAAGCAATTGACAAAATTGTTAAGGATGTTTTGACAAAGCTAGAAAAGGCGGTTTTGTTTATTACCGAGTATCCGGT TGGATTAGATGCTCAAGTGGAAGAAGTGATTGGGTTTAGGGAAGATCATACAAAAAATGTTTTTACAGTAGGGATCTGGG GAATGGGAGGATTGGGTAAGACAACCTTAGCCAAATCCATCTACAATAAAATTCATGGTGAATTTGAAGGTACAAGTTTT ATTGAAAATATTAGAGAAGTTTGTGAAAATGATAGAAGAGGGCATATTCATTTACAAGAACAACTTCTTTCAGATGTCCT GGAAACACAAGTGAAGATACATAGTACTGCATTTGGGATAAGTATGATTAAGAAGAAAATTTCTAGGAGAAAGGCACTGG TTATACTTGATGATGTGACCACGTTTGAGCAATTAAAAGCCCTATGTGCGAATCGTGAATGGTTAGGTGTCGGAAGCGTA CTAATTGTTACCACCAGAGATGTACACCTACTTAATTTAATTAAAGTTGATCGTGTCTGTAGAATGAAGGAAATGGACCA AAATGACTCCCTTGAGCTTTTCAGTTGGCATGCTTTCAGACAAGCAAGTCCGAGAAAAGACTTCATTGAACTCTCAAGAA ATGTAGTTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTACATGAGAGGAAGAAAAAAGAA TGGAGAAGTGTATTGTCAAAACTGAAGATGATTCCCAATGATCAAGTCCAAGAGAAACTCAGAATAAGTTATGACGGTTT AAAGGATGAGCTGCAAAAGGATATATTTCTTGACATATGCTGTTTCTTTATTGGGAAAGGCAGAGCCTGTGTTACAGAGA TATTAAATGGGTGTGGACTTCATGCTGATATTGGAATAACTGTCCTCATAGAGAGGAGCCTTGTGAAAGTTGAAAGGAAT AACAAGCTTGGAATACATGATCTGGTTCGAGACATGGGAAGAGAAATTGTTCGTGAAAGTTCAACAAAAGGGCTTGGGAA GCGTACTCGATTGTGGTCTCCTGAGGATGGACATGATGTGTTGACAAATAATACTCAGTAG
Protein sequence (LotjaGi3g1v0090300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSWNHQWIYDVFINFRGEDTRHSFVSHLYAALSNAGINTFLDDEKLIKGSDLKPSLLRAIEGSRISLVVLSTNYTSS RWCLDELDKIMDCRGTYGQIVIPIFYEVDPSHVRKGTHAFSLAAAGGDGYVEVDVGMKWMRVLNQVANLSGWDLSTFRTQ AEAIDKIVKDVLTKLEKAVLFITEYPVGLDAQVEEVIGFREDHTKNVFTVGIWGMGGLGKTTLAKSIYNKIHGEFEGTSF IENIREVCENDRRGHIHLQEQLLSDVLETQVKIHSTAFGISMIKKKISRRKALVILDDVTTFEQLKALCANREWLGVGSV LIVTTRDVHLLNLIKVDRVCRMKEMDQNDSLELFSWHAFRQASPRKDFIELSRNVVAYCGGLPLALEVLGSYLHERKKKE WRSVLSKLKMIPNDQVQEKLRISYDGLKDELQKDIFLDICCFFIGKGRACVTEILNGCGLHADIGITVLIERSLVKVERN NKLGIHDLVRDMGREIVRESSTKGLGKRTRLWSPEDGHDVLTNNTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 374 | 374 | - | – | |
| SUPERFAMILY | 2 | 152 | 151 | 1.7E-41 | ||
| PANTHER | 7 | 523 | 517 | 5.0E-262 | – | |
| PANTHER | 7 | 523 | 517 | 5.0E-262 | – | |
| Gene3D | 9 | 175 | 167 | 1.1E-60 | ||
| ProSiteProfiles | 10 | 149 | 140 | 28.197 | ||
| SMART | 11 | 149 | 139 | 1.4E-43 | ||
| Pfam | 12 | 178 | 167 | 2.2E-40 | ||
| SUPERFAMILY | 176 | 439 | 264 | 3.19E-59 | ||
| Gene3D | 176 | 339 | 164 | 4.7E-23 | – | |
| Pfam | 192 | 416 | 225 | 8.6E-31 | ||
| PRINTS | 209 | 224 | 16 | 3.3E-19 | – | |
| PRINTS | 286 | 300 | 15 | 3.3E-19 | – | |
| Gene3D | 345 | 435 | 91 | 3.6E-8 | – | |
| Phobius | 375 | 393 | 19 | - | – | |
| PRINTS | 379 | 393 | 15 | 3.3E-19 | – | |
| Phobius | 394 | 526 | 133 | - | – | |
| SUPERFAMILY | 415 | 521 | 107 | 6.8E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0090300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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